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Strategic Structural Study of the Protom Motive Force

Planned Research

Project AreaNew Photosynthesis : Reoptimization of the solar energy conversion system
Project/Area Number 16H06560
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionOsaka University

Principal Investigator

KURISU GENJI  大阪大学, 蛋白質研究所, 教授 (90294131)

Co-Investigator(Kenkyū-buntansha) 斉藤 圭亮  東京大学, 先端科学技術研究センター, 准教授 (20514516)
Project Period (FY) 2016-06-30 – 2021-03-31
Project Status Completed (Fiscal Year 2020)
Budget Amount *help
¥97,500,000 (Direct Cost: ¥75,000,000、Indirect Cost: ¥22,500,000)
Fiscal Year 2020: ¥19,240,000 (Direct Cost: ¥14,800,000、Indirect Cost: ¥4,440,000)
Fiscal Year 2019: ¥18,980,000 (Direct Cost: ¥14,600,000、Indirect Cost: ¥4,380,000)
Fiscal Year 2018: ¥18,850,000 (Direct Cost: ¥14,500,000、Indirect Cost: ¥4,350,000)
Fiscal Year 2017: ¥19,240,000 (Direct Cost: ¥14,800,000、Indirect Cost: ¥4,440,000)
Fiscal Year 2016: ¥21,190,000 (Direct Cost: ¥16,300,000、Indirect Cost: ¥4,890,000)
Keywords構造生物化学 / 生物物理学 / 生体エネルギー変換 / 光合成 / エネルギー変換 / 生物物理 / 構造生物学 / エネルギー変換反応 / 電子伝達 / 立体構造 / 植物 / 蛋白質 / 生体分子
Outline of Final Research Achievements

Focusing on the "Proton motive force" which has been a weak point of structural biology, we have been able to advance structural analysis including hydrogen atoms by combining theoretical chemical calculations with X-ray structural analysis, NMR, and cryo-electron microscopy. By using this approach, we were able to identify the structural basis for the photosynthetic function, and for some of them, we were able to find out the bottleneck of supramolecular complex responsible for the photosynthetic reaction. Specifically, the structural basis of the proton transport pathway of the photosystem II complex, the pH-dependent interaction of the cytochrome b6f complex with FNR, the molecular mechanism of the Fd-dependent quinone reduction of the NDH complex, and the regulatory system mediated by the strong reducing power of ferredoxin were clarified. Our collaborative research with <A01> and <A02> groups has also yielded certain results.

Academic Significance and Societal Importance of the Research Achievements

生命が持つ階層構造に沿って生命秩序の形成を理解しようとした場合,低分子の認識機構についてある程度統一的に理解されているが,pHに依存する蛋白質間の相互作用を含むシステムの場合には統一的に理解されていなかった。本研究課題で掲げる『構造を基盤としたプロトン排出の戦略的分子設計』では,素反応がネットワークとして機能する光合成反応システムに対し,計算化学,X線結晶解析,NMR,クライオ電子顕微鏡とあらゆる構造解析手法を相補的に活用し,A01,A02の各班との共同研究を進めることで,光合成構造生物学を単純な分子素子の解析から,より高次な生体機能の理解へと遷移させる新しい研究の方向性を示すことができた。

Report

(6 results)
  • 2020 Annual Research Report   Final Research Report ( PDF )
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • Research Products

    (97 results)

All 2021 2020 2019 2018 2017 2016 Other

All Int'l Joint Research (11 results) Journal Article (51 results) (of which Int'l Joint Research: 18 results,  Peer Reviewed: 50 results,  Open Access: 38 results,  Acknowledgement Compliant: 2 results) Presentation (33 results) (of which Int'l Joint Research: 15 results,  Invited: 18 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] Ruhr University Bochum/Max Plank Institute of Biochemistry(ドイツ)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] University of Muenster(ドイツ)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Purdue University(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Ruhr University Bochum/Max Planck Institute of Biochemistry(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of Muenster(ドイツ)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Queen Mary University of London(英国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Purdue University(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Ruhr University Bochum/Max Planck Institute of Biochemistry(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] University of Muenster(ドイツ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] Department of Plant Physiology/University of Muenster(ドイツ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Department of Biology/Ruhr University Bochum(ドイツ)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster2021

