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Chromosome Orchestration System

Administrative Group

Project AreaChromosome Orchestration System
Project/Area Number 15H05970
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

Shirahige Katsuhiko  東京大学, 定量生命科学研究所, 教授 (90273854)

Co-Investigator(Kenkyū-buntansha) 伊藤 武彦  東京工業大学, 生命理工学研究科, 教授 (90501106)
Project Period (FY) 2015-06-29 – 2020-03-31
Project Status Completed (Fiscal Year 2019)
Budget Amount *help
¥68,380,000 (Direct Cost: ¥52,600,000、Indirect Cost: ¥15,780,000)
Fiscal Year 2019: ¥9,230,000 (Direct Cost: ¥7,100,000、Indirect Cost: ¥2,130,000)
Fiscal Year 2018: ¥13,910,000 (Direct Cost: ¥10,700,000、Indirect Cost: ¥3,210,000)
Fiscal Year 2017: ¥9,230,000 (Direct Cost: ¥7,100,000、Indirect Cost: ¥2,130,000)
Fiscal Year 2016: ¥13,910,000 (Direct Cost: ¥10,700,000、Indirect Cost: ¥3,210,000)
Fiscal Year 2015: ¥22,100,000 (Direct Cost: ¥17,000,000、Indirect Cost: ¥5,100,000)
Keywords染色体高次構造 / 染色体機能 / ゲノム情報 / 染色体構築 / ゲノム構造 / 生命情報 / 数理解析 / データベース / モデル化 / ゲノム / 発現制御 / 生態生命情報学 / 染色体構造 / 染色体動態 / 染色体構築原理 / 生体生命情報学
Outline of Final Research Achievements

In this study, we aimed to understand the mechanism of the harmony of chromosome functions (Chromosome Orchestration System: Chromosome OS) through the reconstruction of three-dimensional structure of chromosomes and the acquisition of four-dimensional information. The knowledge obtained in this area has been integrated into a chromosome OS information platform, compiled into a database, and made available to the public. It is expected to contribute to the further development of life science as a whole, not only in the fields of epigenetics and chromosome biology, but also in the fields of drug discovery, clinical practice, etc. Model chromosomes, which were constructed through biochemical efforts in this field, have also caused a stir in the current genomics-oriented chromosomal field, and have laid the groundwork for biochemical approaches to delving deeper into the conundrum of chromosome structure control.

Academic Significance and Societal Importance of the Research Achievements

本研究課題を通じて構築された染色体OS情報プラットフォームは、今後、染色体動態をゲノム学的視点から理解する基盤情報となるだけでなくエピゲノム、染色体分野をはじめ創薬、再生医療も含めた我が国の生命科学研究全般のさらなる発展に資することが期待できる。また、本分野で生化学的な取り組みにより構築されたモデル染色体も、現在のゲノム学中心の染色体高次構造研究に一石を投じ、染色体3D,4D構造の制御という難問に生化学的に迫ることが可能な基盤を築いた。

Report

(6 results)
  • 2019 Annual Research Report   Final Research Report ( PDF )
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • Research Products

    (124 results)

All 2020 2019 2018 2017 2016 2015 Other

All Int'l Joint Research (28 results) Journal Article (38 results) (of which Int'l Joint Research: 15 results,  Peer Reviewed: 38 results,  Open Access: 32 results,  Acknowledgement Compliant: 9 results) Presentation (33 results) (of which Int'l Joint Research: 28 results,  Invited: 30 results) Remarks (7 results) Patent(Industrial Property Rights) (4 results) Funded Workshop (14 results)

