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Metabolic adaptation of inflammatory diseases

Planned Research

Project AreaTransomic Analysis of Metabolic Adaptation
Project/Area Number 17H06302
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionOsaka University

Principal Investigator

OKADA MARIKO  大阪大学, 蛋白質研究所, 教授 (10342833)

Project Period (FY) 2017-06-30 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥143,520,000 (Direct Cost: ¥110,400,000、Indirect Cost: ¥33,120,000)
Fiscal Year 2021: ¥24,960,000 (Direct Cost: ¥19,200,000、Indirect Cost: ¥5,760,000)
Fiscal Year 2020: ¥24,960,000 (Direct Cost: ¥19,200,000、Indirect Cost: ¥5,760,000)
Fiscal Year 2019: ¥24,960,000 (Direct Cost: ¥19,200,000、Indirect Cost: ¥5,760,000)
Fiscal Year 2018: ¥24,960,000 (Direct Cost: ¥19,200,000、Indirect Cost: ¥5,760,000)
Fiscal Year 2017: ¥43,680,000 (Direct Cost: ¥33,600,000、Indirect Cost: ¥10,080,000)
Keywordsシグナル伝達 / 炎症 / 免疫応答 / NF-kB / オミクス / B細胞 / クロマチン / ライブセルイメージング / エンハンサー / 代謝 / 転写制御 / 数理モデル / 発現制御 / がん / アダプテーション / 感染症 / アトピー性皮膚炎 / 転写因子 / NF-kappaB / 免疫学 / 癌
Outline of Final Research Achievements

NF-kB transcription factor controls induction of various genes in inflammation and immune response, however, their molecular basis largely remains unclear. In this study, we clarified the functional mechanism of NF-kB by quantitatively analyzing various omics data obtained from next-generation sequences using immune B cells, breast cancer cells, and atopic dermatitis animal models. As a result, it was shown that the chromatin opening in the enhancer and promoter regions and the number of DNA bindings of the NF-kB molecule are important for enhancing the expression of the target gene by NF-kB. It was also shown that NF-kB induces liquid-liquid phase separation (LLPS) -like molecular interactions in the nucleus and increases cellular heterogeneity in gene expression.

Academic Significance and Societal Importance of the Research Achievements

炎症疾患や免疫応答において、NF-kB転写因子は重要な働きを示す。このような疾患において、特に問題となるのは、ある時突然に症状が現れ、それがなかなかもとに戻らない状態になることである。このような反応は、生体内の反応が閾値を超えたため、症状となって現れると考えられているが、NF-kBはこの閾値の決定機構に重要な役目を果たすことが明らかになった。特に、細胞核内に存在するNF-kB量とDNAの状態がNF-kBが結合しやすいかどうかによって、この制御が決定される。特に、アトピー性皮膚炎などにおいては、細菌の感染などを防ぎ、NF-kBの核内量を減らすことが重要になる。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (85 results)

All 2022 2021 2020 2019 2018 2017 Other

All Int'l Joint Research (10 results) Journal Article (17 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 17 results,  Open Access: 15 results) Presentation (52 results) (of which Int'l Joint Research: 20 results,  Invited: 18 results) Book (1 results) Remarks (4 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] UCLA(米国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] シカゴ大学(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] 中央研究院(中国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] シカゴ大学(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] 中央研究院(中国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] インペリアル・カレッジ・ロンドン(英国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] 上海中国科学院(CAS)(中国)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] メキシコ国立大学(メキシコ)

    • Related Report
      2018 Annual Research Report
  • [Int'l Joint Research] シカゴ大学(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] インペリアル・カレッジ・ロンドン(英国)

    • Related Report
      2017 Annual Research Report
  • [Journal Article] A text-based computational framework for patient-specific modeling for classification of cancers2022

    • Author(s)
      Hiroaki Imoto, Sawa Yamashiro, Mariko Okada
    • Journal Title

      iScience

      Volume: 25 Issue: 3 Pages: 103944-103944

    • DOI

      10.1016/j.isci.2022.103944

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Systems approaches to investigate the role of NF-κB signaling in aging2022