    • Author(s)
      Coruh Orkun、Frank Anna、Tanaka Hideaki、Kawamoto Akihiro、El-Mohsnawy Eithar、Kato Takayuki、Namba Keiichi、Gerle Christoph、Nowaczyk Marc M.、Kurisu Genji
    • Journal Title

      Communications Biology

      Volume: 4 Issue: 1 Pages: 304-304

    • DOI

      10.1038/s42003-021-01808-9

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystallographic analysis and phasing of iron-assimilating protein 1 (FEA1) from Chlamydomonas reinhardtii2021

    • Author(s)
      Juniar Linda、Adlfar Vida、Hippler Michael、Tanaka Hideaki、Kurisu Genji
    • Journal Title

      Acta Crystallographica Section F Structural Biology Communications

      Volume: 77 Issue: 5 Pages: 134-139

    • DOI

      10.1107/s2053230x21003952

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin2021

    • Author(s)
      Tohda Rei、Tanaka Hideaki、Mutoh Risa、Zhang Xuhong、Lee Young-Ho、Konuma Tsuyoshi、Ikegami Takahisa、Migita Catharina T.、Kurisu Genji
    • Journal Title

      Journal of Biological Chemistry

      Volume: 296 Pages: 100217-100217

    • DOI

      10.1074/jbc.ra120.016271

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nature of Asymmetric Electron Transfer in the Symmetric Pathways of Photosystem I2021

    • Author(s)
      Mitsuhashi Koji、Tamura Hiroyuki、Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 125 Issue: 11 Pages: 2879-2885

    • DOI

      10.1021/acs.jpcb.0c10885

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mechanism of absorption wavelength shifts in anion channelrhodopsin-1 mutants2021

    • Author(s)
      Tsujimura Masaki、Noji Tomoyasu、Saito Keisuke、Kojima Keiichi、Sudo Yuki、Ishikita Hiroshi
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Bioenergetics

      Volume: 1862 Issue: 2 Pages: 148349-148349

    • DOI

      10.1016/j.bbabio.2020.148349

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Proton transfer pathway from the oxygen-evolving complex in photosystem II substantiated by extensive mutagenesis2021

    • Author(s)
      Kuroda Hiroshi、Kawashima Keisuke、Ueda Kazuyo、Ikeda Takuya、Saito Keisuke、Ninomiya Ryo、Hida Chisato、Takahashi Yuichiro、Ishikita Hiroshi
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Bioenergetics

      Volume: 1862 Issue: 1 Pages: 148329-148329

    • DOI

      10.1016/j.bbabio.2020.148329

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Two Distinct Oxygen-Radical Conformations in the X-ray Free Electron Laser Structures of Photosystem II2021

    • Author(s)
      Mandal Manoj、Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 12 Issue: 16 Pages: 4032-4037

    • DOI

      10.1021/acs.jpclett.1c00814

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Origin of unidirectional charge separation in photosynthetic reaction centers: nonadiabatic quantum dynamics of exciton and charge in the pigment-protein complexes2021

    • Author(s)
      Hiroyuki Tamura, Keisuke Saito, Hiroshi Ishikita
    • Journal Title

      Chem. Sci.

      Volume: in press

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of redox-inactive metals in controlling the redox potential of heterometallic manganese-oxido clusters2021

    • Author(s)
      Keisuke Saito, Minesato Nakagawa, Manoj Mandal, Hiroshi Ishikita
    • Journal Title

      Photosynth. Res.

      Volume: in press

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for thioredoxin isoform-based fine-tuning of ferredoxin-thioredoxin reductase activity2020

    • Author(s)
      Juniar L., Tanaka H., Yoshida K., Hisabori T., Kurisu G.
    • Journal Title

      Protein Sci.