  • [Int'l Joint Research] コペンハーゲン大学(デンマーク)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] オックスフォード大学/クリック研究所/エジンバラ大学(英国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] FMI(スイス)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] EMBL(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] カロリンスカ研究所(スウェーデン)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Univ. Copenhagen(デンマーク)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] オックスフォード大学/Crick研究所/エジンバラ大学(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] FMI(スイス)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] EMBL(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] カロリンスカ研究所(スウェーデン)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] クリック研究所/アバディーン大学/オックスフォード大学(英国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ペンシルバニア大学(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] カロリンスカ研究所(スウェーデン)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] EMBL(ドイツ)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] ニュージャージ医科大学/フィラデルフィア小児病院(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] オックスフォード大学/アバディーン大学/The Francis Crick Institute(英国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] カロリンスカ研究所(スウェーデン)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Seoul National大学/Chung-Ang大学(韓国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] MFPL/IMP(オーストリア)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] ニュージャージー医科大学/フィラデルフィア小児病院(米国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] オックスフォード大学/アバディーン大学/The Francis Crick Institute(英国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Karolinska Institutet(スウェーデン)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Seoul National 大学/Chung-Ang 大学(韓国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] MFPL/IMPIMP(オーストリア)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Real-time tracking reveals catalytic roles for the two DNA binding sites of Rad512020

    • Author(s)
      Ito K, Murayama Y, Kurokawa Y, Kanamaru S, Kokabu Y, Maki T, Argunhan B, Tsubouchi H, Ikeguchi M, Takahashi M, Iwasaki H*
    • Journal Title

      Nat Commun

      Volume: -

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Two auxiliary factors promote Dmc1-driven DNA strand exchange via stepwise mechanisms2020

    • Author(s)
      Tsubouchi Hideo、Argunhan Bilge、Ito Kentaro、Takahashi Masayuki、Iwasaki Hiroshi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 115 Issue: 22 Pages: 17419-17419

    • DOI

      10.1073/pnas.1917419117

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes2020

    • Author(s)
      Ochi Y, Ogawa Seishi., et al.
    • Journal Title

      Cancer Discov

      Volume: - Issue: 6 Pages: 836-853

    • DOI

      10.1158/2159-8290.cd-19-0982

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] CDK1-mediated CENP-C phosphorylation modulates CENP-A binding and mitotic2019

    • Author(s)
      Watanabe R, Hara M, Okumura EI, Herv S, Fachinetti D, Ariyoshi M, Fukagawa T
    • Journal Title

      J Cell Biol.

      Volume: 218 Issue: 12 Pages: 4042-4062

    • DOI

      10.1083/jcb.201907006

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Centromere maintenance during DNA replication2019

    • Author(s)
      Hara Masatoshi、Fukagawa Tatsuo
    • Journal Title

      Nature Cell Biology

      Volume: 21 Issue: 6 Pages: 669-671

    • DOI

      10.1038/s41556-019-0335-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP2019

    • Author(s)
      Yoshimura Dai、Kajitani Rei、Gotoh Yasuhiro、Katahira Katsuyuki、Okuno Miki、Ogura Yoshitoshi、Hayashi Tetsuya、Itoh Takehiko
    • Journal Title

      Microbial Genomics

      Volume: 5 Issue: 5

    • DOI

      10.1099/mgen.0.000261

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A. Shinohara, Human RAD51 paralogue, SWSAP1, fosters RAD51 filament by regulating the anti-recombinase, FIGNL1 AAA+ ATPase.2019

    • Author(s)
      Matsuzaki, K., Kondo, S., Ishikawa, T., and A. Shinohara,
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 1407-1407

    • DOI

      10.1038/s41467-019-09190-1

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Folding the genome into mitotic chromosomes2019

    • Author(s)
      Motoko Takahashi, Toru Hirota
    • Journal Title

      Current Opinion in Cell Biology

      Volume: 60 Pages: 19-26

    • DOI

      10.1016/j.ceb.2019.03.005

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comprehensive epigenome characterization reveals diverse transcriptional regulation across human vascular endothelial cells2019

    • Author(s)
      Nakato R, Wada Y, Nakaki R, Nagae G, Katou Y, Tsutsumi S, Nakajima N, Fukuhara H, Iguchi A, Kohro T, Kanki Y, Saito Y, Kobayashi M, Izumi-Taguchi A, Osato N, Tatsuno K, Kamio A, Hayashi-Takanaka Y, Wada H, Ohta S, Aikawa M, Nakajima H, Nakamura M, McGee RC, Heppner KW, Kawakatsu T, Genno M, Yanase H, Kume H, et al.
    • Journal Title

