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Understanding of chemical communications and higher-order functional evaluation of bioactive ligands by spatiotemporal analysis

Planned Research

Project AreaFrontier research of chemical communications
Project/Area Number 17H06409
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionOsaka University

Principal Investigator

Kikuchi Kazuya  大阪大学, 工学研究科, 教授 (70292951)

Project Period (FY) 2017-06-30 – 2022-03-31
Project Status Completed (Fiscal Year 2021)
Budget Amount *help
¥90,350,000 (Direct Cost: ¥69,500,000、Indirect Cost: ¥20,850,000)
Fiscal Year 2021: ¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2020: ¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2019: ¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2018: ¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2017: ¥16,510,000 (Direct Cost: ¥12,700,000、Indirect Cost: ¥3,810,000)
Keywords化学プローブ / in vivoイメージング / 破骨細胞 / DNAメチル化 / 蛋白質分解 / 蛍光イメージング / 蛋白質ラベル化 / 内在性膜蛋白質 / イメージング / 時空間解析 / 内在性膜タンパク質 / 生理活性リガンド / 生細胞イメージング
Outline of Final Research Achievements

In this study, we developed chemical imaging probes for spatiotemporal analysis of the function of biomolecules and bioactive ligands in living cells and animals. We developed pH-responsive fluorescent probes that can be delivered to bone tissue for detecting osteoclast and osteocyte activity in living mice. We also evaluated the drug action on these cell activities. In addition, we developed small molecule-protein hybrid probes for visualization of important processes such as DNA methylation, endogenous membrane protein expression, and protein degradation in living cells.

Academic Significance and Societal Importance of the Research Achievements

本研究で開発した化学プローブを利用したこれらの技術は生理活性リガンドが生きた細胞、個体においていつ、どこで対象分子や細胞に作用するのかを直接イメージング解析できる新たな評価法として期待できる。破骨細胞、骨細胞の活性法は骨粗鬆症や関節リウマチの発症に、またDNAメチル化や蛋白質分解はがんの病態と関連しているため、本評価法によってこれらの疾患の治療薬のスクリーニングや作用機序解析に貢献できることが考えられる。

Report

(6 results)
  • 2021 Annual Research Report   Final Research Report ( PDF )
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • 2017 Annual Research Report
  • Research Products

    (42 results)

All 2022 2021 2020 2019 2018

All Journal Article (27 results) (of which Int'l Joint Research: 10 results,  Peer Reviewed: 27 results,  Open Access: 14 results) Presentation (12 results) (of which Int'l Joint Research: 10 results,  Invited: 12 results) Book (2 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] カテプシン K 活性の検出を目指した Off-On スイッチング 19F MRI ナノプローブの開発2022

    • Author(s)
      小西祐輝、杉原文徳、蓑島維文、菊地和也
    • Journal Title

      日本分子イメージング学会機関誌(JSMI Report)

      Volume: 15 Pages: 29-33

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cardioluminescence in Transgenic Zebrafish Larvae: A Calcium Imaging Tool to Study Drug Effects and Pathological Modeling2021

    • Author(s)
      Vicente Manuel、Salgado-Almario Jussep、Collins Michelle M.、Martinez-Sielva Antonio、Minoshima Masafumi、Kikuchi Kazuya、Domingo Beatriz、Llopis Juan
    • Journal Title

      Biomedicines

      Volume: 9 Issue: 10 Pages: 1294-1294

    • DOI

      10.3390/biomedicines9101294

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Anti-Siglec-15 antibody suppresses bone resorption by inhibiting osteoclast multinucleation without attenuating bone formation2021

    • Author(s)
      Tsukazaki Hiroyuki、Kikuta Junichi、Ao Tomoka、Morimoto Akito、Fukuda Chie、Tsuda Eisuke、Minoshima Masafumi、Kikuchi Kazuya、Kaito Takashi、Ishii Masaru
    • Journal Title

      Bone

      Volume: 152 Pages: 116095-116095

    • DOI

      10.1016/j.bone.2021.116095

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of Off-On Switching 19F MRI Probes for Cathepsin K Activity Detection2021

    • Author(s)
      Konishi Yuki、Okunishi Atsuya、Sugihara Fuminori、Nakamura Tatsuya、Akazawa Kazuki、Minoshima Masafumi、Kikuchi Kazuya
    • Journal Title

      Bulletin of the Chemical Society of Japan

      Volume: 94 Issue: 6 Pages: 1690-1694

    • DOI

      10.1246/bcsj.20210099

    • NAID

      130008066557

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Near-infrared fluorescent probes: a next-generation tool for protein-labeling applications2021