    • Author(s)
      Masatoshi Haga, Mariko Okada
    • Journal Title

      Biochemical Journal

      Volume: 479 Issue: 2 Pages: 161-183

    • DOI

      10.1042/bcj20210547

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] IκBα is required for full transcriptional induction of some NFκB-regulated genes in response to TNF in MCF-7 cells2021

    • Author(s)
      Minami Ando, Shigeyuki Magi, Masahide Seki, Yutaka Suzuki, Takeya Kasukawa, Diane Lefaudeux, Alexander Hoffmann, Mariko Okada
    • Journal Title

      NPJ systems biology and applications

      Volume: 7 Issue: 1 Pages: 1-15

    • DOI

      10.1038/s41540-021-00204-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cell Shape‐Based Chemical Screening Reveals an Epigenetic Network Mediated by Focal Adhesions2021

    • Author(s)
      Kanazawa Tomomi、Michida Hiroki、Uchino Yuki、Ishihara Akari、Zhang Suxiang、Tabata Sho、Suzuki Yutaka、Imamoto Akira、Okada Mariko
    • Journal Title

      The FEBS Journal

      Volume: - Issue: 19 Pages: 5613-5628

    • DOI

      10.1111/febs.15840

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Reengineering protein-phosphorylation switches2021

    • Author(s)
      Boris N Kholodenko, Mariko Okada
    • Journal Title

      Science

      Volume: 373 Issue: 6550 Pages: 25-26

    • DOI

      10.1126/science.abj5028

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Building patient‐specific models for receptor tyrosine kinase signaling networks2021

    • Author(s)
      Ebata Kyoichi、Yamashiro Sawa、Iida Keita、Okada Mariko
    • Journal Title

      The FEBS Journal

      Volume: - Issue: 1 Pages: 90-101

    • DOI

      10.1111/febs.15831

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mathematical Modeling and Transcriptome Profiling of Breast Cancer Cells During Tamoxifen Treatment Reveal Multiple Trajectories for Resistant Subtypes2021

    • Author(s)
      Magi Shigeyuki、Ki Sewon、Ukai Masao、Naito Atsuhiko、Suzuki Yutaka、Okada Mariko
    • Journal Title

      Research Square

      Volume: -

    • DOI

      10.21203/rs.3.rs-136924/v1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Number of Transcription Factors at an Enhancer Determines Switch-like Gene Expression2020

    • Author(s)
      Michida Hiroki、Imoto Hiroaki、Shinohara Hisaaki、Yumoto Noriko、Seki Masahide、Umeda Mana、Hayashi Tetsutaro、Nikaido Itoshi、Kasukawa Takeya、Suzuki Yutaka、Okada-Hatakeyama Mariko
    • Journal Title

      Cell Reports

      Volume: 31 Issue: 9 Pages: 107724-107724

    • DOI

      10.1016/j.celrep.2020.107724

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Computational Framework for Prediction and Analysis of Cancer Signaling Dynamics from RNA Sequencing Data?Application to the ErbB Receptor Signaling Pathway2020

    • Author(s)
      Imoto Hiroaki、Zhang Suxiang、Okada Mariko
    • Journal Title

      Cancers

      Volume: 12 Issue: 10 Pages: 2878-2878

    • DOI

      10.3390/cancers12102878

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The number of transcription factors at an enhancer determine switch-like gene expression.2020

    • Author(s)
      Hiroki Michida, Hiroaki Imoto, Hisaaki Shinohara, Noriko Yumoto, Masahide Seki, Mana Umeda, Tetsutaro Hayashi, Itoshi Nikaido, Kasukawa Takeya, Yutaka Suzuki, Mariko Okada-Hatakeyama.
    • Journal Title

      Cell Reports

      Volume: -

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Computational prediction of the signal-dependent gene expression dynamics by integrating bioinformatics and modeling approaches.2020

    • Author(s)
      Sufeng Chiang, Jia-Hsin Huang, Huai-Kuang Tsai, Mariko Okada.
    • Journal Title