      Volume: 29 Issue: 12 Pages: 2538-2545

    • DOI

      10.1002/pro.3964

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cryogenic Single-Molecule Spectroscopy of the Primary Electron Acceptor in Photosynthetic Reaction Center2020

    • Author(s)
      T. Kondo, R. Mutoh, H. Tabe, G. Kurisu, H. Oh-oka, S. Fujiyoshi, and M. Matsushita
    • Journal Title

      J. Phys. Chem. Lett.

      Volume: - Issue: 10 Pages: 3980-3986

    • DOI

      10.1021/acs.jpclett.0c00891

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Acquirement of water-splitting ability and alteration of the charge-separation mechanism in photosynthetic reaction centers2020

    • Author(s)
      Tamura Hiroyuki、Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Issue: 28 Pages: 16373-16382

    • DOI

      10.1073/pnas.2000895117

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Rigidly hydrogen-bonded water molecules facilitate proton transfer in photosystem II2020

    • Author(s)
      Sakashita Naoki、Ishikita Hiroshi、Saito Keisuke
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 22 Issue: 28 Pages: 15831-15841

    • DOI

      10.1039/d0cp00295j

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] pKa of the ligand water molecules in the oxygen-evolving Mn4CaO5 cluster in photosystem II2020

    • Author(s)
      Saito Keisuke、Nakagawa Minesato、Ishikita Hiroshi
    • Journal Title

      Communications Chemistry

      Volume: 3 Issue: 1 Pages: 89-89

    • DOI

      10.1038/s42004-020-00336-7

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Energetics of Ionized Water Molecules in the H-Bond Network near the Ca2+ and Cl? Binding Sites in Photosystem II2020

    • Author(s)
      Saito Keisuke、Mandal Manoj、Ishikita Hiroshi
    • Journal Title

      Biochemistry

      Volume: 59 Issue: 35 Pages: 3216-3224

    • DOI

      10.1021/acs.biochem.0c00177

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Dependence of the chlorophyll wavelength on the orientation of a charged group: Why does the accessory chlorophyll have a low site energy in photosystem II?2020

    • Author(s)
      Saito Keisuke、Mitsuhashi Koji、Ishikita Hiroshi
    • Journal Title

      Journal of Photochemistry and Photobiology A: Chemistry

      Volume: 402 Pages: 112799-112799

    • DOI

      10.1016/j.jphotochem.2020.112799

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Redox potentials along the redox-active low-barrier H-bonds in electron transfer pathways2020

    • Author(s)
      Saito Keisuke、Mandal Manoj、Ishikita Hiroshi
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 22 Issue: 44 Pages: 25467-25473

    • DOI

      10.1039/d0cp04265j

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Nature of the Short Oxygen?Oxygen Distance in the Mn4CaO6 Complex of Photosystem II Crystals2020

    • Author(s)
      Mandal Manoj、Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 11 Issue: 23 Pages: 10262-10268

    • DOI

      10.1021/acs.jpclett.0c02868

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Chlorophyllide a oxidoreductase preferentially catalyzes 8‐vinyl reduction over B‐ring reduction of 8‐vinyl chlorophyllide a in late steps of bacteriochlorophyll biosynthesis2020

    • Author(s)
      Yamamoto Haruki、Mizoguchi Tadashi、Tsukatani Yusuke、Tamiaki Hitoshi、Kurisu Genji、Fujita Yuichi
    • Journal Title

      ChemBioChem

      Volume: - Issue: 12 Pages: 1760-1766

    • DOI

      10.1002/cbic.201900785

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii2020

    • Author(s)
      Ohnishi Yusuke、Muraki Norifumi、Kiyota Daiki、Okumura Hideo、Baba Seiki、Kawano Yoshiaki、Kumasaka Takashi、Tanaka Hideaki、Kurisu Genji
    • Journal Title

      The Journal of Biochemistry

      Volume: Epub ahead of print Issue: 6 Pages: 1-7

    • DOI

      10.1093/jb/mvaa045

    • NAID

      40022260348

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Redox-coupled proton pumping drives carbon concentration in the photosynthetic complex I2020

    • Author(s)
      Schuller Jan M.、Saura Patricia、Thiemann Jacqueline、Schuller Sandra K.、Gamiz-Hernandez Ana P.、Kurisu Genji、Nowaczyk Marc M.、Kaila Ville R. I.
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 494-494

    • DOI

      10.1038/s41467-020-14347-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Vectorial Proton Transport Mechanism of RxR, a Phylogenetically Distinct and Thermally Stable Microbial Rhodopsin2020

    • Author(s)
      Kojima Keiichi、Ueta Tetsuya、Noji Tomoyasu、Saito Keisuke、Kanehara Kanae、Yoshizawa Susumu、Ishikita Hiroshi、Sudo Yuki
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s41598-019-57122-2