    • Author(s)
      Reja Shahi Imam、Minoshima Masafumi、Hori Yuichiro、Kikuchi Kazuya
    • Journal Title

      Chemical Science

      Volume: 12 Issue: 10 Pages: 3437-3447

    • DOI

      10.1039/d0sc04792a

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Optical Manipulation of Subcellular Protein Translocation Using a Photoactivatable Covalent Labeling System2021

    • Author(s)
      Kowada Toshiyuki、Arai Keisuke、Yoshimura Akimasa、Matsui Toshitaka、Kikuchi Kazuya、Mizukami Shin
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 60 Issue: 20 Pages: 11378-11383

    • DOI

      10.1002/anie.202016684

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fluorogenic probes for detecting deacylase and demethylase activity towards post-translationally-modified lysine residues2021

    • Author(s)
      Hori Yuichiro、Nishiura Miyako、Tao Tomomi、Baba Reisuke、Bull Steven D.、Kikuchi Kazuya
    • Journal Title

      Chemical Science

      Volume: 12 Issue: 7 Pages: 2498-2503

    • DOI

      10.1039/d0sc06551j

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A step towards gadolinium-free bioresponsive MRI contrast agent2021

    • Author(s)
      Wyskocka-Gajda Marzena、Przypis Lukasz、Olesiejuk Monika、Krawczyk Tomasz、Kuznik Anna、Nawara Krzysztof、Minoshima Masafumi、Sugihara Fuminori、Kikuchi Kazuya、Kuznik Nikodem
    • Journal Title

      European Journal of Medicinal Chemistry

      Volume: 211 Pages: 113086-113086

    • DOI

      10.1016/j.ejmech.2020.113086

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Single-cell dynamics of pannexin-1-facilitated programmed ATP loss during apoptosis2020

    • Author(s)
      Imamura Hiromi、Sakamoto Shuichiro、Yoshida Tomoki、Matsui Yusuke、Penuela Silvia、Laird Dale W、Mizukami Shin、Kikuchi Kazuya、Kakizuka Akira
    • Journal Title

      eLife

      Volume: 9

    • DOI

      10.7554/elife.61960

    • NAID

      120006893984

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] An Acid‐Activatable Fluorescence Probe for Imaging Osteocytic Bone Resorption Activity in Deep Bone Cavities2020

    • Author(s)
      Hashimoto Ryu、Minoshima Masafumi、Kikuta Junichi、Yari Shinya、Bull Steven D.、Ishii Masaru、Kikuchi Kazuya
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 59 Issue: 47 Pages: 20996-21000

    • DOI

      10.1002/anie.202006388

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A Photodeactivatable Antagonist for Controlling CREB-Dependent Gene Expression2020

    • Author(s)
      Imoto Takuma、Minoshima Masafumi、Yokoyama Tatsushi、Emery Ben P.、Bull Steven D.、Bito Haruhiko、Kikuchi Kazuya
    • Journal Title

      ACS Central Science

      Volume: 6 Issue: 10 Pages: 1813-1818

    • DOI

      10.1021/acscentsci.0c00736

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Oxygen Functional Groups on MWCNT Surface as Critical Factor Boosting T2 Relaxation Rate of Water Protons: Towards Improved CNT-Based Contrast Agents2020

    • Author(s)
      Tomczyk Mateusz Michal、Boncel Slawomir、Herman Artur、Krawczyk Tomasz、Jakobik-Kolon Agata、Pawlyta Miroslawa、Krzywiecki Maciej、Chrobak Artur、Minoshima Masafumi、Sugihara Fuminori、Kikuchi Kazuya、Kuznik Nikodem
    • Journal Title

      International Journal of Nanomedicine

      Volume: 15 Pages: 7433-7450

    • DOI

      10.2147/ijn.s257230

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Rapid no-wash labeling of PYP-tag proteins with reactive fluorogenic ligands affords stable fluorescent protein conjugates for long-term cell imaging studies2020

    • Author(s)
      Kumar N, Hori, Y. Nishiura M, Kikuchi K
    • Journal Title

      Chem Sci

      Volume: 11 Issue: 14 Pages: 3694-3701

    • DOI

      10.1039/d0sc00499e

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Development of photoswitchable fluorescent molecules using arylazopyrazole2020

    • Author(s)
      Torii K, Hori Y, Watabe K, Kikuchi K
    • Journal Title

      Bull Chem Soc Jpn.

