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Intrinsic periodicity of cellular systems and its modulation as the driving force be

Administrative Group

Project AreaIntrinsic periodicity of cellular systems and its modulation as the driving force behind plant development
Project/Area Number 19H05670
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNara Institute of Science and Technology

Principal Investigator

NAKAJIMA Keiji  奈良先端科学技術大学院大学, 先端科学技術研究科, 教授 (80273853)

Co-Investigator(Kenkyū-buntansha) 上田 貴志  基礎生物学研究所, 細胞動態研究部門, 教授 (10311333)
植田 美那子  東北大学, 生命科学研究科, 教授 (20598726)
望月 敦史  京都大学, 医生物学研究所, 教授 (10304726)
近藤 洋平  名古屋大学, One Medicine 生命-創薬共創プラットフォーム, 特任講師 (00724444)
稲見 昌彦  東京大学, 先端科学技術研究センター, 教授 (00345117)
遠藤 求  奈良先端科学技術大学院大学, 先端科学技術研究科, 教授 (80551499)
深城 英弘  神戸大学, 理学研究科, 教授 (80324979)
河内 孝之  京都大学, 生命科学研究科, 教授 (40202056)
小田 祥久  名古屋大学, 理学研究科, 教授 (30583257)
塚谷 裕一  東京大学, 大学院理学系研究科(理学部), 教授 (90260512)
Project Period (FY) 2019-06-28 – 2024-03-31
Project Status Completed (Fiscal Year 2024)
Budget Amount *help
¥278,590,000 (Direct Cost: ¥214,300,000、Indirect Cost: ¥64,290,000)
Fiscal Year 2023: ¥32,630,000 (Direct Cost: ¥25,100,000、Indirect Cost: ¥7,530,000)
Fiscal Year 2022: ¥39,260,000 (Direct Cost: ¥30,200,000、Indirect Cost: ¥9,060,000)
Fiscal Year 2021: ¥32,630,000 (Direct Cost: ¥25,100,000、Indirect Cost: ¥7,530,000)
Fiscal Year 2020: ¥39,260,000 (Direct Cost: ¥30,200,000、Indirect Cost: ¥9,060,000)
Fiscal Year 2019: ¥134,810,000 (Direct Cost: ¥103,700,000、Indirect Cost: ¥31,110,000)
Keywords植物発生 / 周期性 / 細胞動態 / 数理解析 / 人間拡張工学 / 画像解析
Outline of Research at the Start

植物は一生を通じて器官や組織を作り続けながら成長する。このような特性に起因して、植物の形態には固有の周期性が現れる。植物の周期形態は遺伝的プログラムや環境変化といった、内的・外的因子により変化し、植物はこれを積極的に利用することで、器官のかたちや細胞の機能を変化させる。植物の形態や成長に現われるこのような「可塑的な周期性」は、植物個体の内部に潜在する未知の周期性とその変調に起因すると考えられるが、周期の実体やそれが形態へ現れる仕組みは不明である。本新学術領域では、植物科学者・情報科学者・理論生物学者が密接に連携して共同研究を展開し、周期と変調の視点から植物の発生原理を解明する。

Outline of Final Research Achievements

Plants grow by forming new tissues and organs, generating periodic, repeated structures. The number, size, and frequency of these repeating units can flexibly change in response to environmental conditions and genetic information, playing a crucial role in plant adaptation. Optimizing such periodic structures is a major goal in crop breeding, and understanding their genetic regulation is essential for improving plant productivity.This research area promoted interdisciplinary approaches integrating informatics and mathematical biology to elucidate the formation and modulation mechanisms of periodic plant morphology. Microscopic dynamic changes were captured using high-resolution live imaging and analyzed with AI-based methods. Mathematical modeling was employed to deepen our understanding of the principles underlying periodic pattern formation and modulation. The results highlighted the potential of interdisciplinary research to transform studies in plant developmental biology.

Academic Significance and Societal Importance of the Research Achievements

本研究は、植物の成長に伴って生じる周期的な形態(周期形態)と、その環境応答的な変調機構を解明することで、植物の発生原理に新たな視点を提供した。これは、植物の形態制御に関する基礎的理解を飛躍的に深めるとともに、作物育種やバイオマス生産などの応用にもつながる重要な知見である。さらに、情報学・数理生物学と連携した学際的手法により、高精細ライブイメージングの解析やモデリングを通じた新しい研究スタイルを確立し、生物学研究の変革にも寄与した。

Report

(6 results)
  • 2024 Final Research Report ( PDF )
  • 2023 Annual Research Report
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (211 results)

All 2024 2023 2022 2021 2020 2019 Other

All Int'l Joint Research (24 results) Journal Article (151 results) (of which Int'l Joint Research: 59 results,  Peer Reviewed: 149 results,  Open Access: 130 results) Presentation (21 results) (of which Int'l Joint Research: 9 results,  Invited: 4 results) Book (1 results) Remarks (10 results) Funded Workshop (4 results)

  • [Int'l Joint Research] Wageningen University(オランダ)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Ghent University/VIB Center for Plant Systems Biology(ベルギー)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] University of Edinburgh(英国)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] Max Planck Institute(ドイツ)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] National Taiwan University/Academia Sinica(その他の国・地域)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] University of Cambridge/University of Edinburgh(英国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] University of Helsinki(フィンランド)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Chinese University of Hong Kong/China Agricultural University(中国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Universite de Lyon(フランス)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Monash University(オーストラリア)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Gregor Mendel Institute(オーストリア)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Tennessee/North Carolina State University/New York University(米国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Instituto de Biologia Molecular y Celu/Institute of Evolutionary Biology/Universitat Jaume I(スペイン)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Ludwig-Maximilians-University/Technical University of Munich/Heinrich-Heine-University(ドイツ)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Cambridge(英国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] Max Planck Institute/Heinrich-Heine University/Universitat Potsdam(ドイツ)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] INRAE/Universite Paris-Saclay/Ecole Normale Superieure de Lyon(フランス)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] University of Warwick/University of Nottingham(英国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Ohio State University/University of Missouri/University of Washington(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Agriculture Victoria/The University of Western Australia/Monash University(オーストラリア)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2020 Annual Research Report
  • [Journal Article] The Effect of High C-D Gain on Human Dexterity: Toward Fingertip-sized Microscopy2024

    • Author(s)
      大伏 仙泰、脇坂 崇平、檜山 敦、稲見 昌彦
    • Journal Title

      Transactions of the Virtual Reality Society of Japan

      Volume: 29 Issue: 1 Pages: 67-77

    • DOI

      10.18974/tvrsj.29.1_67

    • ISSN
      1344-011X, 2423-9593
    • Year and Date
      2024-03-31
    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Petal abscission is promoted by jasmonic acid-induced autophagy at Arabidopsis petal bases2024

    • Author(s)
      Furuta Yuki、Yamamoto Haruka、Hirakawa Takeshi、Uemura Akira、Pelayo Margaret Anne、Iimura Hideaki、Katagiri Naoya、Takeda-Kamiya Noriko、Kumaishi Kie、Shirakawa Makoto、Ishiguro Sumie、Ichihashi Yasunori、Suzuki Takamasa、Goh Tatsuaki、Toyooka Kiminori、Ito Toshiro、Yamaguchi Nobutoshi
    • Journal Title

      Nature Communications

      Volume: 15 Issue: 1 Pages: 1098-1098

    • DOI

      10.1038/s41467-024-45371-3

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Functional characterization of calmodulin-like proteins, CML13 and CML14, as novel light chains of Arabidopsis class VIII myosins2024

    • Author(s)
      Symonds Kyle、Teresinski Howard J、Hau Bryan、Dwivedi Vikas、Belausov Eduard、Bar-Sinai Sefi、Tominaga Motoki、Haraguchi Takeshi、Sadot Einat、Ito Kohji、Snedden Wayne A
    • Journal Title

      Journal of Experimental Botany

      Volume: 75 Issue: 8 Pages: 2313-2329

    • DOI

      10.1093/jxb/erae031

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] First records of non-native species Callitriche deflexa (Plantaginaceae), which was previously misidentified as C. terrestris in Japan2024

    • Author(s)
      Koga Hiroyuki、Doll Yuki、Ohnishi Wataru、Tsukaya Hirokazu
    • Journal Title

      Biodiversity Data Journal

      Volume: 12

    • DOI

      10.3897/bdj.12.e115142

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Decoding the leaf apical meristem of Guarea glabra Vahl (Meliaceae): insight into the evolution of indeterminate pinnate leaves2024

    • Author(s)
      Moriyama Yasutake、Koga Hiroyuki、Tsukaya Hirokazu
    • Journal Title

      Scientific Reports

      Volume: 14 Issue: 1 Pages: 5166-5166

    • DOI

      10.1038/s41598-024-55882-0

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Integration of cell differentiation and initiation of monoterpenoid indole alkaloid metabolism in seed germination of <i>Catharanthus roseus</i>2024

    • Author(s)
      Uzaki Mai、Mori Tetsuya、Sato Mayuko、Wakazaki Mayumi、Takeda‐Kamiya Noriko、Yamamoto Kotaro、Murakami Akio、Guerrero Delia Ayled Serna、Shichijo Chizuko、Ohnishi Miwa、Ishizaki Kimitsune、Fukaki Hidehiro、O'Connor Sarah E.、Toyooka Kiminori、Mimura Tetsuro、Hirai Masami Yokota
    • Journal Title

      New Phytologist

      Volume: 242 Issue: 3 Pages: 1156-1171

    • DOI

      10.1111/nph.19662

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Low temperature-mediated repression and far-red light-mediated induction determine morning FLOWERING LOCUS T expression levels2024

    • Author(s)
      Hayeon Kim, Hye Won Kang, Dae Yeon Hwang, Nayoung Lee, Akane Kubota, Takato Imaizumi, Young Hun Song
    • Journal Title

      J. Integr. Plant Biol.

      Volume: 66 Issue: 1 Pages: 103-120

    • DOI

      10.1111/jipb.13595

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Microtubule-associated phase separation of MIDD1 tunes cell wall spacing in xylem vessels in Arabidopsis thaliana2024

    • Author(s)
      Higa Takeshi、Kijima Saku T.、Sasaki Takema、Takatani Shogo、Asano Ryosuke、Kondo Yohei、Wakazaki Mayumi、Sato Mayuko、Toyooka Kiminori、Demura Taku、Fukuda Hiroo、Oda Yoshihisa
    • Journal Title

      Nature Plants

      Volume: 10 Issue: 1 Pages: 100-117

    • DOI

      10.1038/s41477-023-01593-9

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The phosphorylated pathway of serine biosynthesis affects sperm, embryo, and sporophyte development, and metabolism in Marchantia polymorpha2024

    • Author(s)
      Wang M., Tabeta H., Ohtaka K., Kuwahara A., Nishihama R., Ishikawa T., Toyooka K., Sato M., Wakazaki M., Akashi H., Tsugawa H., Shoji T., Okazaki Y., Yoshida K., Sato R., Ferjani A., Kohchi T., Hirai M.Y.
    • Journal Title

      Commun. Biol.