    • NAID

      120006884916

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Kinetic and structural insight into a role of the re-face Tyr328 residue of the homodimer type ferredoxin-NADP+ oxidoreductase from Rhodopseudomonas palustris in the reaction with NADP+/NADPH2020

    • Author(s)
      Seo Daisuke、Muraki Norifumi、Kurisu Genji
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Bioenergetics

      Volume: 1861 Issue: 3 Pages: 148140-148140

    • DOI

      10.1016/j.bbabio.2019.148140

    • NAID

      120006873423

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Redox Potential of the Oxygen-Evolving Complex in the Electron Transfer Cascade of Photosystem II2019

    • Author(s)
      Mandal Manoj、Kawashima Keisuke、Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 11 Issue: 1 Pages: 249-255

    • DOI

      10.1021/acs.jpclett.9b02831

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mechanism of protonation of the over-reduced Mn4CaO5 cluster in photosystem II2019

    • Author(s)
      Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Bioenergetics

      Volume: 1860 Issue: 10 Pages: 148059-148059

    • DOI

      10.1016/j.bbabio.2019.148059

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Calcium sensing via EF-hand 4 enables thioredoxin activity in the sensor-responder protein calredoxin in the green alga Chlamydomonas reinhardtii2019

    • Author(s)
      Charoenwattanasatien Ratana、Zinzius Karen、Scholz Martin、Wicke Susann、Tanaka Hideaki、Brandenburg Johann S.、Marchetti Giulia M.、Ikegami Takahisa、Matsumoto Takashi、Oda Takashi、Sato Mamoru、Hippler Michael、Kurisu Genji
    • Journal Title

      Journal of Biological Chemistry

      Volume: 295 Issue: 1 Pages: 170-180

    • DOI

      10.1074/jbc.ra119.008735

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Multicolor redox sensor proteins can visualize redox changes in various compartments of the living cell2019

    • Author(s)
      Sugiura Kazunori、Tanaka Hideaki、Kurisu Genji、Wakabayashi Ken-ichi、Hisabori Toru
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1863 Issue: 6 Pages: 1098-1107

    • DOI

      10.1016/j.bbagen.2019.01.016

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Electron transport pathways in isolated chromoplasts from Narcissus pseudonarcissus L.2019

    • Author(s)
      Grabsztunowicz Magda、Mulo Paula、Baymann Frauke、Mutoh Risa、Kurisu Genji、Setif Pierre、Beyer Peter、Krieger‐Liszkay Anja
    • Journal Title

      The Plant Journal

      Volume: - Issue: 2 Pages: 245-256

    • DOI

      10.1111/tpj.14319

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer2018

    • Author(s)
      Schuller Jan M.、Birrell James A.、Tanaka Hideaki、Konuma Tsuyoshi、Wulfhorst Hannes、Cox Nicholas、Schuller Sandra K.、Thiemann Jacqueline、Lubitz Wolfgang、Setif Pierre、Ikegami Takahisa、Engel Benjamin D.、Kurisu Genji、Nowaczyk Marc M.
    • Journal Title

      Science

      Volume: 363 Issue: 6424 Pages: 257-260

    • DOI

      10.1126/science.aau3613

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] X-ray structure of an asymmetrical trimeric ferredoxin-photosystem I complex2018

    • Author(s)
      Kubota-Kawai Hisako、Mutoh Risa、Shinmura Kanako、Setif Pierre、Nowaczyk Marc M.、Rogner Matthias、Ikegami Takahisa、Tanaka Hideaki、Kurisu Genji
    • Journal Title

      Nature Plants

      Volume: 4 Issue: 4 Pages: 218-224

    • DOI

      10.1038/s41477-018-0130-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] X-ray crystallographic and high-speed AFM studies of peroxiredoxin 1 from Chlamydomonas reinhardtii2018

    • Author(s)
      Charoenwattanasatien Ratana、Tanaka Hideaki、Zinzius Karen、Hochmal Ana K.、Mutoh Risa、Yamamoto Daisuke、Hippler Michael、Kurisu Genji
    • Journal Title