      Volume: - Issue: 7 Pages: 821-824

    • DOI

      10.1246/bcsj.20200077

    • NAID

      130007879560

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Live-Cell Imaging of Protein Degradation Utilizing Designed Protein-Tag Mutant and Fluorescent Probe with Turn-Off Switch2020

    • Author(s)
      Gao J, Hori Y, Takeuchi O, Kikuchi K
    • Journal Title

      Bioconjug Chem

      Volume: 31 Issue: 3 Pages: 577-583

    • DOI

      10.1021/acs.bioconjchem.9b00696

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sensing Peroxynitrite in Different Organelles of Murine RAW264.7 Macrophages With Coumarin-Based Fluorescent Probes2020

    • Author(s)
      Weber Maria、Yamada Namiko、Tian Xue、Bull Steven D.、Minoshima Masafumi、Kikuchi Kazuya、Mackenzie Amanda B.、James Tony D.
    • Journal Title

      Frontiers in Chemistry

      Volume: 8 Pages: 39-39

    • DOI

      10.3389/fchem.2020.00039

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Engineered Protein-tag for Rapid Live-cell Fluorogenic Visualization of Proteins by Anionic Probes2020

    • Author(s)
      Gao J, Hori Y, Nishiura M, Bordy M, Hasserodt J, Kikuchi K
    • Journal Title

      Chem Lett

      Volume: 49 Issue: 3 Pages: 232-235

    • DOI

      10.1246/cl.190875

    • NAID

      130007805930

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of Fluorogenic Probes for Rapid High-Contrast Imaging of Transient Nuclear Localization of Sirtuin 32020

    • Author(s)
      Gao J, Hori Y, Shimomura T, Bordy M, Hasserodt J, Kikuchi K
    • Journal Title

      Chembiochem

      Volume: 21 Issue: 5 Pages: 656-662

    • DOI

      10.1002/cbic.201900568

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Photolytic Release of a Caged Inhibitor of an Endogenous Transcription Factor Enables Optochemical Control of CREB-Mediated Gene Expression2019

    • Author(s)
      Imoto Takuma、Kawase Akihiro、Minoshima Masafumi、Yokoyama Tatsushi、Bito Haruhiko、Kikuchi Kazuya
    • Journal Title

      Organic Letters

      Volume: 22 Issue: 1 Pages: 22-25

    • DOI

      10.1021/acs.orglett.9b03568

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Improvement in Photostability of Fluorescein by Lanthanide Ions Based on Energy Transfer-based Triplet State Quenching2019

    • Author(s)
      Imoto Takuma、Muramatsu Masayasu、Miyasaka Hiroshi、Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Chemistry Letters

      Volume: 48 Issue: 10 Pages: 1181-1184

    • DOI

      10.1246/cl.190469

    • NAID

      130007724070

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In Vivo Multicolor Imaging with Fluorescent Probes Revealed the Dynamics and Function of Osteoclast Proton Pumps2019

    • Author(s)
      Minoshima Masafumi、Kikuta Junichi、Omori Yuta、Seno Shigeto、Suehara Riko、Maeda Hiroki、Matsuda Hideo、Ishii Masaru、Kikuchi Kazuya
    • Journal Title

      ACS Central Science

      Volume: 5 Issue: 6 Pages: 1059-1066

    • DOI

      10.1021/acscentsci.9b00220

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chemical Tools with Fluorescence Switches for Verifying Epigenetic Modifications2019

    • Author(s)
      Hori Y, Kikuchi K
    • Journal Title

      Acc Chem Res

      Volume: 52 Issue: 10 Pages: 2849-2857

    • DOI

      10.1021/acs.accounts.9b00349

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Highly Sensitive Detection of Caspase-3/7 Activity in Living Mice Using Enzyme-Responsive 19F MRI Nanoprobes2018

    • Author(s)
      Akazawa Kazuki、Sugihara Fuminori、Nakamura Tatsuya、Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Bioconjugate Chemistry

      Volume: 29 Issue: 5 Pages: 1720-1728

    • DOI

      10.1021/acs.bioconjchem.8b00167

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Sensing caspase-1 activity using activatable 19F MRI nanoprobes with improved turn-on kinetics2018

    • Author(s)
      Akazawa Kazuki、Sugihara Fuminori、Minoshima Masafumi、Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Chemical Communications

      Volume: 54 Issue: 83 Pages: 11785-11788

    • DOI

      10.1039/c8cc05381b

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Perfluorocarbon-based 19F MRI Nanoprobes for In Vivo Multicolor Imaging2018

    • Author(s)
      Akazawa Kazuki、Sugihara Fuminori、Nakamura Tatsuya、Matsushita Hisashi, Mukai Hiroaki, Akimoto Rena, Minoshima Masafumi, Mizukami Shin、Kikuchi Kazuya
    • Journal Title