      FEBS Letter

      Volume: - Issue: 10 Pages: 1477-1496

    • DOI

      10.1002/1873-3468.13757

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Essential role of the Crk family-dosage in DiGeorge-like anomaly and metabolic homeostasis.2020

    • Author(s)
      Akira Imamoto, Sewon Ki, Leiming Li, Kazunari Iwamoto, Venkat Maruthamuthu, John Devany, Ocean Lu, Tomomi Kanazawa, Suxiang Zhang, Takuji Yamada, Akiyoshi Hirayama, Shinji Fukuda, Yutaka Suzuki, Mariko Okada
    • Journal Title

      Life Science Alliance

      Volume: - Issue: 2 Pages: e201900635-e201900635

    • DOI

      10.26508/lsa.201900635

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Postnatal liver functional maturation requires Cnot complex-mediated decay of mRNAs encoding cell cycle and immature liver genes2019

    • Author(s)
      Suzuki Toru、Kikuguchi Chisato、Nishijima Saori、Nagashima Takeshi、Takahashi Akinori、Okada Mariko、Yamamoto Tadashi
    • Journal Title

      Development

      Volume: 146 Issue: 4

    • DOI

      10.1242/dev.168146

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pulmonary phagocyte-derived NPY controls the pathology of severe influenza virus infection2019

    • Author(s)
      Seiki Fujiwara, Midori Hoshizaki, Yu Ichida, Dennis Lex, Etsushi Kuroda, Ken Ishii, Shigeyuki Magi, Mariko Okada, Hiroyuki Takao, Masahiro Gandou, Hirotaka Imai, Ryujiro Hara, Herbert Herzog, Akihiko Yoshimura, Hitoshi Okamura, Josef Penninger, Arthur Slutsky, Stefan Uhlig, Keiji Kuba, and Yumiko Imai
    • Journal Title

      Nature Microbiology

      Volume: 4 Pages: 258-268

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Hunt for the tipping point during endocrine resistance process in breast cancer by dynamic network biomarkers2018

    • Author(s)
      Rui Liu, Jinzeng Wang, Masao Ukai, Ki Sewon, Pei Chen, Yutaka Suzuki, Haiyun Wang, Kazuyuki Aihara, Mariko Okada-Hatakeyama, Luonan Chen
    • Journal Title

      Journal of Molecular Cell Biology

      Volume: - Issue: 8 Pages: 1-16

    • DOI

      10.1093/jmcb/mjy059

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Tamoxifen mechanically reprograms the tumor microenvironment via HIF‐1A and reduces cancer cell survival2018

    • Author(s)
      Cortes Ernesto、Lachowski Dariusz、Robinson Benjamin、Sarper Muge、Teppo Jaakko S、Thorpe Stephen D、Lieberthal Tyler J、Iwamoto Kazunari、Lee David A、Okada‐Hatakeyama Mariko、Varjosalo Markku T、del R?o Hern?ndez Armando E
    • Journal Title

      EMBO reports

      Volume: 20 Issue: 1

    • DOI

      10.15252/embr.201846557

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] [Regular Paper] Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data2018

    • Author(s)
      Kimura Shuhei、Tokuhisa Masato、Okada-Hatakeyama Mariko
    • Journal Title

      Proc. of the 18th IEEE International Conference on Bioinformatics and Bioengineering

      Volume: - Pages: 98-103

    • DOI

      10.1109/bibe.2018.00026

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Stratification of cancer patients based on the signaling dynamics.2022

    • Author(s)
      Mariko Okada
    • Organizer
      International Symposium on Evolutionary Genomics and Bioinformatics 2022. Co-hosted with the Institute for Protein Research (IPR) , Osaka University
    • Related Report
      2021 Annual Research Report
  • [Presentation] A computational platform for mathematical modeling of cancer networks2021

    • Author(s)
      Mariko Okada
    • Organizer
      The international Chemical Congress of Pacific Basin
    • Related Report
      2021 Annual Research Report
  • [Presentation] 個別化医療に向けた臨床オミクスデータの数理モデルへの適用2021