      Acta Crystallographica Section F Structural Biology Communications

      Volume: 74 Issue: 2 Pages: 86-91

    • DOI

      10.1107/s2053230x17018507

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Mechanism of Radical Formation in the H-Bond Network of D1-Asn298 in Photosystem II2018

    • Author(s)
      Kawashima Keisuke、Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 33 Pages: 4997-5004

    • DOI

      10.1021/acs.biochem.8b00574

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Selective Removal of B800 Bacteriochlorophyll a from Light-Harvesting Complex 2 of the Purple Photosynthetic Bacterium Phaeospirillum molischianum2018

    • Author(s)
      Saga Yoshitaka、Hirota Keiya、Matsui Sayaka、Asakawa Hitoshi、Ishikita Hiroshi、Saito Keisuke
    • Journal Title

      Biochemistry

      Volume: 57 Issue: 21 Pages: 3075-3083

    • DOI

      10.1021/acs.biochem.8b00259

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Energetic insights into two electron transfer pathways in light-driven energy-converting enzymes2018

    • Author(s)
      K. Kawashima, H. Ishikita
    • Journal Title

      Chem. Sci.

      Volume: 9 Issue: 17 Pages: 4083-4092

    • DOI

      10.1039/c8sc00424b

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] O2 evolution and recovery of the water-oxidizing enzyme2018

    • Author(s)
      Kawashima Keisuke、Takaoka Tomohiro、Kimura Hiroki、Saito Keisuke、Ishikita Hiroshi
    • Journal Title

      Nature Communications

      Volume: 9 Issue: 1 Pages: 1247-1247

    • DOI

      10.1038/s41467-018-03545-w

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Absorption-energy calculations of chlorophyll a and b with an explicit solvent model2018

    • Author(s)
      Saito Keisuke、Suzuki Takumi、Ishikita Hiroshi
    • Journal Title

      Journal of Photochemistry and Photobiology A: Chemistry

      Volume: 358 Pages: 422-431

    • DOI

      10.1016/j.jphotochem.2017.10.003

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Absorption-energy calculations of chlorophyll a and b with an explicit solvent model2018

    • Author(s)
      K. Saito, T. Suzuki, H. Ishikita
    • Journal Title

      J. Photochem. Photobiol. A

      Volume: 358 Pages: 422-431

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics and energetics of cyanobacterial photosystem I:ferredoxin complexes in different redox states2017

    • Author(s)
      Setif Pierre、Mutoh Risa、Kurisu Genji
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - Bioenergetics

      Volume: 1858 Issue: 7 Pages: 483-496

    • DOI

      10.1016/j.bbabio.2017.04.001

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Association of ferredoxin:NADP+ oxidoreductase with the photosynthetic apparatus modulates electron transfer in Chlamydomonas reinhardtii.2017

    • Author(s)
      Mosebach, L., Heilmann, C., Mutoh, R., Gaebelein, P., Steinbeck, J., Happe, T., Ikegami, T., Hanke, G., Kurisu, G., Hippler, M.
    • Journal Title

      Photosynth. Res.

      Volume: 134 Issue: 3 Pages: 291-306

    • DOI

      10.1007/s11120-017-0408-5

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural Factors That Alter the Redox Potential of Quinones in Cyanobacterial and Plant Photosystem I2017

    • Author(s)
      Kawashima Keisuke、Ishikita Hiroshi
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 24 Pages: 3019-3028

    • DOI

      10.1021/acs.biochem.7b00082

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Origins of water molecules in the photosystem II crystal structure2017

    • Author(s)
      Naoki Sakashita, Hiroshi C. Watanabe, Takuya Ikeda, Keisuke Saito, Hiroshi Ishikita
    • Journal Title

      Biochemistry

      Volume: 56 Issue: 24 Pages: 3049-3057

    • DOI

      10.1021/acs.biochem.7b00220

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Existence of an Isolated Hydronium Ion in the Interior of Proteins2017

    • Author(s)
      Ikeda Takuya、Saito Keisuke、Hasegawa Ryo、Ishikita Hiroshi
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 56 Issue: 31 Pages: 9151-9154

    • DOI

      10.1002/anie.201705512

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cation solvation with quantum chemical effects modeled by a size-consistent multi-partitioning quantum mechanics/molecular mechanics method2017