      Volume: 7 Issue: 1 Pages: 102-102

    • DOI

      10.1038/s42003-023-05746-6

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RAF-like protein kinases mediate a deeply conserved, rapid auxin response2024

    • Author(s)
      Kuhn Andre、Roosjen Mark、Mutte Sumanth、Dubey Shiv Mani、Carrillo Carrasco Vanessa Polet、Boeren Sjef、Monzer Aline、Koehorst Jasper、Kohchi Takayuki、Nishihama Ryuichi、Fendrych Matyas、Sprakel Joris、Friml Jiri、Weijers Dolf
    • Journal Title

      Cell

      Volume: 187 Issue: 1 Pages: 130-148.e17

    • DOI

      10.1016/j.cell.2023.11.021

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Conserved CKI1-mediated signaling is required for female germline specification in Marchantia polymorpha2024

    • Author(s)
      Bao Haonan、Sun Rui、Iwano Megumi、Yoshitake Yoshihiro、Aki Shiori S.、Umeda Masaaki、Nishihama Ryuichi、Yamaoka Shohei、Kohchi Takayuki
    • Journal Title

      Current Biology

      Volume: 34 Issue: 6 Pages: 1324-1332

    • DOI

      10.1016/j.cub.2024.01.013

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Transcription of the Antisense Long Non-Coding RNA, SUPPRESSOR OF FEMINIZATION, Represses Expression of the Female-Promoting Gene FEMALE GAMETOPHYTE MYB in the Liverwort Marchantia polymorpha2024

    • Author(s)
      Kajiwara Tomoaki、Miyazaki Motoki、Yamaoka Shohei、Yoshitake Yoshihiro、Yasui Yukiko、Nishihama Ryuichi、Kohchi Takayuki
    • Journal Title

      Plant and Cell Physiology

      Volume: 65 Issue: 3 Pages: 338-349

    • DOI

      10.1093/pcp/pcad170

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Convergent evolution of water-conducting cells in Marchantia recruited the ZHOUPI gene promoting cell wall reinforcement and programmed cell death2024

    • Author(s)
      Lu Yen-Ting, Loue-Manifel Jeanne et al.
    • Journal Title

      Current Biology

      Volume: 34 Issue: 4 Pages: 793-807.e7

    • DOI

      10.1016/j.cub.2024.01.014

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Light-induced stomatal opening requires phosphorylation of the C-terminal autoinhibitory domain of plasma membrane H+-ATPase2024

    • Author(s)
      Fuji Saashia、Yamauchi Shota、Sugiyama Naoyuki、Kohchi Takayuki、Nishihama Ryuichi、Shimazaki Ken-ichiro、Takemiya Atsushi
    • Journal Title

      Nature Communications

      Volume: 15 Issue: 1 Pages: 1195-1195

    • DOI

      10.1038/s41467-024-45236-9

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dual Regulation of Cytochrome P450 Gene Expression by Two Distinct Small RNAs, a Novel tasiRNA and miRNA, in <i>Marchantia polymorpha</i>2024

    • Author(s)
      Hung Yu-Ling、Hong Syuan-Fei、Wei Wei-Lun、Cheng Shiuan、Yu Jia-Zhen、Tjita Veny、Yong Qian-Yuan、Nishihama Ryuichi、Kohchi Takayuki、Bowman John L、Chien Yuan-Chi、Chiu Yen-Hsin、Yang Ho-Chun、Lu Mei-Yeh Jade、Pan Zhao-Jun、Wang Chun-Neng、Lin Shih-Shun
    • Journal Title

      Plant And Cell Physiology

      Volume: n/a Issue: 7 Pages: 1115-1134

    • DOI

      10.1093/pcp/pcae029

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Periodic cytokinin responses in Lotus japonicus rhizobium infection and nodule development2024

    • Author(s)
      Soyano Takashi、Akamatsu Akira、Takeda Naoya、Watahiki Masaaki K.、Goh Tatsuaki、Okuma Nao、Suganuma Norio、Kojima Mikiko、Takebayashi Yumiko、Sakakibara Hitoshi、Nakajima Keiji、Kawaguchi Masayoshi
    • Journal Title

      Science

      Volume: 385 Issue: 6706 Pages: 288-294

    • DOI

      10.1126/science.adk5589

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Three-Dimensional Morphological Analysis Revealed the Cell Patterning Bases for?the Sexual Dimorphism Development in?the Liverwort <i>Marchantia polymorpha</i>2023

    • Author(s)
      Cui Yihui、Hisanaga Tetsuya、Kajiwara Tomoaki、Yamaoka Shohei、Kohchi Takayuki、Goh Tatsuaki、Nakajima Keiji
    • Journal Title

      Plant And Cell Physiology

      Volume: 64 Issue: 8 Pages: 866-879

    • DOI

      10.1093/pcp/pcad048

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] In-Depth Quantification of Cell Division and Elongation Dynamics at the Tip of Growing Arabidopsis Roots Using 4D Microscopy, AI-Assisted Image Processing and Data Sonification2023

    • Author(s)
      Goh Tatsuaki、Song Yu、Yonekura Takaaki、Obushi Noriyasu、Den Zeping、Imizu Katsutoshi、Tomizawa Yoko、Kondo Yohei、Miyashima Shunsuke、Iwamoto Yutaro、Inami Masahiko、Chen Yen-Wei、Nakajima Keiji
    • Journal Title

      Plant And Cell Physiology

      Volume: 64 Issue: 11 Pages: 1262-1278

    • DOI

      10.1093/pcp/pcad105

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic Interaction between Arabidopsis SUR2/CYP83B1 and GNOM Indicates the Importance of Stabilizing Local Auxin Accumulation in Lateral Root Initiation2023

    • Author(s)
      Chieko Goto, Akira Ikegami, Tatsuaki Goh, Kaisei Maruyama, Hiroyuki Kasahara, Yumiko Takebayashi, Yuji Kamiya, Koichi Toyokura, Yuki Kondo, Kimitsune Ishizaki, Tetsuro Mimura, Hidehiro Fukaki
    • Journal Title

      Plant and Cell Physiology

      Volume: 64 Issue: 10 Pages: 1178-1188

    • DOI

      10.1093/pcp/pcad084

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A mechanical theory of competition between plant root growth and soil pressure reveals a potential mechanism of root penetration2023

    • Author(s)
      Tomobe Haruka、Tsugawa Satoru、Yoshida Yuki、Arita Tetsuya、Tsai Allen Yi-Lun、Kubo Minoru、Demura Taku、Sawa Shinichiro
    • Journal Title

      Scientific Reports

      Volume: 13 Issue: 1 Pages: 7473-7473

    • DOI

      10.1038/s41598-023-34025-x

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Thickness-stiffness trade-off improves lodging resistance in rice2023

    • Author(s)
      Tsugawa Satoru、Shima Hiroyuki、Ishimoto Yukitaka、Ishikawa Kazuya
    • Journal Title

      Scientific Reports

      Volume: 13 Issue: 1 Pages: 10828-10828

    • DOI

      10.1038/s41598-023-37992-3

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Shoot gravitropism and organ straightening cooperate to arrive at a mechanically favorable shape in Arabidopsis2023

    • Author(s)
      Tsugawa Satoru、Miyake Yuzuki、Okamoto Keishi、Toyota Masatsugu、Yagi Hiroki、Terao Morita Miyo、Hara-Nishimura Ikuko、Demura Taku、Ueda Haruko
    • Journal Title

      Scientific Reports

      Volume: 13 Issue: 1 Pages: 11165-11165

    • DOI

      10.1038/s41598-023-38069-x

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gaining New Insights in Plant Biology through Human-Machine Collaboration2023

    • Author(s)
      Nakajima Keiji、Higaki Takumi、Ueda Takashi、Inami Masahiko
    • Journal Title

      Plant And Cell Physiology

      Volume: 64 Issue: 11 Pages: 1257-1261

    • DOI

      10.1093/pcp/pcad144

    • Related Report
      2023 Annual Research Report
    • Open Access
  • [Journal Article] Experimental validation of the mechanism of stomatal development diversification2023

    • Author(s)
      Doll Yuki、Koga Hiroyuki、Tsukaya Hirokazu
    • Journal Title

      Journal of Experimental Botany

      Volume: 74 Issue: 18 Pages: 5667-5681

    • DOI

      10.1093/jxb/erad279

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sucrose Signaling Contributes to the Maintenance of Vascular Cambium by Inhibiting Cell Differentiation2023

    • Author(s)
      Narutaki Aoi、Kahar Prihardi、Shimadzu Shunji、Maeda Shota、Furuya Tomoyuki、Ishizaki Kimitsune、Fukaki Hidehiro、Ogino Chiaki、Kondo Yuki
    • Journal Title

      Plant And Cell Physiology

      Volume: 64 Issue: 12 Pages: 1511-1522

    • DOI

      10.1093/pcp/pcad039

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] P-MIRU, a Polarized Multispectral Imaging System, Reveals Reflection Information on?the Biological Surface2023

    • Author(s)
      Balandra Alfonso、Doll Yuki、Hirose Shogo、Kajiwara Tomoaki、Kashino Zendai、Inami Masahiko、Koshimizu Shizuka、Fukaki Hidehiro、Watahiki Masaaki K
    • Journal Title

      Plant And Cell Physiology

      Volume: 64 Issue: 11 Pages: 1311-1322

    • DOI

      10.1093/pcp/pcad045

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Circadian Clock Controls Root Hair Elongation through Long-Distance Communication2023

    • Author(s)
      Ikeda Hikari、Uchikawa Taiga、Kondo Yohei、Takahashi Nozomu、Shishikui Takuma、Watahiki Masaaki K、Kubota Akane、Endo Motomu
    • Journal Title

      Plant And Cell Physiology

      Volume: 64 Issue: 11 Pages: 1289-1300

    • DOI

      10.1093/pcp/pcad076

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The FLOWERING LOCUS T gene expression is controlled by high-irradiance response and external coincidence mechanism in long days in Arabidopsis.2023

    • Author(s)
      Lee Nayoung、Ozaki Yusuke、Hempton Andrew K.、Takagi Hiroshi、Purusuwashi Savita、Song Young Hun、Endo Motomu、Kubota Akane、Imaizumi Takato
    • Journal Title

      New Phytologist

      Volume: - Issue: 1 Pages: 208-221

    • DOI

      10.1111/nph.18932

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Root PRR7 Improves the Accuracy of the Shoot Circadian Clock through Nutrient Transport2023

    • Author(s)
      Uemoto Kyohei、Mori Fumito、Yamauchi Shota、Kubota Akane、Takahashi Nozomu、Egashira Haruki、Kunimoto Yumi、Araki Takashi、Takemiya Atsushi、Ito Hiroshi、Endo Motomu
    • Journal Title