      Epigenetics & Chromatin

      Volume: 12 Issue: 1 Pages: 77-77

    • DOI

      10.1186/s13072-019-0319-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Missense Mutations in NKAP Cause a Disorder of Transcriptional Regulation Characterized by Marfanoid Habitus and Cognitive Impairment2019

    • Author(s)
      Fiordaliso Sarah K.、.....Shirahige Katsuhiko、Izumi Kosuke
    • Journal Title

      The American Journal of Human Genetics

      Volume: 105 Issue: 5 Pages: 987-995

    • DOI

      10.1016/j.ajhg.2019.09.009

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.2019

    • Author(s)
      Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T
    • Journal Title

      Nat Commun

      Volume: - Issue: 1 Pages: 1702-1702

    • DOI

      10.1038/s41467-019-09575-2

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pulmonary phagocyte-derived NPY controls the pathology of severe influenza virus infection.2018

    • Author(s)
      Fujiwara S., Hoshizaki M., Ichida Y., Lex D., Kuroda E., Ishii KJ., Magi S., Okada M., Takao H., Gando M., Imai H., Hara R., Herzog H., Yoshimura A., Okamura H., Penninger JM., Slutsky AS., Uhlig S., Kuba K., and Imai Y.
    • Journal Title

      Nature Microbiology

      Volume: 4(2) Issue: 2 Pages: 258-268

    • DOI

      10.1038/s41564-018-0289-1

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multiple phosphorylations control recruitment of the KMN network onto kinetochores.2018

    • Author(s)
      Hara M, Ariyoshi M, Okumura EI, Hori T, Fukagawa T.
    • Journal Title

      Nat Cell Biol

      Volume: 20 Issue: 12 Pages: 1378-1388

    • DOI

      10.1038/s41556-018-0230-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nucleosomes around a mismatched base pair are excluded via an Msh2-dependent reaction with the aid of SNF2 family ATPase Smarcad1.2018

    • Author(s)
      Terui R, Nagao K, Kawasoe Y, Taki K, Higashi TL, Tanaka S, Nakagawa T, Obuse C, Masukata H, Takahashi TS
    • Journal Title

      Genes & development

      Volume: 32(11-12) Issue: 11-12 Pages: 806-821

    • DOI

      10.1101/gad.310995.117

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA polymerase e-dependent modulation of the pausing property of CMG helicase at the barrier.2018

    • Author(s)
      Hizume, K., Endo, S., Muramatsu, S., Kobayashi, T. and Araki, H.
    • Journal Title

      Genes & Dev

      Volume: 32 Issue: 19-20 Pages: 1315-1320

    • DOI

      10.1101/gad.317073.118

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Re-evaluating the Localization of Sperm-Retained Histones Revealed the Modification-Dependent Accumulation in Specific Genome Regions.2018

    • Author(s)
      Yamaguchi K, Hada M, Fukuda Y, Inoue E, Makino Y, Katou Y, Shirahige K, Okada Y.
    • Journal Title

      Cell Rep.

      Volume: 23(13) Issue: 13 Pages: 3920-3932

    • DOI

      10.1016/j.celrep.2018.05.094

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Temporal Regulation of ESCO2 Degradation by the MCM Complex, the CUL4-DDB1-VPRBP Complex, and the Anaphase-Promoting Complex.2018

    • Author(s)
      Minamino M, Tei S, Negishi L, Kanemaki MT, Yoshimura A, Sutani T, Bando M, Shirahige K.
    • Journal Title

      Curr Biol.

