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Connectome Project X: X-ray microscopy revealing neuronal wiring diagram

Research Project

Project/Area Number 20200001
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research a proposed research project)

Allocation TypeSingle-year Grants
Research Field Nerve anatomy/Neuropathology
Bioinformatics/Life informatics
Research InstitutionThe University of Tokyo

Principal Investigator

MIZUTANI Haruo  東京大学, 総括プロジェクト機構, 特任 (40444103)

Co-Investigator(Kenkyū-buntansha) MAKINO Takaki  東京大学, 総括プロジェクト機構, 特任助教 (20418651)
Project Period (FY) 2008 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥36,140,000 (Direct Cost: ¥27,800,000、Indirect Cost: ¥8,340,000)
Fiscal Year 2010: ¥12,220,000 (Direct Cost: ¥9,400,000、Indirect Cost: ¥2,820,000)
Fiscal Year 2009: ¥11,050,000 (Direct Cost: ¥8,500,000、Indirect Cost: ¥2,550,000)
Fiscal Year 2008: ¥12,870,000 (Direct Cost: ¥9,900,000、Indirect Cost: ¥2,970,000)
Keywords神経回路網 / ニューロインフォマティクス / コネクトーム / X線顕微鏡 / シナプス分解能 / 神経ネットワーク / シナプス
Research Abstract

Our purpose is to develop an atlas of neuronal circuits in the brain using high resolution X-ray microscopy by laser and synchrotron radiation. In this study, a full-field soft X-ray microscope revealed synapses in the mouse cerebral cortex with 25 nm resolution. Moreover, phase contrast hard X-ray nano-tomography unveiled 3D structure of the mouse brain tissue with isometric nano-meter voxel sizes of 60 nm resolution. In the near future, X-ray microscopy is expected to contribute "Connectome Project" to begin deciphering the wiring diagram of the whole brain by applying the nano-resolution X-ray 3D imaging.

Report

(4 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • 2008 Annual Research Report
  • Research Products

    (50 results)

All 2011 2010 2009 2008 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (33 results) Remarks (2 results) Patent(Industrial Property Rights) (2 results)

  • [Journal Article] Nano-resolution X-ray tomography for deciphering wiring diagram of mammalian brain2011

    • Author(s)
      Haruo Mizutani, Hiroshi Sagara, Akihisa Takeuchi, Takuji Ohigashi, Wataru Yashiro, Kentaro Uesugi, Yoshio Suzuki, Atsushi Momose and Toshihisa Takagi
    • Journal Title

      AIP Conference Proceedings

      Volume: 1365 Pages: 399-402

    • Related Report
      2010 Annual Research Report 2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] X-ray phase imaging and tomography using a fresnel zone plate and a transmission grating2011

    • Author(s)
      Wataru Yashiro, Sebastien Harasse, Hiroaki Kuwabara, Haruo Mizutani, Akihisa Takeuchi, Yoshio Suzuki and Atsushi Momose
    • Journal Title

      AIP conference Proceedings

      Volume: 1365 Pages: 317-320

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of computer tomography system for the soft X-ray microscope at Ritsumeikan University2011

    • Author(s)
      Takuji Ohigashi, Hiroki Fujii, Kishin Usui, Hidetoshi Namba, Haruo Mizutani, Kuniko Takemoto and Hiroshi Kihara
    • Journal Title

      IP conference Proceedings

      Volume: 1365 Pages: 124-127

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Hard-X-ray Phase-Difference Microscopy with a Low-Brilliance Laboratory X-ray Source2011

    • Author(s)
      Hiroaki Kuwabara, Wataru Yashiro, Sebastien Harasse, Haruo Mizutani and Atsushi Momose
    • Journal Title

      Appl. Phys. Express

      Volume: 4 Pages: 62502-62502

    • NAID

      10029000181

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] X-ray phase imaging and tomography using a fresnel zone plate and a transmission grating2011

    • Author(s)
      Yashiro W, Harasse S, Kuwabara H, Mizutani H, Takeuchi A, Suzuki Y, Momose A
    • Journal Title

      AIP Conference Proceedings

      Volume: 1366 Pages: 317-320

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of computer tomography system for the soft X-ray microscope at Ritsumeikan University2011

    • Author(s)
      Ohigashi T, Fujii H, Usui K, Namba H, Mizutani H, Takemoto K, Kihara H
    • Journal Title

      AIP Conference Proceedings

      Volume: 1365 Pages: 124-127

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] バイオイメージングにおけるX線ナノビームの活用2010

    • Author(s)
      水谷治央
    • Journal Title

      日本放射光学会誌

      Volume: 23 Pages: 195-201

    • NAID

      10026450581

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] High throughput and wide field of view EUV microscope for blur-free one-shot imaging of living organisms2010