      Plant and Cell Physiology

      Volume: 64 Issue: 3 Pages: 352-362

    • DOI

      10.1093/pcp/pcad003

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] LysM-mediated signaling in Marchantia polymorpha highlights the conservation of pattern-triggered immunity in land plants2023

    • Author(s)
      Yotsui Izumi ..., Takashi Ueda (22人中20番目)...
    • Journal Title

      Current Biology

      Volume: 33 Issue: 17 Pages: 3732-3746.e8

    • DOI

      10.1016/j.cub.2023.07.068

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The SYP123-VAMP727 SNARE complex delivers secondary cell wall components for root hair shank hardening in Arabidopsis2023

    • Author(s)
      Hirano Tomoko、Ebine Kazuo、Ueda Takashi、Higaki Takumi、Watanabe-Nakayama Takahiro、Konno Hiroki、Takigawa-Imamura Hisako、Sato Masa H
    • Journal Title

      The Plant Cell

      Volume: 35 Issue: 12 Pages: 4347-4365

    • DOI

      10.1093/plcell/koad240

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Harnessing Deep Learning to Analyze Cryptic Morphological Variability of Marchantia polymorpha2023

    • Author(s)
      Tomizawa Yoko、Minamino Naoki、Shimokawa Eita、Kawamura Shogo、Komatsu Aino、Hiwatashi Takuma、Nishihama Ryuichi、Ueda Takashi、Kohchi Takayuki、Kondo Yohei
    • Journal Title

      Plant and Cell Physiology

      Volume: 64 Issue: 11 Pages: 1343-1355

    • DOI

      10.1093/pcp/pcad117

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis of Plant-Specific ANTH Domain Containing Protein in Marchantia polymorpha2023

    • Author(s)
      Minamino Naoki、Fujii Haruki、Murata Haruhiko、Hachinoda Sho、Kondo Yohei、Hotta Kazuhiro、Ueda Takashi
    • Journal Title

      Plant And Cell Physiology

      Volume: 64 Issue: 11 Pages: 1331-1342

    • DOI

      10.1093/pcp/pcad118

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comprehensive and quantitative analysis of intracellular structure polarization at the apical basal axis in elongating Arabidopsis zygotes2023

    • Author(s)
      Hiromoto Yukiko、Minamino Naoki、Kikuchi Suzuka、Kimata Yusuke、Matsumoto Hikari、Nakagawa Sakumi、Ueda Minako、Higaki Takumi
    • Journal Title

      Scientific Reports

      Volume: 13 Pages: 22879-22879

    • DOI

      10.1101/2023.08.22.554231

    • Related Report
      2023 Annual Research Report
    • Open Access
  • [Journal Article] Confined-microtubule assembly shapes three-dimensional cell wall structures in xylem vessels2023

    • Author(s)
      Sasaki Takema、Saito Kei、Inoue Daisuke、Serk Henrik、Sugiyama Yuki、Pesquet Edouard、Shimamoto Yuta、Oda Yoshihisa
    • Journal Title

      Nature Communications

      Volume: 14 Issue: 1 Pages: 6987-6987

    • DOI

      10.1038/s41467-023-42487-w

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Controlling complex dynamical systems based on the structure of the networks2023

    • Author(s)
      Mochizuki A.
    • Journal Title

      Biophysics and Physicobiology

      Volume: 20 Issue: 2 Pages: n/a

    • DOI

      10.2142/biophysico.bppb-v20.0019

    • ISSN
      2189-4779
    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] RENGE infers gene regulatory networks using time-series single-cell RNA-seq data with CRISPR perturbations2023

    • Author(s)
      Ishikawa Masato、Sugino Seiichi、Masuda Yoshie、Tarumoto Yusuke、Seto Yusuke、Taniyama Nobuko、Wagai Fumi、Yamauchi Yuhei、Kojima Yasuhiro、Kiryu Hisanori、Yusa Kosuke、Eiraku Mototsugu、Mochizuki Atsushi
    • Journal Title

      Communications Biology

      Volume: 6 Issue: 1 Pages: 1290-1290

    • DOI

      10.1038/s42003-023-05594-4

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Patterns of change in regulatory modules of chemical reaction systems induced by network modification2023

    • Author(s)
      Hishida Atsuki、Okada Takashi、Mochizuki Atsushi
    • Journal Title

      PNAS Nexus

      Volume: 3 Issue: 1

    • DOI

      10.1093/pnasnexus/pgad441

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biosynthesis of gibberellin-related compounds modulates far-red light responses in the liverwort Marchantia polymorpha2023

    • Author(s)
      Sun Rui、Okabe Maiko、Miyazaki Sho、Ishida Toshiaki、Mashiguchi Kiyoshi、Inoue Keisuke、Yoshitake Yoshihiro、Yamaoka Shohei、Nishihama Ryuichi、Kawaide Hiroshi、Nakajima Masatoshi、Yamaguchi Shinjiro、Kohchi Takayuki
    • Journal Title

      The Plant Cell

      Volume: 35 Issue: 11 Pages: 4111-4132

    • DOI

      10.1093/plcell/koad216

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A bHLH heterodimer regulates germ cell differentiation in land plant gametophytes2023

    • Author(s)
      Saito Misaki、Momiki Ryosuke、Ebine Kazuo、Yoshitake Yoshihiro、Nishihama Ryuichi、Miyakawa Takuya、Nakano Takeshi、Mitsuda Nobutaka、Araki Takashi、Kohchi Takayuki、Yamaoka Shohei
    • Journal Title

      Current Biology

      Volume: 33 Issue: 22 Pages: 4980-4987.e6

    • DOI

      10.1016/j.cub.2023.09.020

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Patterned proliferation orients tissue-wide stress to control root vascular symmetry in Arabidopsis2023

    • Author(s)
      Fujiwara M, Imamura M, Matsushita K, Roszak P, Yamashino T, Hosokawa Y, Nakajima K, Fujimoto K, Miyashima S.
    • Journal Title

      Curr Biol.

      Volume: 33 Issue: 5 Pages: 886-893

    • DOI

      10.1016/j.cub.2023.01.036

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Behavior of Male Gamete Fusogen GCS1/HAP2 and the Regulation in Arabidopsis Double Fertilization2023

    • Author(s)
      Shiba Yuka、Takahashi Taro、Ohashi Yukino、Ueda Minako、Mimuro Amane、Sugimoto Jin、Noguchi Yuka、Igawa Tomoko
    • Journal Title

      Biomolecules

      Volume: 13 Issue: 2 Pages: 208-208

    • DOI

      10.3390/biom13020208

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Contribution of vasculature to stem integrity in Arabidopsis thaliana2023

    • Author(s)
      Asaoka Mariko、Sakamoto Shingo、Gunji Shizuka、Mitsuda Nobutaka、Tsukaya Hirokazu、Sawa Shinichiro、Hamant Olivier、Ferjani Ali
    • Journal Title

      Development

      Volume: 150 Issue: 3 Pages: 150-150

    • DOI

      10.1242/dev.201156

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Autophagy regulates plastid reorganization during spermatogenesis in the liverwort Marchantia polymorpha2023

    • Author(s)
      Norizuki Takuya、Minamino Naoki、Sato Miyuki、Ueda Takashi
    • Journal Title

      Frontiers in Plant Science

      Volume: 14 Pages: 1-8

    • DOI

      10.3389/fpls.2023.1101983

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel inhibitors of microtubule organization and phragmoplast formation in diverse plant species2023

    • Author(s)
      Kimata Yusuke、Yamada Moe、Murata Takashi、Kuwata Keiko、Sato Ayato、Suzuki Takamasa、Kurihara Daisuke、Hasebe Mitsuyasu、Higashiyama Tetsuya、Ueda Minako
    • Journal Title

      Life Science Alliance

      Volume: 6 Issue: 5 Pages: e202201657-e202201657

    • DOI

      10.26508/lsa.202201657

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha2023

    • Author(s)
      Moriya Kenta C.、Shirakawa Makoto、Loue-Manifel Jeanne、Matsuda Yoriko、Lu Yen-Ting、Tamura Kentaro、Oka Yoshito、Matsushita Tomonao、Hara-Nishimura Ikuko、Ingram Gwyneth、Nishihama Ryuichi、Goodrich Justin、Kohchi Takayuki、Shimada Tomoo
    • Journal Title

      Nature Plants

      Volume: 9 Issue: 2 Pages: 302-314

    • DOI

      10.1038/s41477-022-01325-5

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ab-GALFA, A bioassay for insect gall formation using the model plant Arabidopsis thaliana2023

    • Author(s)
      Tomoko Hirano , Ayaka Okamoto , Yoshihisa Oda , Tomoaki Sakamoto , Seiji Takeda , Takakazu Matsuura , Yoko Ikeda , Takumi Higaki , Seisuke Kimura , Masa H Sato
    • Journal Title

      Scientific Reports

      Volume: 13 Issue: 1 Pages: 2554-2554

    • DOI

      10.1038/s41598-023-29302-8

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] CRISPR/Cas9-mediated disruption of <i>ALLENE OXIDE SYNTHASE</i> results in defective 12-oxo-phytodienoic acid accumulation and reduced defense against spider mite (<i>Tetranychus urticae</i>) in liverwort (<i>Marchantia polymorpha</i>)2022

    • Author(s)
      Koeduka, T., Takaishi, M., Suzuki, M., Nishihama, R., Kohchi, T., Uefune, M., and Matsui, K.
    • Journal Title

      Plant Biotechnology

      Volume: 39 Issue: 2 Pages: 191-194

    • DOI

      10.5511/plantbiotechnology.22.0328a

    • ISSN
      1342-4580, 1347-6114
    • Year and Date
      2022-06-25
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Migration of prospindle before the first asymmetric division in germinating spore of <i>Marchantia polymorpha</i>2022

    • Author(s)
      Sakai Yuuki、Higaki Takumi、Ishizaki Kimitsune、Nishihama Ryuichi、Kohchi Takayuki、Hasezawa Seiichiro
    • Journal Title

      Plant Biotechnology

      Volume: 39 Issue: 1 Pages: 5-12

    • DOI

      10.5511/plantbiotechnology.21.1217b

    • ISSN
      1342-4580, 1347-6114
    • Year and Date
      2022-03-25
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A glycogen synthase kinase 3-like kinase MpGSK regulates cell differentiation in <i>Marchantia polymorpha</i>2022

    • Author(s)
      Furuya Tomoyuki、Nishihama Ryuichi、Ishizaki Kimitsune、Kohchi Takayuki、Fukuda Hiroo、Kondo Yuki
    • Journal Title

      Plant Biotechnology

      Volume: 39 Issue: 1 Pages: 65-72

    • DOI

      10.5511/plantbiotechnology.21.1219a

    • NAID

      130008161270

    • ISSN
      1342-4580, 1347-6114
    • Year and Date
      2022-03-25
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A guiding role of the Arabidopsis circadian clock in cell differentiation revealed by time-series single-cell RNA sequencing2022