    • Author(s)
      Hiroshi C. Watanabe, Maximilian Kubillus, Tomas Kubar, Robert Stach, Boris Mizaikoff, Hiroshi Ishikita
    • Journal Title

      Physical Chemistry Chemical Physics

      Volume: 19 Issue: 27 Pages: 17985-17997

    • DOI

      10.1039/c7cp01708a

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Redox potentials of ubiquinone, menaquinone, phylloquinone, and plastoquinone in aqueous solution2017

    • Author(s)
      Kishi, K. Saito, Y. Kato, H. Ishikita
    • Journal Title

      Photosynth. Res

      Volume: 134 Issue: 2 Pages: 193-200

    • DOI

      10.1007/s11120-017-0433-4

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Reply to Breuer et al.: Molecular dynamics simulations do not provide functionally relevant values of redox potential in MtrF2017

    • Author(s)
      Hiroshi C. Watanabe, Yuki Yamashita, Hiroshi Ishikita
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 201717048 Issue: 47 Pages: 201717048-201717048

    • DOI

      10.1073/pnas.1717048114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] pKa of ubiquinone, menaquinone, phylloquinone, plastoquinone, and rhodoquinone in aqueous solution2017

    • Author(s)
      Ryo Hasegawa, Keisuke Saito, Tomohiro Takaoka, and Hiroshi Ishikita*
    • Journal Title

      Photosynth. Res.

      Volume: 印刷中 Issue: 1-3 Pages: 297-304

    • DOI

      10.1007/s11120-017-0382-y

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structurally conserved channels in cyanobacterial and plant photosystem II2017

    • Author(s)
      Naoki Sakashita, Hiroshi C. Watanabe, Takuya Ikeda, and Hiroshi Ishikita*
    • Journal Title

      Photosynth. Res.

      Volume: 印刷中 Issue: 1-3 Pages: 75-85

    • DOI

      10.1007/s11120-017-0347-1

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] 光合成水分解反応におけるプロトン移動2017

    • Author(s)
      斉藤圭亮
    • Journal Title

      生物物理

      Volume: 330 Pages: 098-100

    • NAID

      130005509477

    • Related Report
      2016 Annual Research Report
    • Open Access
  • [Journal Article] Energetic basis on interactions between ferredoxin and ferredoxin NADP+ reductase at varying physiological conditions.2016

    • Author(s)
      Kinoshita, M., Kim, J.Y., S., Lin, Y., Hun Mok K., Kataoka, Y., Ishimori, K., Markova, N., Kurisu, G., Hase, T., Lee, Y.H.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 482 Issue: 4 Pages: 909-915

    • DOI

      10.1016/j.bbrc.2016.11.132

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Calredoxin represents a novel type of calcium-dependent sensor-responder connected to redox regulation in the chloroplast.2016

    • Author(s)
      Hochmal, A.K., Zinzius, K., Charoenwattanasatien, R., Gabelein, P., Mutoh, R., Tanaka, H., Schulze, S., Liu, G., Scholz, M., Nordhues, A., Offenborn, J.N., Petroutsos, D., Finazzi, G., Fufezan, C., Huang, K., Kurisu, G. Hippler, M.
    • Journal Title

      Nature Commun.

      Volume: 7 Issue: 1 Pages: 11847-11847

    • DOI

      10.1038/ncomms11847

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Non-covalent forces tune the electron transfer complex between ferredoxin and sulfite reductase to optimize enzymatic activity2016

    • Author(s)
      1.Kim, J.-Y., Kinoshita, M., Kume, S., Hanke, G.T., Sugiki, T., Ladbury, J.E., Kojima, C., Ikegami, T., Kurisu, G., Goto, Y., Hase, T. and Lee, Y.-H.
    • Journal Title

      Biochemical Journal

      Volume: 473 Issue: 21 Pages: 3837-3854

    • DOI

      10.1042/bcj20160658

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Presentation] プロトン駆動力形成を担う膜タンパク質の構造基盤2021

    • Author(s)
      栗栖源嗣
    • Organizer
      第62回日本植物生理学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Structural Studies of Photosynthetic Membrane Protein Complex and Related Redox Proteins, and COVID-19 Related Protein Database2020