    • Author(s)
      岡田 眞里子
    • Organizer
      第47回東北眼疾患病態研究会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 細胞シミュレーションによる患者固有モデルの構築2021

    • Author(s)
      岡田 眞里子
    • Organizer
      大阪大学 数理・データ科学教育研究センター主催 講演会 「医学研究における数理的方法」
    • Related Report
      2020 Annual Research Report
  • [Presentation] Prediction and validation of NF-kB mediated gene expression mechanisms in B cells using bulk and single cell sequencing data2020

    • Author(s)
      Mariko Okada
    • Organizer
      8th Annual Meeting of the International Cytokine & Interferon Society
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Reclassification of cancer subtypes based on the dynamic cell behaviors2020

    • Author(s)
      Mariko Okada
    • Organizer
      The 1st International Symposium on Human InformatiX
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Quantitative analysis of immune response using Omics and imaging2019

    • Author(s)
      Mariko Okada
    • Organizer
      1st International Symposium on Inflammation Cellular Society
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Analyze immune response using Omics and imaging2019

    • Author(s)
      Mariko Okada
    • Organizer
      The 3rd International Symposium for Trans-Omics
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Quantitative analysis of biological networks using mathematical models2019

    • Author(s)
      Mariko Okada
    • Organizer
      The 9th International Congress on Industrial and Applied Mathematics (ICIAM 2019) The CJK-SIAMs joint mini-symposium on Mathematical Biology
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cooperative mechanism in epigenetic network controls gene expression quantity2019

    • Author(s)
      Mariko Okada
    • Organizer
      Bioinformatics Seminar, Academia Sinica, Taiwan
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 細胞制御メカニズム理解のための数理モデル構築とツール開発2019

    • Author(s)
      岡田眞里子
    • Organizer
      第16回 生物数学の理論とその応用ー生命現象の定量的理解に向けてー
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Model-based understanding of cell proliferation2019

    • Author(s)
      Mariko Okada
    • Organizer
      The 42nd Annual Meeting of the Molecular Biology Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Analyze Omics data using kinetic model2019

    • Author(s)
      Mariko Okada
    • Organizer
      The 57th Annual Meeting of the Biophysical Society of Japan
    • Related Report
      2019 Annual Research Report
  • [Presentation] Quantitative evaluation of kinase activities and transcriptional regulation using mathematical model2019

    • Author(s)
      岡田 眞里子
    • Organizer
      第92回日本薬理学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Modeling and Omics analysis of NF-kB system2018

    • Author(s)
      Mariko Okada
    • Organizer
      'IPR Seminar "BioNetworks in Health and Diseases"
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞ネットワークの数理モデリングと疾患研究への応用2018

    • Author(s)
      岡田 眞里子
    • Organizer
      公開シンポジウム「医療情報分析の実際」
    • Related Report
      2018 Annual Research Report
  • [Presentation] Integrative analysis to reveal transcriptional regulation of NF-kB2018

    • Author(s)
      Mariko Okada
    • Organizer
      IMS-JSI International Symposium on Immunology 2018 "Checkpoint in medical science and its technology
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 炎症疾患の代謝アダプテーション2018

    • Author(s)
      岡田 眞里子
    • Organizer
      新学術研究「代謝オミクス」第2回 領域会議
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Modeling of signal-transcriptional network2018

    • Author(s)
      Mariko Okada
    • Organizer
      18th World Congress of Basic and Clinical Pharmacology (WCP2018 Kyoto)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Quantitative transcriptional control of NF-kB2018

    • Author(s)
      Mariko Okada
    • Organizer
      ISMB 2018, Chicago
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Data-driven modelling of cellular network2018

    • Author(s)
      Mariko Okada
    • Organizer
      The 2018 International Conference on Computational Systems B Biology (ISB 2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biological significance of the oscillatory dynamics of NF-kB for target gene expression2018

    • Author(s)
      Minami Ando, Shigeyuki Magi, Kazunari Iwamoto, Mariko Okada
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Model-based prediction of ErbB signaling activities on cell cycle entry2018