    • Author(s)
      Torii Kotaro、Inoue Keisuke、Bekki Keita、Haraguchi Kazuya、Kubo Minoru、Kondo Yuki、Suzuki Takamasa、Kubota Akane、Uemoto Kyohei、Shimizu Hanako、Saito Masato、Fukuda Hiroo、Araki Takashi、Endo Motomu
    • Journal Title

      Cell Reports

      Volume: 40 Issue: 2 Pages: 111059-111059

    • DOI

      10.1016/j.celrep.2022.111059

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Oscillating flower colour changes of <i>Causonis japonica</i> (Thunb.) Raf. (Vitaceae) linked to sexual phase changes2022

    • Author(s)
      Furukawa Y.、Tsukaya H.、Kawakubo N.
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 19682-19682

    • DOI

      10.1038/s41598-022-24252-z

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A structural approach to understanding enzymatic regulation of chemical reaction networks2022

    • Author(s)
      Mochizuki Atsushi
    • Journal Title

      Biochemical Journal

      Volume: 479 Issue: 11 Pages: 1265-1283

    • DOI

      10.1042/bcj20210545

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative live-cell imaging of GPCR downstream signaling dynamics2022

    • Author(s)
      Tany Ryosuke、Goto Yuhei、Kondo Yohei、Aoki Kazuhiro
    • Journal Title

      Biochemical Journal

      Volume: 479 Issue: 8 Pages: 883-900

    • DOI

      10.1042/bcj20220021

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Aerial (+)-borneol modulates root morphology, auxin signalling and meristematic activity in Arabidopsis roots2022

    • Author(s)
      Fukuda Kyohei、Uefune Masayoshi、Fukaki Hidehiro、Yamauchi Yasuo、Hara-Nishimura Ikuko、Ozawa Rika、Matsui Kenji、Sugimoto Koichi、Okada Kazunori、Imai Ryozo、Takahashi Kenshi、Enami Shinichi、Wurst Rene、Takabayashi Junji
    • Journal Title

      Biology Letters

      Volume: 18 Issue: 5 Pages: 20210629-20210629

    • DOI

      10.1098/rsbl.2021.0629

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamic rearrangement and autophagic degradation of mitochondria during spermiogenesis in the liverwort Marchantia polymorpha2022

    • Author(s)
      Norizuki Takuya、Minamino Naoki、Sato Miyuki、Tsukaya Hirokazu、Ueda Takashi
    • Journal Title

      Cell Reports

      Volume: 39 Issue: 11 Pages: 110975-110975

    • DOI

      10.1016/j.celrep.2022.110975

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microtubules promote the non-cell autonomous action of microRNAs by inhibiting their cytoplasmic loading onto ARGONAUTE1 in Arabidopsis2022

    • Author(s)
      Fan Lusheng、Zhang Cui、Gao Bin、Zhang Yong、Stewart Ethan、Jez Jakub、Nakajima Keiji、Chen Xuemei
    • Journal Title

      Developmental Cell

      Volume: 57 Issue: 8 Pages: 995-1008.e5

    • DOI

      10.1016/j.devcel.2022.03.015

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Position of meristems and the angles of the cell division plane regulate the uniqueness of lateral organ shape2022

    • Author(s)
      Kinoshita Ayaka、Naito Makiko、Wang Zining、Inoue Yasuhiro、Mochizuki Atsushi、Tsukaya Hirokazu
    • Journal Title

      Development

      Volume: 149 Issue: 23

    • DOI

      10.1242/dev.199773

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Autophagy promotes organelle clearance and organized cell separation of living root cap cells in <i>Arabidopsis thaliana</i>2022

    • Author(s)
      Goh Tatsuaki、Sakamoto Kaoru、Wang Pengfei、Kozono Saki、Ueno Koki、Miyashima Shunsuke、Toyokura Koichi、Fukaki Hidehiro、Kang Byung-Ho、Nakajima Keiji
    • Journal Title

      Development

      Volume: 149 Issue: 11

    • DOI

      10.1242/dev.200593

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Remodeling of organelles and microtubules during spermiogenesis in the liverwort Marchantia polymorpha2022

    • Author(s)
      Minamino Naoki、Norizuki Takuya、Mano Shoji、Ebine Kazuo、Ueda Takashi
    • Journal Title

      Development

      Volume: 149 Issue: 15 Pages: 1-14

    • DOI

      10.1242/dev.200951

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microtubule-associated ROP interactors affect microtubule dynamics and modulate cell wall patterning and root hair growth2022

    • Author(s)
      Feiguelman Gil、Cui Xiankui、Sternberg Hasana、Hur Eliran Ben、Higa Takeshi、Oda Yoshihisa、Fu Ying、Yalovsky Shaul
    • Journal Title

      Development

      Volume: 149 Issue: 22

    • DOI

      10.1242/dev.200811

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Normal oil body formation in Marchantia polymorpha requires functional coat protein complex I proteins2022

    • Author(s)
      Kanazawa T, Nishihama R, Ueda T
    • Journal Title

      Frontiers in Plant Science

      Volume: 13 Pages: 979066-979066

    • DOI

      10.3389/fpls.2022.979066

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tissue-targeted inorganic pyrophosphate hydrolysis in a fugu5 mutant reveals that excess inorganic pyrophosphate triggers developmental defects in a cell-autonomous manner2022

    • Author(s)
      Gunji Shizuka、Kawade Kensuke、Tabeta Hiromitsu、Horiguchi Gorou、Oikawa Akira、Asaoka Mariko、Hirai Masami Yokota、Tsukaya Hirokazu、Ferjani Ali
    • Journal Title

      Frontiers in Plant Science

      Volume: 13 Pages: 945225-945225

    • DOI

      10.3389/fpls.2022.945225

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Auxin and cytokinin control fate determination of cotyledons in the one-leaf plant <i>Monophyllaea glabra</i>2022

    • Author(s)
      Kinoshita Ayaka、Tsukaya Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 13 Pages: 980138-980138

    • DOI

      10.3389/fpls.2022.980138

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Phylogenetic distribution and expression pattern analyses identified a divergent basal body assembly protein involved in land plant spermatogenesis2022

    • Author(s)
      Koshimizu Shizuka、Minamino Naoki、Nishiyama Tomoaki、Yoro Emiko、Sato Mayuko、Wakazaki Mayumi、Toyooka Kiminori、Ebine Kazuo、Sakakibara Keiko、Ueda Takashi、Yano Kentaro
    • Journal Title

      New Phytologist

      Volume: 236 Issue: 3 Pages: 1182-1196

    • DOI

      10.1111/nph.18385

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protein Kinase MpYAK1 Is Involved in Meristematic Cell Proliferation, Reproductive Phase Change and Nutrient Signaling in the Liverwort Marchantia polymorpha2022

    • Author(s)
      Haruka Shinkawa; Masataka Kajikawa; Tomoyuki Furuya; Ryuichi Nishihama; Hirokazu Tsukaya; Takayuki Kohchi; Hideya Fukuzawa
    • Journal Title

      Plant and Cell Physiology

      Volume: 63 Issue: 8 Pages: 1063-1077

    • DOI

      10.1093/pcp/pcac076

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Auxin signaling is essential for organogenesis but not for cell survival in the liverwort<i>Marchantia polymorpha</i>2022

    • Author(s)
      Suzuki Hidemasa、Kato Hirotaka、Iwano Megumi、Nishihama Ryuichi、Kohchi Takayuki
    • Journal Title

      The Plant Cell

      Volume: 35 Issue: 3 Pages: 1058-1075

    • DOI

      10.1093/plcell/koac367

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Visualization of phosphorus re-translocation and phosphate transporter expression profiles in a shortened annual cycle system of poplar.2022

    • Author(s)
      Yuko Kurita;Satomi Kanno;Ryohei Sugita;Atsushi Hirose;Miwa Ohnishi;Ayumi Tezuka;Ayumi Deguchi;Kimitsune Ishizaki;Hidehiro Fukaki;Kei'ichi Baba;Atsushi J Nagano;Keitaro Tanoi;Tomoko M Nakanishi;Tetsuro Mimura
    • Journal Title

      Plant, cell & environment

      Volume: 45 Issue: 6 Pages: 1-16

    • DOI

      10.1111/pce.14319

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sulfanilamide Regulates Flowering Time through Expression of the Circadian Clock Gene LUX2022

    • Author(s)
      Hirohata Atsuhiro、Yamatsuta Yuta、Ogawa Kaori、Kubota Akane、Suzuki Takamasa、Shimizu Hanako、Kanesaka Yuki、Takahashi Nozomu、Endo Motomu
    • Journal Title

      Plant and Cell Physiology

      Volume: - Issue: 5 Pages: 649-657

    • DOI

      10.1093/pcp/pcac027

    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] MarpolBase Expression: A Web-Based, Comprehensive Platform for Visualization and Analysis of Transcriptomes in the Liverwort <i>Marchantia polymorpha</i>2022

    • Author(s)
      Kawamura Shogo、Romani Facundo、Yagura Masaru、Mochizuki Takako、Sakamoto Mika、Yamaoka Shohei、Nishihama Ryuichi、Nakamura Yasukazu、Yamato Katsuyuki T、Bowman John L、Kohchi Takayuki、Tanizawa Yasuhiro
    • Journal Title

      Plant and Cell Physiology

      Volume: 63 Issue: 11 Pages: 1745-1755

    • DOI

      10.1093/pcp/pcac129

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Distinct Functions of the Atypical Terminal Hydrophilic Domain of the HKT Transporter in the Liverwort Marchantia polymorpha.2022

    • Author(s)
      Imran S, Oyama M, Horie R, Kobayashi NI, Costa A, Kumano R, Hirata C, Tran STH, Katsuhara M, Tanoi K, Kohchi K, Ishizaki K, Horie T.
    • Journal Title

      Plant Cell Physiology

      Volume: 63 Issue: 6 Pages: 802816-802816

    • DOI

      10.1093/pcp/pcac044

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] R2R3-MYB transcription factor GEMMA CUP-ASSOCIATED MYB1 mediates the cytokinin signal to achieve proper organ development in Marchantia polymorpha2022

    • Author(s)
      Aki Shiori S.、Morimoto Tomoyo、Ohnishi Taiki、Oda Ayumi、Kato Hirotaka、Ishizaki Kimitsune、Nishihama Ryuichi、Kohchi Takayuki、Umeda Masaaki
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 21123-21123

    • DOI

      10.1038/s41598-022-25684-3

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improved clearing method contributes to deep imaging of plant organs2022

    • Author(s)
      Sakamoto Yuki、Ishimoto Anna、Sakai Yuuki、Sato Moeko、Nishihama Ryuichi、Abe Konami、Sano Yoshitake、Furuichi Teiichi、Tsuji Hiroyuki、Kohchi Takayuki、Matsunaga Sachihiro
    • Journal Title