    • Author(s)
      栗栖源嗣
    • Organizer
      第61回日本植物生理学会年会サテライトシンポジウム
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural Basis for the Ferredoxin-dependent Photosynthetic Electron Transfer2020

    • Author(s)
      栗栖源嗣
    • Organizer
      Federation of the Korean Societies for Biomolecular Sciences
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 電子伝達タンパク質フェレドキシンと膜タンパク質との相互作用様式2019

    • Author(s)
      栗栖源嗣
    • Organizer
      2019年度日本生化学会九州支部例会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Updated X-ray structure of the Type-I Reaction Center from Heliobacterium modesticaldum at 2.28 A resolution2019

    • Author(s)
      Kurisu, Genji
    • Organizer
      Gordon Research Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 光合成型複合体Iがフェレドキシン依存性を示す構造基盤2019

    • Author(s)
      栗栖源嗣
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural basis for the ferredoxin-dependency of NADH dehydrogenase-like complex I2019

    • Author(s)
      Kurisu, Genji
    • Organizer
      16th Conference of the Asian Crystallographic Association
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] In and out of the membrane: cryo-EM of membrane proteins2019

    • Author(s)
      Gerle, Christoph
    • Organizer
      16th Conference of the Asian Crystallographic Association
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 光合成型複合体Iがフェレドキシン依存性を示す構造基盤2019

    • Author(s)
      栗栖源嗣
    • Organizer
      日本光合成学会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Structural atlas of Ferredoxin-dependent proteins in the Protein data Bank2018

    • Author(s)
      栗栖源嗣
    • Organizer
      RUB Japan Science Days, Ruhr University Bochum,
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] X-ray and NMR studies of the complex between Ferredoxin and Photosystem I2018

    • Author(s)
      栗栖源嗣
    • Organizer
      20th European Bioenergetics Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural atlas of the electron transfer complexes of ferredoxin and its partner protein2018

    • Author(s)
      栗栖源嗣
    • Organizer
      International Symposium on Photosynthesis and Chloroplast Biogenesis
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Proton release, O2 evolution, water incorporation, and recovery of the water-oxidizing enzyme2018

    • Author(s)
      Hiroshi Ishikita
    • Organizer
      5th International Workshop on Solar Energy for Sustainability、Nanyang Technological University, Singapore
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 酸化還元応答蛍光タンパク質Re-QyのX線結晶構造解析2017

    • Author(s)
      田伏菜美、杉浦一徳、久堀徹、森田潤司、田中秀明、栗栖源嗣
    • Organizer
      第30回日本放射光学会年会
    • Place of Presentation
      神戸芸術センター(兵庫県、神戸市)
    • Year and Date
      2017-01-08
    • Related Report
      2016 Annual Research Report
  • [Presentation] X-ray Structure and NMR analysis of the electron transfer complex between Ferredoxin and Photosystem I2017

    • Author(s)
      Tanaka, H
    • Organizer
      2nd Molecular and Cellular Life Sciences (MCLS), Surabaya (Indonesia)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] X-Ray Structure of the Type-1 Reaction Center from Heliobacterium modesticaldum at 3.2 A2017

    • Author(s)
      Kurisu, G
    • Organizer
      Gordon Research Conference, ME(USA)
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] X-ray structure and NMR analysis of the electron transfer complex between Photosystem I and Ferredoxin2017

    • Author(s)
      Tanaka H, Kubota-Kawai H, Mutoh R, Shinmura K, Setif P, Nowaczyk M, Roegner M, Ikegami T, Kurisu G
    • Organizer
      The 55th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 光化学系I-フェレドキシン電子伝達複合体のX線構造およびNMR解析2017

    • Author(s)
      田中秀明、河合寿子、武藤梨沙、ピエール セティフ、ノヴァチク マーク、レグナー マティアス、栗栖源嗣
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] ヘリオバクテリア反応中心の初期電荷分離スピン相関解析ラジカル対の捕捉2017

    • Author(s)
      Hiroyuki Tsukuno, Risa Mutoh, Hiroki Nagashima, Yasuhiro Kobori, Genji Kurisu, Hirozo Oh-oka
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 時間分解EPRでとらえる光合成反応中心初期電荷分離の制御機構2017