    • Author(s)
      Takeo Ejima, Fumihiko Ishida, Hiromichi Murata, Mitsunori Toyoda, Tetsuo Harada, Toshihide Tsuru, Tadashi Hatano, Mihiro Yanagihara, Masaki Yamamoto and Haruo Mizutani
    • Journal Title

      Optics Express

      Volume: 18 Pages: 7203-7209

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] バイオイメージングにおけるX線ナノビームの活用2010

    • Author(s)
      水谷治央
    • Journal Title

      放射光学会誌

      Volume: 23 Pages: 198-201

    • NAID

      10026450581

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High throughput and wide field of view EUV microscope for blur-free one-shot imaging of living organisms2010

    • Author(s)
      Ejima T., Ishida F., Murata H., Toyoda M., Harada T., Tsuru T., Hatano T., Yanagihara M., Yamamoto M., Mizutani H.
    • Journal Title

      Optics Express 18

      Pages: 7203-7209

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] X-ray microscopy for neural circuit reconstruction2009

    • Author(s)
      Haruo Mizutani, Yoshihiro Takeda, Atsushi Momose, Akihisa Takeuchi and Toshihisa Takagi
    • Journal Title

      Journal of Physics Conf.

      Volume: Series 186 Pages: 12092-12092

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] X-ray microscopy for neural circuit reconstruction2009

    • Author(s)
      Mizutani H., Takeda Y., Momose A., Takeuchi A., Takagi T.
    • Journal Title

      Journal of Physics Conference Series 186

      Pages: 12092-12092

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] X-ray microscopy for neural circuit reconstruction2009

    • Author(s)
      Mizutani, H., Takeda, Y., Momose, A., Takeuchi, A., Takagi, T.
    • Journal Title

      Journal of Physics : Conference Series ((印刷中)掲載確定)

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Presentation] X線顕微鏡を用いて脳神経回路の配線図を解読する2011

    • Author(s)
      水谷治央
    • Organizer
      先端計測シンポジウム「軟X線顕微鏡の生体観察への応用と展開」
    • Place of Presentation
      片平さくらホール(仙台)
    • Year and Date
      2011-03-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] 高分解能X線トモグラフィー法による脳神経ネットワークの再構築を目指して2011

    • Author(s)
      水谷治央
    • Organizer
      第24回日本放射光学会年会・放射光科学合同シンポジウム「生命現象のイメージング」
    • Place of Presentation
      国際会議場(つくば)
    • Year and Date
      2011-01-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] X線顕微鏡によるマウス大脳皮質のナノ分解能3次元構造観察2011

    • Author(s)
      水谷治央
    • Organizer
      生理研研究会「電子顕微鏡機能イメージングの医学・生物学への応用」
    • Place of Presentation
      岡崎
    • Related Report
      2010 Final Research Report
  • [Presentation] べイズ推定に基づくX線CT再構成でのビームハードニング低減2011

    • Author(s)
      牧野貴樹、水谷治央、小塚淳、佐藤一誠
    • Organizer
      情報論的学習理論 (IBIS2011)
    • Place of Presentation
      奈良
    • Related Report
      2010 Final Research Report
  • [Presentation] X線ナノトモグラフィーによるマウス脳組織の3次元再構築2011

    • Author(s)
      水谷治央、相良洋、竹内晃久、大東琢治、高木利久
    • Organizer
      第88回日本生理学会大会
    • Place of Presentation
      横浜
    • Related Report
      2010 Final Research Report
  • [Presentation] X線顕微鏡を用いて脳神経回路の配線図を解読する2011

    • Author(s)
      水谷治央
    • Organizer
      先端計測シンポジウム「軟X線顕微鏡の生体観察への応用と展開」
    • Place of Presentation
      仙台
    • Related Report
      2010 Final Research Report
  • [Presentation] 高分解能X線トモグラフィー法による脳神経ネットワークの再構築を目指して2011

    • Author(s)
      水谷治央
    • Organizer
      第24回日本放射光学会年会・放射光科学合同シンポジウム「生命現象のイメージング」
    • Place of Presentation
      つくば
    • Related Report
      2010 Final Research Report
  • [Presentation] X線ナノトモグラフィーによるマウス脳組織の3次元再構築2011

    • Author(s)
      水谷治央、相良洋、竹内晃久、大東琢治、高木利久
    • Organizer
      第88回日本生理学会大会
    • Place of Presentation
      パシフィコ(横浜)
    • Related Report
      2010 Annual Research Report
  • [Presentation] X線顕微鏡によるマウス大脳皮質のナノ分解能3次元構造観察2011

    • Author(s)
      水谷治央
    • Organizer
      生理研研究会「電子顕微鏡機能イメージングの医学・生物学への応用」
    • Place of Presentation
      統合バイオサイエンスセンター(岡崎)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 大脳皮質シナプスの3次元観察に最適な軟X線光学系と試料サイズの検討2010