      Communications Biology

      Volume: 5 Issue: 1 Pages: 12-12

    • DOI

      10.1038/s42003-021-02955-9

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diminished Auxin Signaling Triggers Cellular Reprogramming by Inducing a Regeneration Factor in the Liverwort <i>Marchantia polymorpha</i>2022

    • Author(s)
      Ishida Sakiko、Suzuki Hidemasa、Iwaki Aya、Kawamura Shogo、Yamaoka Shohei、Kojima Mikiko、Takebayashi Yumiko、Yamaguchi Katsushi、Shigenobu Shuji、Sakakibara Hitoshi、Kohchi Takayuki、Nishihama Ryuichi
    • Journal Title

      Plant and Cell Physiology

      Volume: 63 Issue: 3 Pages: 384-400

    • DOI

      10.1093/pcp/pcac004

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Two phylogenetically unrelated peptide‐receptor modules jointly regulate lateral root initiation via a partially shared signaling pathway in Arabidopsis thaliana2022

    • Author(s)
      Jourquin Joris、Fernandez Ana Ibis、Parizot Boris、Xu Ke、Grunewald Wim、Mamiya Akihito、Fukaki Hidehiro、Beeckman Tom
    • Journal Title

      New Phytologist

      Volume: 233 Issue: 4 Pages: 1780-1796

    • DOI

      10.1111/nph.17919

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Color-Changing Fluorescent Barcode Based on Strand Displacement Reaction Enables Simple Multiplexed Labeling2022

    • Author(s)
      Makino Koki、Susaki Etsuo A.、Endo Motomu、Asanuma Hiroyuki、Kashida Hiromu
    • Journal Title

      Journal of the American Chemical Society

      Volume: 144 Issue: 4 Pages: 1572-1579

    • DOI

      10.1021/jacs.1c09844

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 3-Phenyllactic acid, a root-promoting substance isolated from Bokashi fertilizer, exhibits synergistic effects with tryptophan2021

    • Author(s)
      Maki Yuko、Soejima Hiroshi、Kitamura Toru、Sugiyama Tamizi、Sato Takeo、Watahiki Masaaki K.、Yamaguchi Junji
    • Journal Title

      Plant Biotechnology

      Volume: 38 Issue: 1 Pages: 9-16

    • DOI

      10.5511/plantbiotechnology.20.0727a

    • NAID

      130008002853

    • ISSN
      1342-4580, 1347-6114
    • Year and Date
      2021-03-25
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of genes involved in <i>Meloidogyne incognita</i>-induced gall formation processes in <i>Arabidopsis thaliana</i>2021

    • Author(s)
      Suzuki Reira、Ueda Takashi、Wada Takuji、Ito Masaki、Ishida Takashi、Sawa Shinichiro
    • Journal Title

      Plant Biotechnology

      Volume: 38 Issue: 1 Pages: 1-8

    • DOI

      10.5511/plantbiotechnology.20.0716a

    • NAID

      130008002844

    • ISSN
      1342-4580, 1347-6114
    • Year and Date
      2021-03-25
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Deep evolutionary origin of gamete-directed zygote activation by KNOX/BELL transcription factors in green plants2021

    • Author(s)
      Hisanaga Tetsuya、Fujimoto Shota、Cui Yihui、Sato Katsutoshi、Sano Ryosuke、Yamaoka Shohei、Kohchi Takayuki、Berger Fr?d?ric、Nakajima Keiji
    • Journal Title

      eLife

      Volume: 10

    • DOI

      10.7554/elife.57090

    • NAID

      120007153088

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Fungal-Type Terpene Synthases in Marchantia polymorpha Are Involved in Sesquiterpene Biosynthesis in Oil Body Cells2021

    • Author(s)
      Takizawa Ryosuke、Hatada Miki、Moriwaki Yuta、Abe Sachika、Yamashita Yuko、Arimitsu Ryoma、Yamato Katsuyuki T、Nishihama Ryuichi、Kohchi Takayuki、Koeduka Takao、Chen Feng、Matsui Kenji
    • Journal Title

      Plant and Cell Physiology

      Volume: - Issue: 3 Pages: 528-537

    • DOI

      10.1093/pcp/pcaa175

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Major components of the KARRIKIN INSENSITIVE2-dependent signaling pathway are conserved in the liverwort Marchantia polymorpha2021

    • Author(s)
      Mizuno Y, Komatsu A, Shimazaki S, Naramoto S, Inoue K, Xie X, Ishizaki K, Kohchi T, Kyozuka J.
    • Journal Title

      Plant Cell

      Volume: - Issue: 7 Pages: 112-156

    • DOI

      10.1093/plcell/koab106

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Coordination between growth and stress responses by DELLA in the liverwort Marchantia polymorpha2021

    • Author(s)
      Hernandez-Garcia Jorge、Sun Rui、Serrano-Mislata Antonio、Inoue Keisuke、Vargas-Chavez Carlos、Esteve-Bruna David、Arbona Vicent、Yamaoka Shohei、Nishihama Ryuichi、Kohchi Takayuki、Blazquez Miguel A.
    • Journal Title

      Current Biology

      Volume: 31 Issue: 16 Pages: 3678-3686.e11

    • DOI

      10.1016/j.cub.2021.06.010

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A plant-specific DYRK kinase DYRKP coordinates cell morphology in Marchantia polymorpha.2021

    • Author(s)
      Furuya T; Shinkawa H; Kajikawa M; Nishihama R; Kohchi T; Fukuzawa H; Tsukaya H
    • Journal Title

      Journal of plant research

      Volume: 134 Issue: 6 Pages: 1265-1277

    • DOI

      10.1007/s10265-021-01345-w

    • NAID

      40022725207

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system2021

    • Author(s)
      Miyuki Iwasaki Katsuyuki T. Yamato John L. Bowman Takayuki Kohchi et al
    • Journal Title

      Current Biology

      Volume: 31 Issue: 24 Pages: 5522-5532.e7

    • DOI

      10.1016/j.cub.2021.10.023

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Na+/Ca2+ exchanger mediates cold Ca2+ signaling conserved for temperature-compensated circadian rhythms2021

    • Author(s)
      Kon Naohiro、Wang Hsin-tzu、Kato Yoshiaki S.、Uemoto Kyouhei、Kawamoto Naohiro、Kawasaki Koji、Enoki Ryosuke、Kurosawa Gen、Nakane Tatsuto、Sugiyama Yasunori、Tagashira Hideaki、Endo Motomu、Iwasaki Hideo、Iwamoto Takahiro、Kume Kazuhiko、Fukada Yoshitaka
    • Journal Title

      Science Advances

      Volume: 7 Issue: 18 Pages: 1-12

    • DOI

      10.1126/sciadv.abe8132

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamic Rearrangement and Directional Migration of Tubular Vacuoles are Required for the Asymmetric Division of the <i>Arabidopsis</i> Zygote2021

    • Author(s)
      Matsumoto Hikari、Kimata Yusuke、Higaki Takumi、Higashiyama Tetsuya、Ueda Minako
    • Journal Title

      Plant and Cell Physiology

      Volume: 62 Issue: 8 Pages: 1280-1289

    • DOI

      10.1093/pcp/pcab075

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization2021

    • Author(s)
      Roszak P, Heo J, Blob B, Toyokura K, Sugiyama Y, de Luis Balaguer MA, Lau W, Hamey F, Cirrone J, Madej E, Bouatta A, Wang X, Guichard M, Ursache R, Tavares H, Verstaen K, Wendrich J, Melnyk C, Oda Y, Shasha D, Ahnert S, Saeys Y, De Rybel B, Heidstra R, Scheres B, Grossmann G, Mahonen AP, Denninger P, Gttgens B et al.
    • Journal Title

      Science

      Volume: 374 Issue: 6575

    • DOI

      10.1126/science.aba5531

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A BLUS1 kinase signal and a decrease in intercellular CO2 concentration are necessary for stomatal opening in response to blue light2021

    • Author(s)
      Hosotani Sakurako、Yamauchi Shota、Kobayashi Haruki、Fuji Saashia、Koya Shigekazu、Shimazaki Ken-ichiro、Takemiya Atsushi
    • Journal Title

      The Plant Cell

      Volume: - Issue: 5 Pages: 1813-1827

    • DOI

      10.1093/plcell/koab067

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Pulse-chase EdU Method for Detection of Cell Division Orientation in Arabidopsis and Juncus prismatocarpus Leaf Primordia2021

    • Author(s)
      Yin Xiaofeng、Tsukaya Hirokazu
    • Journal Title

      BIO-PROTOCOL

      Volume: 11 Issue: 1

    • DOI

      10.21769/bioprotoc.3882

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Role for Auxin in Triggering Lamina Outgrowth of Unifacial Leaves2021

    • Author(s)
      Nukazuka Akira、Yamaguchi Takahiro、Tsukaya Hirokazu
    • Journal Title

      Plant Physiology

      Volume: - Issue: 2 Pages: 1013-1024

    • DOI

      10.1093/plphys/kiab087

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells2021

    • Author(s)
      Glanc M, Van Gelderen K, Hoermayer L, Tan S, Naramoto S, Zhang X, Domjan D, Vcelarova L, Hauschild R, Johnson A, de Koning E, van Dop M, Rademacher E, Janson S, Wei X, Molnar G, Fendrych M, De Rybel B, Offringa R, Friml J.
    • Journal Title

      Curr Biol

      Volume: - Issue: 9 Pages: 1918-1930.e5

    • DOI

      10.1016/j.cub.2021.02.028

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cargo sorting zones in the trans-Golgi network visualized by super-resolution confocal live imaging microscopy in plants2021

    • Author(s)
      Shimizu Yutaro、Takagi Junpei、Ito Emi、Ito Yoko、Ebine Kazuo、Komatsu Yamato、Goto Yumi、Sato Mayuko、Toyooka Kiminori、Ueda Takashi、Kurokawa Kazuo、Uemura Tomohiro、Nakano Akihiko
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 1901-1901

    • DOI

      10.1038/s41467-021-22267-0

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Desmethyl butenolides are optimal ligands for karrikin receptor proteins2021

    • Author(s)
      Yao Jiaren、Scaffidi Adrian、Meng Yongjie、Melville Kim T.、Komatsu Aino、Khosla Aashima、Nelson David C.、Kyozuka Junko、Flematti Gavin R.、Waters Mark T.
    • Journal Title

      New Phytologist

      Volume: 230 Issue: 3 Pages: 1003-1016

    • DOI

      10.1111/nph.17224

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dynamics of the cell fate specifications during female gametophyte development in Arabidopsis2021

    • Author(s)
      Susaki Daichi、Suzuki Takamasa、Maruyama Daisuke、Ueda Minako、Higashiyama Tetsuya、Kurihara Daisuke
    • Journal Title

      PLOS Biology

      Volume: 19 Issue: 3 Pages: 3001123-3001123

    • DOI

      10.1371/journal.pbio.3001123

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Endogenous gibberellins affect root nodule symbiosis via transcriptional regulation of NODULE INCEPTION in Lotus japonicus2021