    • Author(s)
      Hiroaki Imoto, Kazunari Iwamoto, Shigeyuki Magi, Suxiang Zhang, Mariko Okada
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Experimental Validation of a Mathematical Model of ErbB Receptor Signaling to Cell Cycle2018

    • Author(s)
      Kyoichi Ebata, Hiroaki Imoto, Kazunari Iwamoto, Shigeyuki Magi, Suxiang Zhang, Mariko Okada-Hatakeyama
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Investigation of the crosstalk mechanism between two damped oscillators, NF-kB and p38 MAP kinase2018

    • Author(s)
      Hiroki Michida, Minami Ando, Kazunari Iwamoto, Shigeyuki Magi, Mariko Okada
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Understanding biological systems from multi-order kinetics2018

    • Author(s)
      Mariko Okada
    • Organizer
      第91回日本生化学会大会「多次元速度論からの生物の理解」
    • Related Report
      2018 Annual Research Report
  • [Presentation] Biological significance of the oscillatory dynamics of NF-kB for target gene expression2018

    • Author(s)
      Minami Ando, Shigeyuki Magi, Kazunari Iwamoto, Mariko Okada
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Predictions of cellular responses with a mathematical model integrating ErbB signaling and cell cycle2018

    • Author(s)
      Hiroaki Imoto, Kazunari Iwamoto, Shigeyuki Magi, Suxiang Zhang, Mariko Okada
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Crk遺伝子ファミリーによる細胞機能制御の統合的解析2018

    • Author(s)
      金沢 朋実, 岩本 一成, 間木 重行, 張 素香, 今本 公, 岡田 眞里子
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Time-sries analysis on the process of acquiring tamoxifen resistance in breast cancer cells2018

    • Author(s)
      Shigeyuki Magi, Yutaka Suzuki, Mariko Okada
    • Organizer
      第77回日本癌学会学術総会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Quantitative analysis of transcriptional regulation2018

    • Author(s)
      Mariko Okada
    • Organizer
      Seminar at Chinese Academy of Sciences, Shanghai
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Quantitative Transcription Control Mediated by Signaling Network2018

    • Author(s)
      Mariko Okada
    • Organizer
      The 19th International Conference on Systems Biology (ICSB 2018)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Dynamics and regulatory principles of biological networks2018

    • Author(s)
      Mariko Okada
    • Organizer
      蛋白研60週年記念講演会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 細胞システム解析の考え方と基礎・応用2018

    • Author(s)
      岡田 眞里子
    • Organizer
      第16回日本糖鎖科学コンソーシアム シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 乳がんのタモキシフェン耐性獲得過程の時系列解析2018

    • Author(s)
      間木 重行, 奇 世媛, 鵜飼 正雄, 鈴木 穣, 岡田 眞里子
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] NF-kB - p38 MAPK crosstalk mechanism regulating gene expression dynamics2018

    • Author(s)
      Hiroki Michida, Minami Ando, Shigeyuki Magi, Mariko Okada
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Signal-dependent transcriptional regulation for cell fate control2018

    • Author(s)
      Mariko Okada
    • Organizer
      3rd Symposium on Complex Biodynamics & Networks
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Time-series analysis on the process of acquiring resistance for estrogen receptor antagonist in breast cancer cells2018

    • Author(s)
      Shigeyuki Magi, Sewon Ki, Masao Ukai, Yutaka Suzuki, Mariko Okada
    • Organizer
      3rd Symposium on Complex Biodynamics & Networks
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] An input-output relationship of signaling-epigenetic regulation. Symposium on Chromosome Biology and Cell Signalling.2018

    • Author(s)
      Mariko Okada
    • Organizer
      Joint IPR Seminar by IISER TVM and Osaka Univ.
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Systems biology of signaling network2018

    • Author(s)
      Mariko Okada
    • Organizer
      Seminar at Centre for Molecular Medicine, Jawaharlal Nehru University
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Trans-Omics analysis of NF-kappaB regulation2017