      Volume: 28(16) Issue: 16 Pages: 2665-2672

    • DOI

      10.1016/j.cub.2018.06.037

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A chromatin integration labelling method enables epigenomic profiling with lower input2018

    • Author(s)
      Harada Akihito、Maehara Kazumitsu、Handa Tetsuya、Arimura Yasuhiro、Nogami Jumpei、Hayashi-Takanaka Yoko、Shirahige Katsuhiko、Kurumizaka Hitoshi、Kimura Hiroshi、Ohkawa Yasuyuki
    • Journal Title

      Nature Cell Biology

      Volume: 21 Issue: 2 Pages: 287-296

    • DOI

      10.1038/s41556-018-0248-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Two three-strand intermediates are processed during Rad51-driven DNA strand exchange.2018

    • Author(s)
      Ito K, Murayama Y, Takahashi M, Iwasaki H.
    • Journal Title

      Nat Struct Mol Biol

      Volume: 25 Issue: 1 Pages: 29-36

    • DOI

      10.1038/s41594-017-0002-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitotic chromosome assembly despite nucleosome depletion in Xenopus egg extracts.2017

    • Author(s)
      Shintomi K, Inoue F, Watanabe H, Ohsumi K, Ohsugi M, Hirano T.
    • Journal Title

      Science

      Volume: 356 Issue: 6344 Pages: 1284-1287

    • DOI

      10.1126/science.aam9702

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Association of M18BP1/KNL2 with CENP-A Nucleosome Is Essential for Centromere Formation in Non-mammalian Vertebrates2017

    • Author(s)
      Tetsuya Hori, Wei-Hao Shang, Masatoshi Hara, Mariko Ariyoshi, Yasuhiro Arimura, Risa Fujita, Hitoshi Kurumizaka, Tatsuo Fukagawa
    • Journal Title

      Developmental Cell

      Volume: 42 Issue: 2 Pages: 181-189

    • DOI

      10.1016/j.devcel.2017.06.019

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Pre‐initiation complex assembly functions as a molecular switch that splits the Mcm2‐7 double hexamer2017

    • Author(s)
      Miyazawa-Onami, M., Araki, H. and Tanaka, S
    • Journal Title

      EMBO Rep.

      Volume: 18 Issue: 10 Pages: 1752-1761

    • DOI

      10.15252/embr.201744206

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Decreased cohesion in the brain leads to defective synapse development and anxiety-related behavior2017

    • Author(s)
      Fujita Y, Masuda K, Bando M, Nakato R, Katou Y, Tanaka T, Nakayama M, Takao K, Miyakawa T, Tanaka T, Ago Y, Hashimoto H, Shirahige K, Yamashita T.
    • Journal Title

      J. Exp. Med.

      Volume: 印刷中 Issue: 5 Pages: 1431-1452

    • DOI

      10.1084/jem.20161517

    • Related Report
      2017 Annual Research Report 2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of a variant-specific phosphorylation of TH2A during spermiogenesis.2017

    • Author(s)
      Hada M, Masuda K, Yamaguchi K, Shirahige K, Okada Y.
    • Journal Title

      Sci Rep.

      Volume: 7 Issue: 1 Pages: 46228-46228

    • DOI

      10.1038/srep46228

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ChIP-seq Analysis of Condensin Complex in Cultured Mammalian Cells.2017

    • Author(s)
      Sakata T, Shirahige K, Sutani T.
    • Journal Title

      Methods Mol Biol.

      Volume: 1515 Pages: 257-271

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Chromatin determinants of the inner-centromere rely on replication factors with functions that impart cohesion.2016

    • Author(s)
      Abe T, Kawasumi, R. Arakawa, H. Hori, T. Shirahige, K. Losada, A. Fukagawa, T. Branzei, D.
    • Journal Title

      Oncotarget

      Volume: 7 Issue: 42 Pages: 67934-67947

    • DOI

      10.18632/oncotarget.11982

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Attaching Accessory Devices to the Replisome.2016

    • Author(s)
      Sutani T, Shirahige K.
    • Journal Title

      Mol Cell.

      Volume: 63(3) Issue: 3 Pages: 347-8

    • DOI

      10.1016/j.molcel.2016.07.017

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Physical Association of Saccharomyces cerevisiae Polo-like Kinase Cdc5 with Chromosomal Cohesin Facilitates DNA Damage Response.2016

    • Author(s)
      Pakchuen S, Ishibashi M, Takakusagi E, Shirahige K, Sutani T.
    • Journal Title

      J Biol Chem.