    • Author(s)
      Akamatsu Akira、Nagae Miwa、Nishimura Yuka、Romero Montero Daniela、Ninomiya Satsuki、Kojima Mikiko、Takebayashi Yumiko、Sakakibara Hitoshi、Kawaguchi Masayoshi、Takeda Naoya
    • Journal Title

      The Plant Journal

      Volume: 105 Issue: 6 Pages: 1507-1520

    • DOI

      10.1111/tpj.15128

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide analysis of spatiotemporal expression patterns during rice leaf development.2021

    • Author(s)
      Miya M, Yoshikawa T, Sato Y, Itoh JI.
    • Journal Title

      BMC Genomics

      Volume: 22 Issue: 1 Pages: 169-169

    • DOI

      10.1186/s12864-021-07494-5

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hierarchical modeling of mechano-chemical dynamics of epithelial sheets across cells and tissue2021

    • Author(s)
      Asakura Yoshifumi、Kondo Yohei、Aoki Kazuhiro、Naoki Honda
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 4069-4069

    • DOI

      10.1038/s41598-021-83396-6

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of a Devernalization Inducer by Chemical Screening Approaches in Arabidopsis thaliana2021

    • Author(s)
      Shirakawa Makoto、Morisaki Yukaho、Gan Eng-Seng、Sato Ayato、Ito Toshiro
    • Journal Title

      Frontiers in Plant Science

      Volume: 12 Pages: 634068-634068

    • DOI

      10.3389/fpls.2021.634068

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] MYB3R-mediated active repression of cell cycle and growth under salt stress in Arabidopsis thaliana2021

    • Author(s)
      Okumura Toru、Nomoto Yuji、Kobayashi Kosuke、Suzuki Takamasa、Takatsuka Hirotomo、Ito Masaki
    • Journal Title

      Journal of Plant Research

      Volume: 134 Issue: 2 Pages: 261-277

    • DOI

      10.1007/s10265-020-01250-8

    • NAID

      40022515154

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ran-GTP Is Non-essential to Activate NuMA for Mitotic Spindle-Pole Focusing but Dynamically Polarizes HURP Near Chromosomes2021

    • Author(s)
      Tsuchiya Kenta、Hayashi Hisato、Nishina Momoko、Okumura Masako、Sato Yoshikatsu、Kanemaki Masato T.、Goshima Gohta、Kiyomitsu Tomomi
    • Journal Title

      Current Biology

      Volume: 31 Issue: 1 Pages: 115-127.e3

    • DOI

      10.1016/j.cub.2020.09.091

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Stem integrity in Arabidopsis thaliana requires a load-bearing epidermis2021

    • Author(s)
      Asaoka Mariko、Ooe Mao、Gunji Shizuka、Milani Pascale、Runel Gael、Horiguchi Gorou、Hamant Olivier、Sawa Shinichiro、Tsukaya Hirokazu、Ferjani Ali
    • Journal Title

      Development

      Volume: 148 Issue: 4 Pages: 198028-198028

    • DOI

      10.1242/dev.198028

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Temperature-dependent fasciation mutants provide a link between mitochondrial RNA processing and lateral root morphogenesis2021

    • Author(s)
      Otsuka Kurataka、Mamiya Akihito、Konishi Mineko、Nozaki Mamoru、Kinoshita Atsuko、Tamaki Hiroaki、Arita Masaki、Saito Masato、Yamamoto Kayoko、Hachiya Takushi、Noguchi Ko、Ueda Takashi、Yagi Yusuke、Kobayashi Takehito、Nakamura Takahiro、Sato Yasushi、Hirayama Takashi、Sugiyama Munetaka
    • Journal Title

      eLife

      Volume: 10

    • DOI

      10.7554/elife.61611

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The singularity response reveals entrainment properties of the plant circadian clock2021

    • Author(s)
      Masuda Kosaku、Tokuda Isao T.、Nakamichi Norihito、Fukuda Hirokazu
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 864-864

    • DOI

      10.1038/s41467-021-21167-7

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Time Lag Between Light and Heat Diurnal Cycles Modulates CIRCADIAN CLOCK ASSOCIATION 1 Rhythm and Growth in Arabidopsis thaliana2021

    • Author(s)
      Masuda Kosaku、Yamada Tatsuya、Kagawa Yuya、Fukuda Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 614360-614360

    • DOI

      10.3389/fpls.2020.614360

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tissue growth constrains root organ outlines into an isometrically scalable shape2021

    • Author(s)
      Fujiwara Motohiro、Goh Tatsuaki、Tsugawa Satoru、Nakajima Keiji、Fukaki Hidehiro、Fujimoto Koichi
    • Journal Title

      Development

      Volume: 148 Issue: 4 Pages: 196253-196253

    • DOI

      10.1242/dev.196253

    • NAID

      120007028967

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Trade-off between Plasticity and Velocity in Mycelial Growth2021

    • Author(s)
      Sayumi Fukuda, Riho Yamamoto, Naoki Yanagisawa, Naoki Takaya, Yoshikatsu Sato, Meritxell Riquelme, Norio Takeshita
    • Journal Title

      mBio

      Volume: 12 Issue: 2 Pages: 1-32

    • DOI

      10.1128/mbio.03196-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Two atypical ANGUSTIFOLIA without a plant‐specific C‐terminus regulate gametophore and sporophyte shapes in the moss Physcomitrium ( Physcomitrella ) patens2021

    • Author(s)
      Takechi Katsuaki、Nagase Hiroaki、Furuya Tomoyuki、Hattori Koro、Sato Yoshikatsu、Miyajima Kensuke、Higuchi Tomofumi、Matsuda Ryuya、Takio Susumu、Tsukaya Hirokazu、Takano Hiroyoshi
    • Journal Title

      The Plant Journal

      Volume: 105 Issue: 5 Pages: 1390-1399

    • DOI

      10.1111/tpj.15121

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Using linkage logic theory to control dynamics of a gene regulatory network of a chordate embryo2021

    • Author(s)
      Kobayashi Kenji、Maeda Kazuki、Tokuoka Miki、Mochizuki Atsushi、Satou Yutaka
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 4001-4001

    • DOI

      10.1038/s41598-021-83045-y

    • NAID

      120006997057

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Wound-inducible ANAC071 and ANAC096 transcription factors promote cambial cell formation in incised Arabidopsis flowering stems.2021

    • Author(s)
      Matsuoka K, Sato R, Matsukura Y, Kawajiri Y, Iino H, Nozawa N, Shibata K, Kondo Y, Satoh S, Asahina M.
    • Journal Title

      Communications Biology

      Volume: 4 Issue: 1 Pages: 369-369

    • DOI

      10.1038/s42003-021-01895-8

    • NAID

      120007033558

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ZEITLUPE enhances expression of PIF4 and YUC8 in the upper aerial parts of Arabidopsis seedlings to positively regulate hypocotyl elongation2021

    • Author(s)
      Saitoh Aya、Takase Tomoyuki、Abe Hiroshi、Watahiki Masaaki、Hirakawa Yuki、Kiyosue Tomohiro
    • Journal Title

      Plant Cell Reports

      Volume: 40 Issue: 3 Pages: 479-489

    • DOI

      10.1007/s00299-020-02643-8

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fused Thiophene-S,S-dioxide-Based Super-Photostable Fluorescent Marker for Lipid Droplets2020

    • Author(s)
      Taki Masayasu、Kajiwara Keiji、Yamaguchi Eriko、Sato Yoshikatsu、Yamaguchi Shigehiro
    • Journal Title

      ACS Materials Letters

      Volume: 3 Issue: 1 Pages: 42-49

    • DOI

      10.1021/acsmaterialslett.0c00451

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A new role for histone demethylases in the maintenance of plant genome integrity2020

    • Author(s)
      Antunez-Sanchez Javier、Naish Matthew、Ramirez-Prado Juan Sebastian、Ohno Sho、Huang Ying、Dawson Alexander、Opassathian Korawit、Manza-Mianza Deborah、Ariel Federico、Raynaud Cecile、Wibowo Anjar、Daron Josquin、Ueda Minako、Latrasse David、Slotkin R Keith、Weigel Detlef、Benhamed Moussa、Gutierrez-Marcos Jose
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.58533

    • NAID

      120007179207

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A peptide pair coordinates regular ovule initiation patterns with seed number and fruit size.2020

    • Author(s)
      Kawamoto N, Pino Del Carpio D, Hofmann A, Mizuta Y, Kurihara D, Higashiyama T, Uchida N, Torii KU, Colombo L, Groth G, Simon R
    • Journal Title

      Curr. Biol.

      Volume: 30 Issue: 22 Pages: 4352-4361

    • DOI

      10.1016/j.cub.2020.08.050

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A super-sensitive auxin-inducible degron system with an engineered auxin-TIR1 pair.2020

    • Author(s)
      Kohei Nishimura , Ryotaro Yamada , Shinya Hagihara , Rie Iwasaki , Naoyuki Uchida , Takumi Kamura , Koji Takahashi , Keiko U Torii , Tatsuo Fukagawa
    • Journal Title

      Nucleic acids research

      Volume: 48 Issue: 18 Pages: e108-e108

    • DOI

      10.1093/nar/gkaa748

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An Artificial Conversion of Roots into Organs with Shoot Stem Characteristics by Inducing Two Transcription Factors2020

    • Author(s)
      Hanano Shigeru、Tomatsu Hajime、Ohnishi Ai、Kobayashi Koichi、Kondo Yuki、Betsuyaku Shigeyuki、Takita Eiji、Ogata Yoshiyuki、Ozawa Keishi、Suda Kunihiro、Hosouchi Tsutomu、Nagase Takahiro、Suzuki Hideyuki、Sakurai Nozomu、Masumoto Hiroshi、Fukuda Hiroo、Shibata Daisuke
    • Journal Title

      iScience

      Volume: 23 Issue: 7 Pages: 101332-101332

    • DOI

      10.1016/j.isci.2020.101332

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] An energy landscape approach to understanding variety and robustness in tissue morphogenesis2020

    • Author(s)
      Hironori Takeda, Yoshitaka Kameo, Yasuhiro Inoue and Taiji Adachi
    • Journal Title

      Biomechanics and Modeling in Mechanobiology

      Volume: 19 Issue: 2 Pages: 471-479

    • DOI

      10.1007/s10237-019-01222-5

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] an3-Mediated Compensation Is Dependent on a Cell-Autonomous Mechanism in Leaf Epidermal Tissue2020

    • Author(s)
      Nozaki Mamoru、Kawade Kensuke、Horiguchi Gorou、Tsukaya Hirokazu
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Issue: 6 Pages: 1181-1190

    • DOI

      10.1093/pcp/pcaa048

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Arabidopsis GEX1 Is a Nuclear Membrane Protein of Gametes Required for Nuclear Fusion During Reproduction2020

