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Synthetic Biology for the Comprehension of Biomolecular Networks

Administrative Group

Project AreaSynthetic biology for the comprehension of biomolecular networks
Project/Area Number 23119001
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionKyushu University

Principal Investigator

OKAMOTO MASAHIRO  九州大学, (連合)農学研究科(研究院), 教授 (40211122)

Co-Investigator(Renkei-kenkyūsha) Hanai Taizo  九州大学, 大学院農学研究院, 准教授 (60283397)
Tagawa Yoichi  東京工業大学, 大学院生命理工学研究科, 准教授 (70262079)
Tsuge Kenji  慶応義塾大学, 大学院政策・メディア研究科, 講師 (70399690)
Kiga Daisuke  東京工業大学, 大学院総合理工学研究院, 准教授 (30376587)
Rondelez Yannick  東京大学, 生産技術研究所, 准教授 (10548770)
Suyama Akira  東京大学, 大学院総合文化研究科, 教授 (90163063)
Yamamura Masayuki  東京工業大学, 大学院総合理工学研究院, 教授 (00220442)
Iba Hitoshi  東京大学, 大学院工学系研究院, 教授 (40302773)
Project Period (FY) 2011-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥61,100,000 (Direct Cost: ¥47,000,000、Indirect Cost: ¥14,100,000)
Fiscal Year 2015: ¥14,560,000 (Direct Cost: ¥11,200,000、Indirect Cost: ¥3,360,000)
Fiscal Year 2014: ¥11,310,000 (Direct Cost: ¥8,700,000、Indirect Cost: ¥2,610,000)
Fiscal Year 2013: ¥13,000,000 (Direct Cost: ¥10,000,000、Indirect Cost: ¥3,000,000)
Fiscal Year 2012: ¥10,920,000 (Direct Cost: ¥8,400,000、Indirect Cost: ¥2,520,000)
Fiscal Year 2011: ¥11,310,000 (Direct Cost: ¥8,700,000、Indirect Cost: ¥2,610,000)
Keywordsシステムゲノム科学 / 生物工学 / システム生物学 / マイクロ流体デバイス / 細胞分化 / ゲノム情報科学 / タンパク質工学 / システム最適化 / 合成生物学 / システムゲノム / 進化工学 / 最適化問題 / 数理モデル / 人工遺伝子回路 / 人工代謝経路 / ゲノムデザイン
Outline of Final Research Achievements

In order to make the paradigm shift from the concept of “watched and analyzed biology” to that of “synthetic and analyzed or utilized biology”, the innovative research named Synthetic Biology was started from 2000 in US, such as designing synthetic genetic circuit by combining known interrelated biomaterials, realizing a certain bio-functional behaviors
such as switch, oscillation, in vivo, designing synthetic metabolic pathways by incorporating enzyme coded genes from other origins into the cells. The objectives of this research project is to establish the coordination between the fundamental technologies for synthetic biology in order to comprehend biomolecular networks by integrating the following three missions: 1)design synthetic genetic circuit or metabolic pathway with using the methods of computational science, 2) construct the circuit
in vitro with using the method of engineering, 3) construct the circuit in vivo or in the cell with using the methods of molecular biology.

Report

(6 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (11 results)

All 2016 2015 2013 2012 2011 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (1 results) (of which Invited: 1 results) Book (1 results) Remarks (2 results) Funded Workshop (1 results)

  • [Journal Article] 合成システム生物学の展望2016

    • Author(s)
      岡本正宏
    • Journal Title

      生物工学

      Volume: 94(4) Pages: 3-5

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Investigating noise tolerance in an efficient engine for inferring biological regulatory networks2015

    • Author(s)
      Asako Komori, Yukihiro Maki, Isao Ono, Masahiro Okamoto
    • Journal Title

      Journal of Bioinformatics and Computational Biology

      Volume: 13 Issue: 03 Pages: 1541006-1541006

    • DOI

      10.1142/s0219720015410061

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 合成生物工学の技術的展望2013

    • Author(s)
      岡本正宏
    • Journal Title

      生物工学会誌

      Volume: 91(6) Pages: 309-313

    • NAID

      110009616004

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Efficient numerical optimization algorithm based on new real-coded genetic algorithm, AREX + JGG and application to the inverse problem in systems biology2012

    • Author(s)
      Asako Komori, Yukihiro Maki, Masahiko Nakatsui, Isao Ono, and Masahiro Okamoto
    • Journal Title

      Applied Mathematis

      Volume: 3 Issue: 10 Pages: 1463-1470

    • DOI

      10.4236/am.2012.330205

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 交通信号連携制御のような代謝工学?2011

    • Author(s)
      岡本正宏
    • Journal Title

      生物工学会誌

      Volume: 89 Pages: 615-615

    • NAID

      110008750636

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Time-dependent Changes in the Plasma Amino Acid Concentration in Diabetes Mellitus2011

    • Author(s)
      T.Mochida, et al
    • Journal Title

      Molecular Genetics and Metabolism

      Volume: 103 Issue: 4 Pages: 406-409

    • DOI

      10.1016/j.ymgme.2011.05.002

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] Synthetic Systems Biology for the Comprehension of Biomolecular Networks2013

    • Author(s)
      Masahiro Okamoto
    • Organizer
      Frontiers in Systems and Syhthetic Biology'13
    • Place of Presentation
      Atlanta, USA
    • Year and Date
      2013-03-20
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Book] 合成生物工学の隆起:有用物質の新たな生産法構築をめざして2012

    • Author(s)
      厨祐喜、岡本正宏
    • Total Pages
      227
    • Publisher
      代謝工学によるバイオアルコール生産の向上
    • Related Report
      2011 Annual Research Report
  • [Remarks] 動的・多要素な生体分子ネットワークを理解するための合成生物学の基盤構築

    • URL

      http://www.syn-biol.com

    • Related Report
      2014 Annual Research Report
  • [Remarks] 動的・多要素な生体分子ネットワークを理解するための合成生物学の基盤構築

    • URL

      http://www.syn-biol.com

    • Related Report
      2013 Annual Research Report
  • [Funded Workshop] International Symposium on Synthetic Systems Biology 20152015

    • Place of Presentation
      Fukuoka
    • Year and Date
      2015-09-17
    • Related Report
      2015 Annual Research Report

URL: 

Published: 2011-08-01   Modified: 2019-07-29  

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