    • Author(s)
      三野 広幸, 佃野 弘幸, 武藤 理沙, 長嶋 宏樹, 小堀 康博, 栗栖 源嗣, 大岡 宏造
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 酸化型フェレドキシン結晶の X 線回折実験における還元損傷の確認と評価2017

    • Author(s)
      大西裕介、田中秀明、奥村英夫、馬場清喜、河野能顕、熊坂崇、栗栖源嗣
    • Organizer
      平成29年度日本結晶学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 根型フェレドキシン- +レドクターゼ結晶 線結晶構 解析2017

    • Author(s)
      伊勢茜,大西裕介, Kim Yu Jaen,田中秀明,栗栖源嗣
    • Organizer
      第31回日本放射光学会年会・放射光科学合同シンポジウム
    • Related Report
      2017 Annual Research Report
  • [Presentation] 酸化型フェレドキシンの精密な結晶構造解析に向けた、X 線損傷 の分光学的評価2017

    • Author(s)
      大西 裕介,田中 秀明,奥 村 英夫,馬場 清喜,河野 能顕,熊坂 崇,栗栖源嗣
    • Organizer
      日本化学会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Electron transfer and proton transfer in proteins2017

    • Author(s)
      Hiroshi Ishikita
    • Organizer
      Frontier Forum on Nanoscience, Dubrovnik, Croatia
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 電子伝達蛋白質がつないだもの2017

    • Author(s)
      石北 央
    • Organizer
      2017年 バイオ工学シンポジウム、大和屋本店、松山市
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 光合成蛋白質の理論解析で知るプロトンと水の移動経路2017

    • Author(s)
      斉藤圭亮
    • Organizer
      平成29年度ラン藻ゲノム交流会, 東京大学
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 生体分子活性サイトの構造機能相関解明への新規アプローチ2017

    • Author(s)
      Hiroshi Ishikita
    • Organizer
      第55回日本生物物理学会年会、熊本大学
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Theoretical investigation based on molecular structures reveals reaction mechanisms in photosynthetic membrane proteins2017

    • Author(s)
      Keisuke Saito
    • Organizer
      第55回生物物理学会年会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 光合成蛋白質内の水分子のシミュレーション2017

    • Author(s)
      斉藤圭亮
    • Organizer
      第5回JCAHPCセミナー、東京大学
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] X-ray Structure and NMR Analysis of the Electron Transfer Complex between Photosystem I and Ferredoxin2016

    • Author(s)
      H. Tanaka, H. Kubota-Kawai, R. Mutoh, K. Shinmura, P. Setif, M. Nowaczyk, M. Roegner, T. Ikegami, G. Kurisu
    • Organizer
      14th Conference of the Asian Crystallographic Association
    • Place of Presentation
      Hanoi Univ. of Science and Technology (Hanoi,Vietnam)
    • Year and Date
      2016-12-04
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Water-splitting enzyme photosystem II, a model for artificial photosynthesis2016

    • Author(s)
      H. Ishikita
    • Organizer
      UK-Japanese Frontiers of Science Symposium
    • Place of Presentation
      Chicheley Hall (Milton Keynes, UK)
    • Year and Date
      2016-11-07
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 蛋白質の理論化学解析で光合成反応をする2016

    • Author(s)
      斉藤圭亮
    • Organizer
      化学系学協会東北大会
    • Place of Presentation
      いわき明星大学(福島県、いわき市)
    • Year and Date
      2016-09-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] 構造に基づく理論解析で蛋白質の分子機構を探る2016

    • Author(s)
      斉藤圭亮
    • Organizer
      第1 0 回日本化学会東海支部若手研究者フォーラム
    • Place of Presentation
      名古屋大学(愛知県、名古屋市)
    • Related Report
      2016 Annual Research Report
  • [Book] Structural Perspective of Ferredoxin NAD(P)H Reductase Reactions with Cytochrome bf Complexes. In Cytochrome Complexes: Evolution, Structures, Energy Transduction, and Signaling2016

    • Author(s)
      Kurisu, G.
    • Publisher
      Springer
    • Related Report
      2016 Annual Research Report
  • [Remarks] 蛋白質結晶学研究室ホームページ

    • URL

      http://www.protein.osaka-u.ac.jp/crystallography/

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report 2018 Annual Research Report

URL: 

Published: 2016-07-04   Modified: 2022-01-27  

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