    • Author(s)
      Nishikawa Shuh-ichi、Yamaguchi Yuki、Suzuki Chiharu、Yabe Ayaka、Sato Yuzuru、Kurihara Daisuke、Sato Yoshikatsu、Susaki Daichi、Higashiyama Tetsuya、Maruyama Daisuke
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 548032-548032

    • DOI

      10.3389/fpls.2020.548032

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ARP2/3-independent WAVE/SCAR pathway and class XI myosin control sperm nuclear migration in flowering plants2020

    • Author(s)
      Ali Mohammad Foteh、Fatema Umma、Peng Xiongbo、Hacker Samuel W.、Maruyama Daisuke、Sun Meng-Xiang、Kawashima Tomokazu
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Issue: 51 Pages: 32757-32763

    • DOI

      10.1073/pnas.2015550117

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cell-cell adhesion in plant grafting is facilitated by β-1,4-glucanases2020

    • Author(s)
      Notaguchi, M., Kurotani, K., Sato, Y., Tabata, R., Kawakatsu, Y., Okayasu, K., Sawai, Y., Okada, R., Asahina, M., Ichihashi, Y., Shirasu, K., Suzuki, T., Niwa, M., Higashiyama, T
    • Journal Title

      Science

      Volume: 369 Issue: 6504 Pages: 698-702

    • DOI

      10.1126/science.abc3710

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cellular requirements for PIN polar cargo clustering in Arabidopsis thaliana2020

    • Author(s)
      Li Hongjiang、Wangenheim Daniel、Zhang Xixi、Tan Shutang、Darwish‐Miranda Nasser、Naramoto Satoshi、Wabnik Krzysztof、De Rycke Riet、Kaufmann Walter A.、Gutl Daniel、Tejos Ricardo、Grones Peter、Ke Meiyu、Chen Xu、Dettmer Jan、Friml Jiri
    • Journal Title

      New Phytologist

      Volume: 229 Issue: 1 Pages: 351-369

    • DOI

      10.1111/nph.16887

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Design principles of a minimal auxin response system2020

    • Author(s)
      Kato Hirotaka、Mutte Sumanth K.、Suzuki Hidemasa、Crespo Isidro、Das Shubhajit、Radoeva Tatyana、Fontana Mattia、Yoshitake Yoshihiro、Hainiwa Emi、van den Berg Willy、Lindhoud Simon、Ishizaki Kimitsune、Hohlbein Johannes、Borst Jan Willem、Boer D. Roeland、Nishihama Ryuichi、Kohchi Takayuki、Weijers Dolf
    • Journal Title

      Nature Plants

      Volume: 6 Issue: 5 Pages: 473-482

    • DOI

      10.1038/s41477-020-0662-y

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Early Endosomal Trafficking Component BEN2/VPS45 Plays a Crucial Role in Internal Tissues in Regulating Root Growth and Meristem Size in Arabidopsis2020

    • Author(s)
      Matsuura Yuki、Fukasawa Narumi、Ogita Kosuke、Sasabe Michiko、Kakimoto Tatsuo、Tanaka Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 1027-1027

    • DOI

      10.3389/fpls.2020.01027

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Excess Pyrophosphate Restrains Pavement Cell Morphogenesis and Alters Organ Flatness in Arabidopsis thaliana2020

    • Author(s)
      Gunji Shizuka、Oda Yoshihisa、Takigawa-Imamura Hisako、Tsukaya Hirokazu、Ferjani Ali
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 31-31

    • DOI

      10.3389/fpls.2020.00031

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Expression Profiles of ANGUSTIFOLIA3 and SHOOT MERISTEMLESS, Key Genes for Meristematic Activity in a One-Leaf Plant Monophyllaea glabra, Revealed by Whole-Mount In Situ Hybridization2020

    • Author(s)
      Kinoshita Ayaka、Koga Hiroyuki、Tsukaya Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 1160-1160

    • DOI

      10.3389/fpls.2020.01160

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Improvement of Phycocyanobilin Synthesis for Genetically Encoded Phytochrome-Based Optogenetics2020

    • Author(s)
      Uda Youichi、Miura Haruko、Goto Yuhei、Yamamoto Kei、Mii Yusuke、Kondo Yohei、Takada Shinji、Aoki Kazuhiro
    • Journal Title

      ACS Chemical Biology

      Volume: 15 Issue: 11 Pages: 2896-2906

    • DOI

      10.1021/acschembio.0c00477

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Induction of Multichotomous Branching by CLAVATA Peptide in Marchantia polymorpha2020

    • Author(s)
      Hirakawa Yuki、Fujimoto Toko、Ishida Sakiko、Uchida Naoyuki、Sawa Shinichiro、Kiyosue Tomohiro、Ishizaki Kimitsune、Nishihama Ryuichi、Kohchi Takayuki、Bowman John L.
    • Journal Title

      Current Biology

      Volume: 30 Issue: 19 Pages: 3833-3840

    • DOI

      10.1016/j.cub.2020.07.016

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Longin R-SNARE is retrieved from the plasma membrane by ANTH domain-containing proteins in Arabidopsis2020

    • Author(s)
      Fujimoto Masaru、Ebine Kazuo、Nishimura Kohji、Tsutsumi Nobuhiro、Ueda Takashi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Issue: 40 Pages: 25150-25158

    • DOI

      10.1073/pnas.2011152117

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Maximum weighted matching with few edge crossings for 2-layered bipartite graph2020

    • Author(s)
      Haraguchi Kazuya、Torii Kotaro、Endo Motomu
    • Journal Title

      Discrete Applied Mathematics

      Volume: 287 Pages: 40-52

    • DOI

      10.1016/j.dam.2020.07.017

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mitochondrial dynamics and segregation during the asymmetric division of Arabidopsis zygotes2020

    • Author(s)
      Kimata Yusuke、Higaki Takumi、Kurihara Daisuke、Ando Naoe、Matsumoto Hikari、Higashiyama Tetsuya、Ueda Minako
    • Journal Title

      Quantitative Plant Biology

      Volume: 1

    • DOI

      10.1017/qpb.2020.4

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Morphological and Physiological Framework Underlying Plant Longevity in Arabidopsis thaliana2020

    • Author(s)
      Wang Yukun、Kumaishi Kie、Suzuki Takamasa、Ichihashi Yasunori、Yamaguchi Nobutoshi、Shirakawa Makoto、Ito Toshiro
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 600726-600726

    • DOI

      10.3389/fpls.2020.600726

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Morphology of gemmae, an overlooked taxonomic trait in the genus Marchantia L. (Marchantiaceae)2020

    • Author(s)
      Zheng Tian-Xiong、Inoue Yuya、Shimamura Masaki
    • Journal Title

      The Bryologist

      Volume: 123 Issue: 4 Pages: 601-610

    • DOI

      10.1639/0007-2745-123.4.601

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Post‐Assembly Photomasking of Potassium Acyltrifluoroborates (KATs) for Two‐Photon 3D Patterning of PEG‐Hydrogels2020

    • Author(s)
      Song Haewon、Wu Dino、Mazunin Dimitry、Liu Sizhou M.、Sato Yoshikatsu、Broguiere Nicolas、Zenobi‐Wong Marcy、Bode Jeffrey W.
    • Journal Title

      Helvetica Chimica Acta

      Volume: 103 Issue: 11 Pages: 11-11

    • DOI

      10.1002/hlca.202000172

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Kinase in the liverwort Marchantia polymorpha; A photosynthesis-dependent kinase for carbon metabolism2020

    • Author(s)
      Koide E, Suetsugu N, Iwano M, Gotoh E, Nomura Y, Stolze SC, Nakagami H, Kohchi T, Nishihama R
    • Journal Title

      Plant Cell & Physiology

      Volume: 61 Issue: 3 Pages: 631-643

    • DOI

      10.1093/pcp/pcz232

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Root system architecture analysis in Mesembryanthemum crystallinum (ice plant) seedlings reveals characteristic root halotropic response2020

    • Author(s)
      Otsuka Mayuko、Kato Hikaru、Yamada Shyota、Nakayama Tatsuhiko、Sakaoka Satomi、Morikami Atsushi、Tsukagoshi Hironaka
    • Journal Title

      Biology Open

      Volume: 10

    • DOI

      10.1242/bio.052142

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Root-knot nematodes induce gall formation by recruiting developmental pathways of post-embryonic organogenesis and regeneration to promote pluripotency2020

    • Author(s)
      Olmo, R., Cabrera, J., Diaz-Manzano, F., Ruiz-Ferrer, V., Barcala, M., Ishida, T., Garcia A., Andres, M., Lara, S.R., Verdugo, I., Ochoa, M., Fukaki, H., del Pozo, J. C., Moreno-Risueno, M., Kyndt, T., Gheysen L., Fenoll, C., Sawa, S., and Escobar, C.
    • Journal Title

      New Phytologist

      Volume: 227 Issue: 1 Pages: 210-215

    • DOI

      10.1111/nph.16521

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Subnuclear gene positioning through lamina association affects copper tolerance2020

    • Author(s)
      Sakamoto Yuki、Sato Mayuko、Sato Yoshikatsu、Harada Akihito、Suzuki Takamasa、Goto Chieko、Tamura Kentaro、Toyooka Kiminori、Kimura Hiroshi、Ohkawa Yasuyuki、Hara-Nishimura Ikuko、Takagi Shingo、Matsunaga Sachihiro
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 5914-5914

    • DOI

      10.1038/s41467-020-19621-z

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Suppression of class I compensated cell enlargement by xs2?mutation is mediated by salicylic acid signaling2020

    • Author(s)
      Fujikura Ushio、Ezaki Kazune、Horiguchi Gorou、Seo Mitsunori、Kanno Yuri、Kamiya Yuji、Lenhard Michael、Tsukaya Hirokazu
    • Journal Title

      PLOS Genetics

      Volume: 16 Issue: 6 Pages: e1008873-e1008873

    • DOI

      10.1371/journal.pgen.1008873

    • NAID

      120006873060

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Arabidopsis V-ATPase is localized to the TGN/EE via a seed plant-specific motif2020

    • Author(s)
      Lupanga U., Rohrich R., Askani J., Hilmer S., Kiefer C., Krebs M., Kanazawa T., Ueda T., Schumacher K.
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.60568

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The liverwort oil body is formed by redirection of the secretory pathway2020

    • Author(s)
      Kanazawa T., Morinaka H., Ebine K., Shimada T.L., Ishida S., Minamino N., Yamaguchi K., Shigenobu S., Kohchi T., Nakano A., Ueda T.
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 6152-6152

    • DOI

      10.1038/s41467-020-19978-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The nuclear envelope protein KAKU4 determines the migration order of the vegetative nucleus and sperm cells in pollen tubes2020

    • Author(s)
      Goto Chieko、Tamura Kentaro、Nishimaki Satsuki、Maruyama Daisuke、Hara-Nishimura Ikuko
    • Journal Title

      Journal of Experimental Botany

      Volume: 71 Issue: 20 Pages: 6273-6281

    • DOI

      10.1093/jxb/eraa367

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] GSK3 activity is a cell fate switch that balances the ratio of vascular cell type.2020