      Volume: 291(33) Issue: 33 Pages: 17228-46

    • DOI

      10.1074/jbc.m116.727438

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation.2016

    • Author(s)
      Nakato R, Shirahige K.
    • Journal Title

      Brief Bioinform

      Volume: 12 Pages: 1-12

    • DOI

      10.1093/bib/bbw023

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] DNMT3A R882 mutants interact with polycomb proteins to block haematopoietic stem and leukaemic cell differentiation.2016

    • Author(s)
      Koya J, Kataoka K, Sato T, Bando M, Kato Y, Tsuruta-Kishino T, Kobayashi H, Narukawa K, Miyoshi H, Shirahige K, Kurokawa M.
    • Journal Title

      Nat Commun.

      Volume: 7 Issue: 1 Pages: 10924-10924

    • DOI

      10.1038/ncomms10924

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Microarray expression analysis of genes involved in innate immune memory in peritoneal macrophages.2015

    • Author(s)
      Yoshida K, Renard-Guillet C, Inoue K, Shirahige K, Okada-Hatakeyama M, Ishii S.
    • Journal Title

      Genom Data.

      Volume: 7 Pages: 90-1

    • DOI

      10.1016/j.gdata.2015.11.028

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Condensin Relocalization from Centromeres to Chromosome Arms Promotes Top2 Recruitment during Anaphase.2015

    • Author(s)
      Leonard J, Sen N, Torres R, Sutani T, Jarmuz A, Shirahige K, Aragon L.
    • Journal Title

      Cell Rep.

      Volume: 13(11) Issue: 11 Pages: 2336-44

    • DOI

      10.1016/j.celrep.2015.11.041

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.2015

    • Author(s)
      Yoshida K, Maekawa T, Zhu Y, Renard-Guillet C, Ishibashi K,Chatton B, Inoue K, Uchiyama T, Yamada T, Ohno N, Shirahige K, Okada-Hatakeyama M, Ishii S.
    • Journal Title

      Nat Immunol.

      Volume: 16(10) Issue: 10 Pages: 1034-43

    • DOI

      10.1038/ni.3257

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Replication-Coupled PCNA Unloading by the Elg1 Complex Occurs Genome-wide and Requires Okazaki Fragment Ligation2015

    • Author(s)
      Takashi Kubota, Yuki Katou, Ryuichiro Nakato, Katsuhiko Shirahige, Anne D. Donaldson
    • Journal Title

      Cell Reports

      Volume: 12 Issue: 5 Pages: 774-787

    • DOI

      10.1016/j.celrep.2015.06.066

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Condensin targets and reduces unwound DNA structures associated with transcription in mitotic chromosome condensation2015

    • Author(s)
      Takashi Sutani, Toyonori Sakata, Ryuichiro Nakato, Koji Masuda, Mai Ishibashi, Daisuke Yamashita, Yutaka Suzuki, Tatsuya Hirano, Masashige Bando, Katsuhiko Shirahige
    • Journal Title

      Nature Communications

      Volume: 6 Issue: 1 Pages: 1-13

    • DOI

      10.1038/ncomms8815

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Deubiquitinating Enzyme USP7 Regulates Androgen Receptor Activity by Modulating Its Binding to Chromatin2015

    • Author(s)
      Shu-Ting Chen, Maiko Okada, Ryuichiro Nakato, Kosuke Izumi, Masashige Bando and Katsuhiko Shirahige
    • Journal Title

      Journal of Biological Chemistry

      Volume: 290 Issue: 35 Pages: 21713-21723

    • DOI

      10.1074/jbc.m114.628255

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Assembly of Slx4 signaling complexes behind DNA replication forks2015

    • Author(s)
      Attila Balint, TaeHyung Kim, David Gallo, Jose Renato Cussiol, Francisco M Bastos de Oliveira, Askar Yimit, Jiongwen Ou, Ryuichiro Nakato, Alexey Gurevich, Katsuhiko Shirahige, Marcus B Smolka, Zhaolei Zhang, Grant W Brown
    • Journal Title

      The EMBO Journal

      Volume: 34 Issue: 16 Pages: 2182-2197

    • DOI

      10.15252/embj.201591190

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Esco1 Acetylates Cohesin via a Mechanism Different from That of Esco22015