      Angewante Chemie International Edition

      Volume: 57 Pages: 16742-16747

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] In vivo visualisation of different modes of action of biologic DMARDs inhibiting osteoclastic bone resorption2018

    • Author(s)
      Matsuura Y, Kikuta J, Kishi Y, Hasegawa T, Okuzaki D, Hirano T, Minoshima M, Kikuchi K, Kumanogoh A, Ishii M
    • Journal Title

      Annals of the Rheumatic Diseases

      Volume: 印刷中 Issue: 8 Pages: 1219-1225

    • DOI

      10.1136/annrheumdis-2017-212880

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Dynamic Analyses of the Short-Term Effects of Different Bisphosphonates Using Intravital Two-Photon Microscopy2018

    • Author(s)
      Kikuta Junichi、Shirazaki Mai、Sudo Takao、Mizuno Hiroki、Morimoto Akito、Suehara Riko、Minoshima Masafumi、Kikuchi Kazuya、Ishii Masaru
    • Journal Title

      JBMR Plus

      Volume: 2 Issue: 6 Pages: 362-366

    • DOI

      10.1002/jbm4.10057

    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Nano-particle based 19F MRI contrast agent with tunable chemical switches2021

    • Author(s)
      Kazuya Kikuchi
    • Organizer
      Pacifichem 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] in vivo Imaging Probes to Clarify Cellular and Molecular Functions2020

    • Author(s)
      Kazuya Kikuchi
    • Organizer
      RSC Tokyo International Conferences 2020
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] New Biological Findings which were Revealed by Designed Fluorescent Probes2019

    • Author(s)
      Kazuya Kikuchi
    • Organizer
      Chemical Biology & Physiology Conference 2019
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In vivo Multicolor Imaging with Fluorescent Probes Revealed Dynamics and Function of Osteoclast Proton Pumps2019

    • Author(s)
      Kazuya Kikuchi
    • Organizer
      16th International, Methods & Applications of Fluorescence (Roger Y Tsien Memorial Symposium)
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] in vivo Chemical Probes for MRI and Fluorescence Imaging2019

    • Author(s)
      Kazuya Kikuchi
    • Organizer
      ICBIC-19, International Conference on Biological Inorganic Chemistry
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Development of Multifunctional 19F MRI Contrast Agents Based on Fluorine-encapsulated Silica Nanoparticle2019

    • Author(s)
      Kazuya Kikuchi
    • Organizer
      The Future of Molecular MR: A Cellular and Molecular Imaging Workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 化学プローブによって明らかになった生命現象2019

    • Author(s)
      菊地和也
    • Organizer
      日本分析化学会第68年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] イメージングプローブのデザイン・合成によるケミカルバイオロジー研究2019

    • Author(s)
      菊地和也
    • Organizer
      第19回日本蛋白質科学会年会 第71回日本細胞生物学会大会 合同年次学会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] New Biological Findings Which Were Revealed by Designed Chemical Probes2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      A3 Meeting for Chemical Biology
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] In vivo Chemical Probes for MRI and Fluorescence Imaging2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      The 9th Asian Biological Inorganic Chemistry Conference (AsBIC IX)
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Development of Multifunctional 19F MRI Contrast Agents Based on Fluorine-encapsulated Silica Nanoparticle2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      Imaging in 2020
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] New Biological Findings Which Were Clarified by Designed Chemical Probes2018

    • Author(s)
      Kikuchi Kazuya
    • Organizer
      MSMLG 2018, 6th International Conference on Molecular Sensors and Molecular Logic Gates
    • Related Report
      2018 Annual Research Report 2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Book] 先端の分析法 第2版(原理編第3章プローブ, MRIプローブ)2022

    • Author(s)
      蓑島維文、菊地和也
    • Total Pages
      1072
    • Publisher
      エヌ・ティー・エス
    • ISBN
      9784860437374
    • Related Report
      2021 Annual Research Report
  • [Book] 核酸科学ハンドブック(第5章2 MRIプローブ)2020

    • Author(s)
      蓑島維文、菊地和也
    • Total Pages
      576
    • Publisher
      講談社
    • ISBN
      9784065207864
    • Related Report
      2020 Annual Research Report
  • [Patent(Industrial Property Rights)] ケージド化合物から化合物を放出させる方法2021

    • Inventor(s)
      蓑島維文、橋本 龍、菊地和也
    • Industrial Property Rights Holder
      蓑島維文、橋本 龍、菊地和也
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2021-022014
    • Filing Date
      2021
    • Related Report
      2020 Annual Research Report

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Published: 2017-07-04   Modified: 2023-01-30  

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