    • Author(s)
      Tamaki Tamaki, Oya Satoyo, Naito Makiko, Ozawa Yasuko, Furuya Tomoyuki, Saito Masato, Sato Mayuko, Wakazaki Mayumi, Toyooka Kiminori, Fukuda Hiroo, Helariutta Yka, Kondo Yuki
    • Journal Title

      Communications Biology

      Volume: 3 Issue: 1 Pages: 184-184

    • DOI

      10.1038/s42003-020-0907-3

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Time-Series Single-Cell RNA-Seq Data Reveal Auxin Fluctuation during Endocycle2020

    • Author(s)
      Kotaro Torii
    • Journal Title

      Plant cell & physiology

      Volume: 61 Issue: 2 Pages: 243254-243254

    • DOI

      10.1093/pcp/pcz228

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dimorphic Leaf Development of the Aquatic Plant Callitriche palustris L. Through Differential Cell Division and Expansion2020

    • Author(s)
      Koga Hiroyuki、Doll Yuki、Hashimoto Kei、Toyooka Kiminori、Tsukaya Hirokazu
    • Journal Title

      Frontiers in Plant Science

      Volume: 11 Pages: 269-269

    • DOI

      10.3389/fpls.2020.00269

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of the Poly(A) Status of Mitochondrial mRNA by Poly(A)-Specific Ribonuclease Is Conserved among Land Plants2019

    • Author(s)
      Kanazawa Mai、Ikeda Yoko、Nishihama Ryuichi、Yamaoka Shohei、Lee Nam-Hee、Yamato Katsuyuki T、Kohchi Takayuki、Hirayama Takashi
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Issue: 3 Pages: 470-480

    • DOI

      10.1093/pcp/pcz212

    • NAID

      120006900804

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Lateral root initiation requires the sequential induction of transcription factors LBD16 and PUCHI in Arabidopsis thaliana2019

    • Author(s)
      Goh Tatsuaki、Toyokura Koichi、Yamaguchi Nobutoshi、Okamoto Yoshie、Uehara Takeo、Kaneko Shutaro、Takebayashi Yumiko、Kasahara Hiroyuki、Ikeyama Yoshifumi、Okushima Yoko、Nakajima Keiji、Mimura Tetsuro、Tasaka Masao、Fukaki Hidehiro
    • Journal Title

      New Phytologist

      Volume: 224 Issue: 2 Pages: 749-760

    • DOI

      10.1111/nph.16065

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Novel Katanin-Tethering Machinery Accelerates Cytokinesis2019

    • Author(s)
      Sasaki Takema、Tsutsumi Motosuke、Otomo Kohei、Murata Takashi、Yagi Noriyoshi、Nakamura Masayoshi、Nemoto Tomomi、Hasebe Mitsuyasu、Oda Yoshihisa
    • Journal Title

      Current Biology

      Volume: 29 Issue: 23 Pages: 4060-4070.e3

    • DOI

      10.1016/j.cub.2019.09.049

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Marchantia polymorpha, a New Model Plant for Autophagy Studies2019

    • Author(s)
      Norizuki T., Kanazawa T., Minamino N., Tsukaya H., Ueda T.
    • Journal Title

      Frontiers in Plant Science

      Volume: 10 Pages: 935-935

    • DOI

      10.3389/fpls.2019.00935

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multiple steps of leaf thickening during sun‐leaf formation in Arabidopsis2019

    • Author(s)
      Hoshino Rina、Yoshida Yuki、Tsukaya Hirokazu
    • Journal Title

      The Plant Journal

      Volume: 100 Issue: 4 Pages: 738-753

    • DOI

      10.1111/tpj.14467

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Morphological characterization of domatium development in Callicarpa saccata2019

    • Author(s)
      Sarath Emma、Ezaki Kazune、Sasaki Takenori、Maekawa Yu、Sawada Yuji、Hirai Masami Yokota、Soejima Akiko、Tsukaya Hirokazu
    • Journal Title

      Annals of Botany

      Volume: 125 Issue: 3 Pages: 521-532

    • DOI

      10.1093/aob/mcz193

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Enrichment of Phosphatidylinositol 4,5-Bisphosphate in the Extra-Invasive Hyphal Membrane Promotes Colletotrichum Infection of Arabidopsis thaliana2019

    • Author(s)
      Shimada Takashi L、Betsuyaku Shigeyuki、Inada Noriko、Ebine Kazuo、Fujimoto Masaru、Uemura Tomohiro、Takano Yoshitaka、Fukuda Hiroo、Nakano Akihiko、Ueda Takashi
    • Journal Title

      Plant and Cell Physiology

      Volume: 60 Issue: 7 Pages: 1514-1524

    • DOI

      10.1093/pcp/pcz058

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Presentation] Uncovering Hidden Aspects of Plant Root Development Using Motion-tracking Confocal Microscopyand AI-assisted Image Processing2024

    • Author(s)
      Keiji Nakajima
    • Organizer
      2024 International Conference of Korean Society of Plant Biologists
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Uncovering Hidden Principles in Plant Developmental Regulation with Live Microscope Imaging and Computer Vision2024

    • Author(s)
      Keiji Nakajima
    • Organizer
      7th International Conference on Digital Medicine and Image Processing and 11th International Conference on Biomedical and Bioinformatics Engineering
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 人と植物をつなげる人間拡張工学2023

    • Author(s)
      稲見昌彦
    • Organizer
      日本植物学会第87回大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] 植物発生学の基礎研究における画像認識技術の活用と今後の課題2023

    • Author(s)
      中島 敬二
    • Organizer
      コンピュータビジョンとイメージメディア研究会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 植物×人間拡張工学 -異分野「研究者」の融合2022

    • Author(s)
      中島 敬二
    • Organizer
      日本植物学会第86回大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 植物細胞における細胞壁蓄積制御メカニズムの視覚的解析と分子的理解2022

    • Author(s)
      佐々木 武馬,大伏 仙泰,ゴメス ギリアン,柏野 善大,稲見 昌彦,小田 祥久
    • Organizer
      日本植物学会第86回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ライブイメージング技術と顕微操作の統合により迫る細胞内ダイナミクス2022

    • Author(s)
      松本 光梨,中川 朔未,檜垣 匠,津川 暁,石本 志高,野々山 朋信,康 子辰,田中 美 虹,植田 美那子
    • Organizer
      日本植物学会第86回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 細胞表層力学の光操作とモデリング2022

    • Author(s)
      近藤 洋平,山本 啓,青木 一洋
    • Organizer
      日本植物学会第86回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] イメージング・AI 技術を駆使して植物精子の形成と運動の仕組みを理解する2022

    • Author(s)
      南野 尚紀,法月 拓也,藤井 春樹,八野田 奨,海老根 一生,真野 昌二,堀田 一 弘,上田 貴志
    • Organizer
      日本植物学会第86回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 細胞の周期動態とその変調が駆動する根の自在な成長2021

    • Author(s)
      中島敬二, 射水勝利, 大城翔平, 米倉崇晃, 田中慧太, 近藤洋平, 宮島俊介, 郷達明
    • Organizer
      日本植物学会第85回大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 細胞・オルガネラ動態の周期性表出の分子基盤を探る2021

    • Author(s)
      上田貴志
    • Organizer
      日本植物学会第85回大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 表現学習による周期と変調の比較形態学2021

    • Author(s)
      近藤洋平
    • Organizer
      日本植物学会第85回大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 受精卵と初期胚における周期と変調から解き明かす植物の体軸形成機構2021

    • Author(s)
      植田美那子, 小松大鳳, 田中小百合, 檜垣匠, 松本光梨, 木全祐資,鎌本直也, 藤本仰一, 東山哲也
    • Organizer
      日本植物学会第85回大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Live-cell imaging of the polarization dynamics of plant zygote2021

    • Author(s)
      Minako Ueda, Yusuke Kimata, Hikari Matsumoto, Takumi Higaki, Taiho Komatsu, Sayuri Tanka, Daisuke Kurihara, Tetsuya Higashiyama
    • Organizer
      第44回日本分子生物学会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Feature Sharing Cooperative Network for Semantic Segmentation2021

    • Author(s)
      Ikedo, R. and Hotta, K.
    • Organizer
      VISAPP2021
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cell image segmentation by Feature Random Enhancement Module2021

    • Author(s)
      Ando, T. and Hotta, K
    • Organizer
      VISAPP2021
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Leader-guiding collective cell rotation2020

    • Author(s)
      Matsushita, K., Yabunaka, S., Hashimura, H., Kuwayama, S. and Fujimoto, K
    • Organizer
      Proc. Symp. Simulation of Traffic Flow,
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Feedback Attention for Cell Image Segmentation2020

    • Author(s)
      Tsuda, H., Shibuya, E. and Hotta, K.
    • Organizer
      ECCV Workshop on Bioimage Computing (BIC2020)
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] CNN to Capsule Network Transformation.2020

    • Author(s)
      Sato, T. and Hotta, K
    • Organizer
      DICTA2020
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Feedback U-net for Cell Image Segmentation.2020

    • Author(s)
      Shibuya, E. and Hotta, K
    • Organizer
      CVPR Workshop on Computer Vision for Microscopy Image Analysis (CVMI2020)
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MagniFinger: magnified perception by a fingertip probe microscope.2019

    • Author(s)
      Obushi, N., Wakisaka, S., Kasahara, S., Hiyama, A., and Inami, M.
    • Organizer
      SIGGRAPH 2019 Emerging Technologies
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Book] 理論生物学概論2021

    • Author(s)
      望月 敦史
    • Total Pages
      328
    • Publisher
      共立出版
    • ISBN
      9784320058309
    • Related Report
      2021 Annual Research Report
  • [Remarks] 研究成果動画公開 Youtubeチャネル

    • URL

      https://www.youtube.com/@pm_plant

    • Related Report
      2023 Annual Research Report
  • [Remarks] 領域ホームページ

    • URL

      https://plant-periodicity.org/

    • Related Report
      2023 Annual Research Report
  • [Remarks] 新学術領域研究「植物の周期と変調」

    • URL

      https://plant-periodicity.org/

    • Related Report
      2022 Annual Research Report
  • [Remarks] 植物の精子形成におけるオートファジーの役割を解明

    • URL

      https://www.nibb.ac.jp/press/2022/06/15.html

    • Related Report
      2022 Annual Research Report
  • [Remarks] 植物は細胞を"寿司詰め"にして形を整える! 細胞を対称に配置するタンパク質を特定

    • URL

      https://www.naist.jp/pressrelease/2023/02/009646.html

    • Related Report
      2022 Annual Research Report
  • [Remarks] 花びらの形が葉と違う仕組みを解明

    • URL

      https://www.s.u-tokyo.ac.jp/ja/press/2022/8175/

    • Related Report
      2022 Annual Research Report
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Published: 2019-07-04   Modified: 2026-01-16  

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