    • Author(s)
      Masashi Minamino, Mai Ishibashi, Ryuichiro Nakato, Kazuhiro Akiyama, Hiroshi Tanaka, Yuki Kato, Lumi Negishi, Toru Hirota, Takashi Sutani, Masashige Bando, Katsuhiko Shirahige
    • Journal Title

      Current Biology

      Volume: 25 Issue: 13 Pages: 1694-1706

    • DOI

      10.1016/j.cub.2015.05.017

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Human RAD51 paralog, SWSAP1, promotes RAD51 assembly by regulating the anti-recombinase, FIGNL1 AAA+ ATPase2019

    • Author(s)
      Akira Shinohara
    • Organizer
      EMBO workshop on meiosis
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Human RAD51 paralog, SWSAP1, promotes RAD51 assembly by regulating the anti-recombinase, FIGNL1 AAA+ ATPase2019

    • Author(s)
      Akira Shinohara
    • Organizer
      FASEB meeting on recombination & genome rearrangement
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The homeostatic control of chromosomes2019

    • Author(s)
      Toru Hirota
    • Organizer
      The 71st Annual meeting of the Japan Society for Cell Biology
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] A robust control of mitotic transitions prevents chromosome missegregation2019

    • Author(s)
      Toru Hirota
    • Organizer
      International Symposium Cancer Etiology
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Immediate response to chromosomal aneuploidy2019

    • Author(s)
      Kojiro Ishii
    • Organizer
      Chromosome Orchestration System
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] CDK1 Regulates CENP-A-CENP-C Interaction In Vertebrate Kinetochore2019

    • Author(s)
      Tatsuo Fukagawa
    • Organizer
      ASCB/EMBO 2019 Meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Activation of Mre11 endonuclease by Ctp1 in Schizosaccharomyces pombe2019

    • Author(s)
      Hiroshi Iwasaki
    • Organizer
      EMBO Workshop on Fission Yeast, The 10th International Meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Requirements for replication fork pausing at the barriers2019

    • Author(s)
      Hiroyuki Araki
    • Organizer
      The 2019 meeting on Eukaryotic DNA Replication and Genome Maintenance
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Formation and progression of replication forks in budding yeast; replication fork pausing at the barriers2019

    • Author(s)
      Hiroyuki Araki
    • Organizer
      The 44th FEBS Congress
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Condensin-based chromosome organization: new insights from in vitro assays2019

    • Author(s)
      Tatsuya Hirano
    • Organizer
      ASCB | EMBO 2019 meeting
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The two faces of condensin I2019

    • Author(s)
      Tatsuya Hirano
    • Organizer
      EMBO Workshop on “SMC proteins”
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Condensin-based chromosome organization: new insights from cell-free extracts2019

    • Author(s)
      Tatsuya Hirano
    • Organizer
      Gordon Research Conference on “Chromosome Dynamics”
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transcriptional Regulation by Cohesin and its loader2019

    • Author(s)
      Katsuhiko Shirahige
    • Organizer
      EMBO Workshop on “SMC proteins”
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Transcriptional Regulation by Cohesin and its loader2019

    • Author(s)
      KATSUHIKO SHIRAHIGE
    • Organizer
      Chromosome dynamics 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Formation, progression and stalling of bidirectional replication forks in budding yeast2018

    • Author(s)
      Araki, H
    • Organizer
      EMBO/EMBL symposium: DNA replication: From basic biology to disease
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Rapid protein depletion in human cells by the auxin-inducible degron (AID) technology2018

    • Author(s)
      Kanemaki M
    • Organizer
      Hong Kong University
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Centromere Dynamics During Mitotic progression2018

    • Author(s)
      Fukagawa T
    • Organizer
      Gordon Research Conference on Centromere Biology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Assembling mitotic chromosomes in vitro2018

    • Author(s)
      Hirano T
    • Organizer
      The 11th 3R&3C Symposium
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] De novo establishment and epigenetic maintenance of centromere chromatin on alpha-satellite DNA2018