    • Author(s)
      Mariko Okada
    • Organizer
      CREST & Scientific Research on Innovative Areas Symposium. “The 1st International Symposium for Trans-Omics”
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Mathematical modeling of cancer signaling network.2017

    • Author(s)
      Mariko Okada
    • Organizer
      The Third Trilateral Workshop for Frontier Protein Studies 2017
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of Omics data using kinetic model2017

    • Author(s)
      Mariko Okada
    • Organizer
      Seminar at Dept. of Bioengineering, Imperial College London
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] オミクスと数理モデリングによる細胞制御機構の解明2017

    • Author(s)
      岡田眞里子
    • Organizer
      23th Cardiovascular Metabolism and Aging Conference
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 細胞モデリングとAI - オミクス研究から実用的システム生物学の構築へ-2017

    • Author(s)
      岡田眞里子
    • Organizer
      ConBio2017
    • Related Report
      2017 Annual Research Report
  • [Presentation] Classic yet unique dynamic properties of NF-kappaB gene regulation2017

    • Author(s)
      岡田眞里子
    • Organizer
      OIST-JST Joint Seminar
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 細胞の形態と代謝ネットワーク2017

    • Author(s)
      岡田眞里子
    • Organizer
      第11回メタボロームシンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] システムバイオロジーとバイオデータベース2017

    • Author(s)
      岡田眞里子
    • Organizer
      NBDCワークショップ
    • Related Report
      2017 Annual Research Report
  • [Presentation] 細胞形態と代謝を繋ぐシグナル軸の同定.2017

    • Author(s)
      岡田眞里子
    • Organizer
      アステラス病態代謝研究会 平成29年度研究報告会
    • Related Report
      2017 Annual Research Report
  • [Presentation] NF-kappaB転写因子の動態と機能2017

    • Author(s)
      岡田眞里子
    • Organizer
      九州大学生体防御制御研究所セミナー
    • Related Report
      2017 Annual Research Report
  • [Presentation] シグナル伝達の数理モデル化と細胞変換2017

    • Author(s)
      岡田眞里子
    • Organizer
      新学術領域「数理シグナル」第1回若手ワークショップ
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] システムバイオロジーと創薬2017

    • Author(s)
      岡田眞里子
    • Organizer
      バイオグリッド研究会2017 ~AI、シミュレーション、システムバイオロジーと創薬~
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Book] Quantitative imaging analysis of NF-κB for mathematical modelling applications. Computational Modeling of Signaling Networks (Edited by Lan Nguyen).2020

    • Author(s)
      Johannes Nicolaus Wibisana, Takehiko Inaba, Yasushi Sako, Mariko Okada
    • Publisher
      Methods in Molecular Biology, Springer Nature.
    • Related Report
      2020 Annual Research Report
  • [Remarks] 大阪大学 細胞システム研究室

    • URL

      http://www.protein.osaka-u.ac.jp/cell_systems/index_ja.html

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report 2019 Annual Research Report
  • [Remarks] 患者固有モデルpasmopy

    • URL

      https://github.com/okadalabipr/pasmopy

    • Related Report
      2021 Annual Research Report
  • [Remarks] 大阪大学 蛋白質研究所 細胞システム研究室

    • URL

      http://www.protein.osaka-u.ac.jp/cell_systems/index.html

    • Related Report
      2018 Annual Research Report
  • [Remarks] 大阪大学 蛋白質研究所 細胞システム研究室

    • URL

      http://www.protein.osaka-u.ac.jp/cell_systems/

    • Related Report
      2017 Annual Research Report
  • [Patent(Industrial Property Rights)] 腫瘍のサブタイプ決定方法及びその応用、並びにサブタイプ決定のための方法2021

    • Inventor(s)
      井元宏明、山城紗和、岡田眞里子
    • Industrial Property Rights Holder
      井元宏明、山城紗和、岡田眞里子
    • Industrial Property Rights Type
      特許
    • Filing Date
      2021
    • Related Report
      2021 Annual Research Report

URL: 

Published: 2017-07-04   Modified: 2023-01-30  

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