    • Author(s)
      水谷治央、大東琢治、難波秀利、竹本邦子、木原裕、高木利久
    • Organizer
      ナノテクノロジー放射光利用研究の最前線
    • Place of Presentation
      立命館大学(草津)
    • Year and Date
      2010-05-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] X-ray nanoscope with synapse resolution for neuronal circuit reconstruction2010

    • Author(s)
      Haruo Mizutani, Hirashi Sagara, Takuji Ohigashi and Toshihisa Takagi
    • Organizer
      40th Annual Meeting of the Society for Neuroscience (Neuroscience 2010)
    • Place of Presentation
      San Diego, USA
    • Related Report
      2010 Final Research Report
  • [Presentation] ナノ分解能X線トモグラフィーによるマウス大脳皮質の神経回路配線図解読2010

    • Author(s)
      水谷治央、相良洋、竹内晃久、大東琢治、矢代航、上杉健太朗、鈴木芳生、百生敦、高木利久
    • Organizer
      第33回日本神経科学大会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] Nano-resolution X-ray tomography for deciphering wiring diagram of mammalian brain2010

    • Author(s)
      Haruo Mizutani, Hiroshi Sagara, Akihisa Takeuchi, Takuji Ohigashi, Wataru Yashiro, Kentaro Uesugi, Yoshio Suzuki, Atsushi Momose and Toshihisa Takagi
    • Organizer
      10th International Conference on X-Ray Microscopy
    • Place of Presentation
      Chicago, USA
    • Related Report
      2010 Final Research Report
  • [Presentation] Development of wide field of view EUV microscope using normal-incident multilayer optics with LPP light source2010

    • Author(s)
      Fumihiko Ishida, Takeo Ejima, Mitsunori Toyoda, Toshihide Tsuru, Tadashi Hatano, Mihiro Yanagihara and Haruo Mizutani
    • Organizer
      10th International Conference on X-Ray Microscopy
    • Place of Presentation
      Chicago, USA
    • Related Report
      2010 Final Research Report
  • [Presentation] 大脳皮質シナプスの3次元観察に最適な軟X線光学系と試料サイズの検討2010

    • Author(s)
      水谷治央、大東琢治、難波秀利、竹本邦子、木原裕、高木利久
    • Organizer
      ナノテクノロジー放射光利用研究の最前線2009
    • Place of Presentation
      滋賀県草津
    • Related Report
      2010 Final Research Report
  • [Presentation] 透過型軟X線反射多層膜顕微鏡を用いた生体試料の観察2010

    • Author(s)
      石田史彦、江島丈雄、柳原美廣、水谷治央
    • Organizer
      第57回日本応用物理学関係連合講演会
    • Place of Presentation
      平塚
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 形態多様性理解のための脊椎動物およびその近縁種の3次元再構築2010

    • Author(s)
      水谷治央、上杉健太朗、窪川かおる、星野真人、高木利久
    • Organizer
      平成20年度・21年度Spring-8重点メディカルバイオ領域課題成果報告会
    • Place of Presentation
      神戸
    • Related Report
      2010 Final Research Report
  • [Presentation] Nano-resolution X-ray tomography for deciphering wiring diagram of mammalian brain2010

    • Author(s)
      Mizutani H, Sagara H, Takeuchi A, Ohigashi T, Yashiro W, Uesugi K, Suzuki Y, Momose A, Takagi T
    • Organizer
      10th International Conference on X-Ray Microscopy
    • Place of Presentation
      Chicago、USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] X-ray phase imaging using a Fresnel zone plate and a phase grating2010

    • Author(s)
      Yashiro W, Kuwabara H, Mizutani H, Takeuchi A, Suzuki Y, Momose A
    • Organizer
      10th International Conference on X-Ray Microscopy
    • Place of Presentation
      Chicago、USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] Development of a computer tomography system for the soft X-ray microscopy at Ritsumeikan University2010

    • Author(s)
      Ohigashi T, Fujii H, Usui K, Namba H, Mizutani H, Takemoto K, Kihara H
    • Organizer
      10th International Conference on X-Ray Microscopy
    • Place of Presentation
      Chicago、USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] Development of wide field of view EUV microscope using normal-incident multilayer optics with LPP light source2010

    • Author(s)
      Ishida F, Ejima T, Toyoda M, Tsuru T, Hatano T, Yanagihara M, Mizutani H
    • Organizer
      10th International Conference on X-Ray Microscopy
    • Place of Presentation
      Chicago、USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] X-ray nanoscope with synapse resolution for neuronal circuit reconstruction2010