    • Author(s)
      Masumoto H
    • Organizer
      The 2018 "Centromere Biology" Gordon Research Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Meiotic prophase pathway of cleavage-independent removal of cohesin from chromosomes during late prophase I2018

    • Author(s)
      Shinohara A
    • Organizer
      Gordon Research Conference on Meiosis
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Regulation of Transcription by Cohesin and its loader2018

    • Author(s)
      Shirahige K
    • Organizer
      Principles of Chromosome Structure and Function
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Transcriptional regulation by cohesin and its loader2017

    • Author(s)
      katsuhiko Shirahige
    • Organizer
      第9回NAGOYAグローバルリトリート
    • Place of Presentation
      愛知健康プラザ、愛知県大府市
    • Year and Date
      2017-02-10
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Condensin-based chromosome organization2017

    • Author(s)
      Tatsuya Hirano
    • Organizer
      Keystone Symposium on “Genomic Instability and DNA Repair/DNA Replication and Recombination”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Condensin-based chromosome organization2017

    • Author(s)
      Tatsuya Hirano
    • Organizer
      Gordon Research Conference “Chromosome Dynamics”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Control of Rad51/Dmc1 assembly by Rad51 mediators2017

    • Author(s)
      Akira Shinohara
    • Organizer
      FASEB meeting on recombination & genome rearrangement,
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Analysis of human chromosome organization mediated by cohesin complex2017

    • Author(s)
      Toyonori Sakata, Katsuhiko Shirahige
    • Organizer
      Genetic Networks (GN) Workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Organization of 3D genome structure mediated by cohesin and CTCF2017

    • Author(s)
      Toyonori Sakata, Katsuhiko Shirahige
    • Organizer
      EMBO Workshop “Evolution in the Time of Genome Architecture”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] DNA 複製の過去・現在・未来 - ゲノム複製からエピゲノム複製へ2016

    • Author(s)
      白髭克彦
    • Organizer
      岡崎フラグメント50周年シンポジウム
    • Place of Presentation
      名古屋大学、愛知県名古屋市
    • Year and Date
      2016-12-21
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Transcriptional regulation by cohesin and its loader2016

    • Author(s)
      katsuhiko Shirahige
    • Organizer
      CdLS symposium
    • Place of Presentation
      アメリカ、フロリダ
    • Year and Date
      2016-09-06
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] How cohesin and its loader regulate transcription? Clues from newly identi ed disease andin vitro reconstitution system2016

    • Author(s)
      katsuhiko Shirahige
    • Organizer
      トロント大学のセミナー
    • Place of Presentation
      カナダ、トロント
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 希少疾患と癌、その共通の分子病態から学ぶ転写伸長因子コヒーシンの役割2016

    • Author(s)
      白髭克彦
    • Organizer
      愛知県がんセンター セミナー
    • Place of Presentation
      愛知県がんセンター、愛知県名古屋市
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Transcriptional regulation by Cohesin and its loader2015

    • Author(s)
      Katsuhiko Shirahige
    • Organizer
      International conference of the Korean Society for molecular and cellular biology
    • Place of Presentation
      Soul、Korea
    • Year and Date
      2015-09-22
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The crude Lysate system to analyze transcriptional regulation by cohesin loader2015

    • Author(s)
      Katsuhiko Shirahige
    • Organizer
      CSH Mechanisms of Eukaryotic Transcription
    • Place of Presentation
      NY, USA
    • Year and Date
      2015-08-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Remarks] 東大、遺伝情報を次の世代に正確に伝える仕組みを発見

    • URL

      https://www.nikkei.com/article/DGXLRSP487269_X00C18A8000000/

    • Related Report
      2018 Annual Research Report
  • [Remarks] 遺伝子の入れ替えをコントロールするメカニズムを解明-ゲノム編集や不妊治療への応用に期待ー

    • URL

      http://www.protein.osaka-u.ac.jp/achievement/pressrelease190404

    • Related Report
      2018 Annual Research Report
  • [Remarks] 定説を覆す!染色体の分配のしくみに、鍵となる新たな分子の働きを発見