    • Author(s)
      Mlzutani H, Sagara H, Ohigashi T, Takagi T
    • Organizer
      40th Annual Meeting of the Society for Neuroscience
    • Place of Presentation
      San Diego、USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] ナノ分解能X線トモグラフィーによるマウス大脳皮質の神経回路配線図解読2010

    • Author(s)
      水谷治央、相良洋、竹内晃久、大東琢治、矢代航、上杉健太朗、鈴木芳生、百生敦、高木利久
    • Organizer
      第33回日本神経科学大会
    • Place of Presentation
      コンベンションセンター(神戸)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 軟X線結像型顕微鏡を用いたマウス大脳皮質の高分解能観察2009

    • Author(s)
      水谷治央、大東琢治、藤井宏樹、難波秀利、竹本邦子、木原裕、高木利久
    • Organizer
      ナノテクノロジー放射光利用研究の最前線2008
    • Place of Presentation
      つくば
    • Year and Date
      2009-05-08
    • Related Report
      2009 Annual Research Report
  • [Presentation] バイオイメージングにおけるX線ナノビームの活用2009

    • Author(s)
      水谷治央
    • Organizer
      X線ナノ集光技術研究会
    • Place of Presentation
      吹田
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] X-ray nano-tomography for neural circuit reconstruction2009

    • Author(s)
      Haruo Mizutani, Yoshihiro Takeda, Atsushi Momose, Akihisa Takeuchi and Toshihisa Takagi
    • Organizer
      36th International Congress of Physiological Sciences (IUPS 2009)
    • Place of Presentation
      Kyoto, Japan
    • Related Report
      2010 Final Research Report
  • [Presentation] X線ナノトモグラフィーを用いた大規模神経ネットワークの解読2009

    • Author(s)
      水谷治央、高木利久
    • Organizer
      脳と心のメカニズム第9回冬のワークショップ
    • Place of Presentation
      留寿都
    • Related Report
      2010 Final Research Report
  • [Presentation] X線ナノトモグラフィーによる大規模神経回路網の再構築2009

    • Author(s)
      谷治央、高木利久
    • Organizer
      定量生物の会第1回年会
    • Place of Presentation
      東京
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] レーザープラズマ軟X線顕微鏡による生細胞の観察2009

    • Author(s)
      加道雅孝、石野雅彦、錦野將元、長谷川登、大場俊幸、森道昭、西内満美子、篠原邦夫、水谷治央、山本容正、平井到、保智己、安田恵子、金城康人
    • Organizer
      電気学会光・量子デバイス研究会
    • Place of Presentation
      神戸
    • Related Report
      2009 Annual Research Report
  • [Presentation] X-ray nano-tomography for neural circuit reconstruction2009

    • Author(s)
      Haruo Mizutani, Yoshihiro Takeda, Atsushi Momose, Akihisa Takeuchi, Toshihisa Takagi
    • Organizer
      36th International Congress of Physiological Sciences(IUPS 2009)
    • Place of Presentation
      京都
    • Related Report
      2009 Annual Research Report
  • [Presentation] 立命館大学SRセンター軟X線顕微鏡による生物観察の最近の成果2009

    • Author(s)
      竹本邦子、大東琢治、藤井宏樹、新田目啓敬、水谷治央、一瀬諭、難波秀利、木原裕
    • Organizer
      第18回日本バイオイメージング学会学術集会
    • Place of Presentation
      岡山
    • Related Report
      2009 Annual Research Report
  • [Presentation] X-ray microscopy for neural circuit reconstruction2008

    • Author(s)
      Haruo Mizutani, Yoshihiro Takeda, Atsushi Momose, Akihisa Takeuchi and Toshihisa Takagi
    • Organizer
      9th International Conference on X-Ray Microscopy
    • Place of Presentation
      Zurich、Switzerland
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Presentation] 神経回路網再構築のための新たなX線イメージング法2008

    • Author(s)
      水谷治央、武田佳彦、百生敦、竹内晃久、高木利久
    • Organizer
      第31回日本神経科学学会
    • Place of Presentation
      東京
    • Related Report
      2010 Final Research Report 2008 Annual Research Report
  • [Remarks]

    • URL

      http://www.connectome.jp/

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://www.connectome.jp/

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 画像再構成装置及びプログラム2011

    • Inventor(s)
      小塚淳、牧野貴樹、水谷治央
    • Industrial Property Rights Holder
      東京大学
    • Filing Date
      2011-06-22
    • Related Report
      2010 Final Research Report
  • [Patent(Industrial Property Rights)] 画像再構成装置及びプログラム2011

    • Inventor(s)
      小塚淳、牧野貴樹、水谷治央
    • Industrial Property Rights Holder
      東京大学
    • Industrial Property Number
      2011-138833
    • Filing Date
      2011-06-22
    • Related Report
      2010 Annual Research Report

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Published: 2008-04-01   Modified: 2018-03-28  

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