    • URL

      https://resou.osaka-u.ac.jp/ja/research/2018/20181113_1

    • Related Report
      2018 Annual Research Report
  • [Remarks] 相同組換えのDNA鎖交換反応開始の分子機構を解明 Swi5-Sfr1によるRad51のDNA結合制御

    • URL

      https://www.titech.ac.jp/news/2018/042607.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 邪魔者をどかせると見えてきた、精子ヒストンの局在と規則性;新技術で精子ヒストンマップを作成

    • URL

      http://www.iam.u-tokyo.ac.jp/press_release/180627-2/

    • Related Report
      2018 Annual Research Report
  • [Remarks] 平野・大杉班がScience誌に論文を発表しました

    • URL

      http://www.chromosomeos.com/news/577

    • Related Report
      2017 Annual Research Report
  • [Remarks] 染色体オーケストレーションシステム

    • URL

      http://www.chromosomeos.com/

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
  • [Patent(Industrial Property Rights)] 遺伝性乳癌卵巣癌症候群の治療薬のスクリーニング方法2018

    • Inventor(s)
      岩﨑博史、坪内英生、伊藤武彦,梶谷嶺,リハッティマルダン、韓龍雲
    • Industrial Property Rights Holder
      東京工業大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 微生物由来カルボキシペプチダーゼの高血圧改善、心不全改善、急性呼吸窮迫症候群改善作用2018

    • Inventor(s)
      今井由美子
    • Industrial Property Rights Holder
      今井由美子
    • Industrial Property Rights Type
      特許
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 神経ペプチドNPYとその受容体の抗インフルエンザ作用2018

    • Inventor(s)
      今井由美子
    • Industrial Property Rights Holder
      今井由美子
    • Industrial Property Rights Type
      特許
    • Filing Date
      2018
    • Related Report
      2018 Annual Research Report
  • [Patent(Industrial Property Rights)] 遺伝性乳癌卵巣癌症候群の治療薬のスクリーニング方法2017

    • Inventor(s)
      岩崎博史,伊藤武彦
    • Industrial Property Rights Holder
      岩崎博史,伊藤武彦
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2018-077857
    • Filing Date
      2017
    • Related Report
      2017 Annual Research Report
  • [Funded Workshop] 第19回日本蛋白質科学会年会 第71回日本細胞生物学会大会、神戸国際会議場2019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] 第25回DNA複製・組換え・修復ワークショップ2019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] 第13回日本エピジェネティクス研究会年会2019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] Gordon Research Conferences ”Genome Architecture in Cell Fate and Disease”2019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] EMBO Workshop on Organization of bacterial and eukaryotic genomes by SMC complexes2019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] Chromosome dynamics 20192019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] 第4回定量生命科学研究所シンポジウム2019

    • Related Report
      2019 Annual Research Report
  • [Funded Workshop] 染色体ワークショップ2019

    • Related Report
      2018 Annual Research Report
  • [Funded Workshop] 3R-3C国際シンポジウム2018

    • Related Report
      2018 Annual Research Report
  • [Funded Workshop] ストックホルム国際班会議2018

    • Related Report
      2018 Annual Research Report
  • [Funded Workshop] The 4th Meeting on GRANT-IN-AID FOR SCIENTIFIC RESEARCH ON INNOVATIVE AREAS “CHROMOSOME ORCHESTRATION SYSTEM (CHROMOSOME OS)”2017

    • Place of Presentation
      イギリス、ロンドン
    • Year and Date
      2017-02-20
    • Related Report
      2016 Annual Research Report
  • [Funded Workshop] the 2nd meeting on SMC proteins2017

    • Related Report
      2017 Annual Research Report
  • [Funded Workshop] The 10th 3R Symposium2016

    • Place of Presentation
      ホテル一畑、島根県松江市
    • Year and Date
      2016-11-13
    • Related Report
      2016 Annual Research Report
  • [Funded Workshop] International Symposium on “Chromosome Orchestration System”2016

    • Place of Presentation
      淡路夢舞台国際会議場(兵庫県淡路市)
    • Year and Date
      2016-03-01
    • Related Report
      2015 Annual Research Report

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Published: 2015-07-02   Modified: 2022-11-04  

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