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Creation of Biomolecular Engines: Engineering Naturally Occurring Biomolecules and Designing from Scratch

Planned Research

Project AreaMolecular Engine: Design of Autonomous Functions through Energy Conversion
Project/Area Number 18H05420
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionNational Institute of Information and Communications Technology

Principal Investigator

Furuta Ken'ya  国立研究開発法人情報通信研究機構, 未来ICT研究所神戸フロンティア研究センター, 研究マネージャー (40571831)

Co-Investigator(Kenkyū-buntansha) 古賀 信康  大阪大学, 蛋白質研究所, 教授 (50432571)
小杉 貴洋  分子科学研究所, 協奏分子システム研究センター, 助教 (00771388)
Project Period (FY) 2018-06-29 – 2023-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥187,330,000 (Direct Cost: ¥144,100,000、Indirect Cost: ¥43,230,000)
Fiscal Year 2022: ¥34,580,000 (Direct Cost: ¥26,600,000、Indirect Cost: ¥7,980,000)
Fiscal Year 2021: ¥34,580,000 (Direct Cost: ¥26,600,000、Indirect Cost: ¥7,980,000)
Fiscal Year 2020: ¥34,580,000 (Direct Cost: ¥26,600,000、Indirect Cost: ¥7,980,000)
Fiscal Year 2019: ¥34,580,000 (Direct Cost: ¥26,600,000、Indirect Cost: ¥7,980,000)
Fiscal Year 2018: ¥49,010,000 (Direct Cost: ¥37,700,000、Indirect Cost: ¥11,310,000)
Keywords生物分子モーター / DNAナノテクノロジー / タンパク質デザイン / ATP加水分解酵素
Outline of Final Research Achievements

We have succeeded in the development of a new linear-type biomolecular engine by engineering a naturally occurring motor protein, dynein, and various DNA-binding domains. This allowed us to operate more than two types of motors with distinct recognition sequences on a DNA nanotube, making it possible to create a system capable of automatically sorting and integrating cargoes. Moreover, we have successfully engineered naturally occurring rotational biomolecular engines with novel allosteric sites. These sites, created by restoring a lost function during evolution, made possible of the boost and regulation of the rotation. Toward the design of biomolecular engines from scratch, we have developed methods to create new protein building blocks. Furthermore, we have successfully designed proteins that bind ATP and proteins that self-assemble into symmetric oligomers: dimers, pentamers, and hexamers.

Academic Significance and Societal Importance of the Research Achievements

これまでのDNAナノテクノロジーは応用が期待されていたものの、動的な制御機能や高速な駆動モーターを欠いていたため、実用化への道筋が立っていなかった。本研究は、DNAナノ構造体を直接高速に駆動する分子マシンを創出したことで応用の可能性を飛躍的に高めた。今後、生物で使われているものに匹敵する、あるいは凌駕するようなデバイスの開発など、新しい原理に基づいた産業への道を拓くことが期待される。また生体内で多くのタンパク質は複合体を形成し機能する。本研究のように、タンパク質複合体の機能を制御したり、新規に機能を付与することは、生命現象の理解と制御や、医療を含めた各種産業への貢献につながると考えられる。

Report

(6 results)
  • 2023 Final Research Report ( PDF )
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (129 results)

All 2024 2023 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (1 results) Journal Article (30 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 24 results,  Open Access: 15 results) Presentation (92 results) (of which Int'l Joint Research: 17 results,  Invited: 83 results) Book (6 results)

  • [Int'l Joint Research] University of Washington(米国)

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Design of complicated all-α protein structures2024

    • Author(s)
      Sakuma Koya、Kobayashi Naohiro、Sugiki Toshihiko、Nagashima Toshio、Fujiwara Toshimichi、Suzuki Kano、Kobayashi Naoya、Murata Takeshi、Kosugi Takahiro、Tatsumi-Koga Rie、Koga Nobuyasu
    • Journal Title

      Nature Structural and Molecular Biology

      Volume: 31 Issue: 2 Pages: 275-282

    • DOI

      10.1038/s41594-023-01147-9

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Exploration of novel αβ-protein folds through de novo design2023

    • Author(s)
      Minami Shintaro、Kobayashi Naohiro、Sugiki Toshihiko、Nagashima Toshio、Fujiwara Toshimichi、Tatsumi-Koga Rie、Chikenji George、Koga Nobuyasu
    • Journal Title

      Nature Structural and Molecular Biology

      Volume: 30 Issue: 8 Pages: 1132-1140

    • DOI

      10.1038/s41594-023-01029-0

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Design of allosteric sites into rotary motor V1-ATPase by restoring lost function of pseudo-active sites2023

    • Author(s)
      Kosugi Takahiro、Iida Tatsuya、Tanabe Mikio、Iino Ryota、Koga Nobuyasu
    • Journal Title

      Nature Chemistry

      Volume: 15 Issue: 11 Pages: 1591-1598

    • DOI

      10.1038/s41557-023-01256-4

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Programmable Nanomachines That Move on DNA Nanotube Tracks2023

    • Author(s)
      IBUSUKI Ryota、FURUTA Ken’ya
    • Journal Title

      Seibutsu Butsuri

      Volume: 63 Issue: 2 Pages: 79-85

    • DOI

      10.2142/biophys.63.79

    • ISSN
      0582-4052, 1347-4219
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Making motors work - potential applications in biocomputing and synthetic biology2023

    • Author(s)
      Furuta Ken'ya
    • Journal Title

      Journal of Cell Science

      Volume: 136 Issue: 5

    • DOI

      10.1242/jcs.261035

    • Related Report
      2021 Annual Research Report
    • Open Access
  • [Journal Article] Fast and Easy Transient Mammalian Cell Expression and Purification of Cytoplasmic Dynein2023

    • Author(s)
      Furuta Akane、Furuta Ken’ya
    • Journal Title

      Methods Mol Biol.

      Volume: - Pages: 157-173

    • DOI

      10.1007/978-1-0716-2958-1_10

    • ISBN
      9781071629574, 9781071629581
    • Related Report
      2021 Annual Research Report
  • [Journal Article] Uncovering the design principles of supramolecular assemblies through manipulation of the structures, dynamics, and functions2022

    • Author(s)
      Miyazaki Makito、Kosugi Takahiro
    • Journal Title

      Biophysics and Physicobiology

      Volume: 19 Issue: 0 Pages: n/a

    • DOI

      10.2142/biophysico.bppb-v19.0031

    • ISSN
      2189-4779
    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tackle “Molecular Engine” by early-career researchers2022

    • Author(s)
      Otomo Akihiro、Kosugi Takahiro
    • Journal Title

      Biophysics and Physicobiology

      Volume: 19 Issue: 0 Pages: n/a

    • DOI

      10.2142/biophysico.bppb-v19.0039

    • ISSN
      2189-4779
    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamic Control of Microbial Movement by Photoswitchable ATP Antagonists2022

    • Author(s)
      Sampreeth Thayyil, Yukinori Nishigami, Jahirul Islam, P K Hashim, Ken'ya Furuta, Kazuhiro Oiwa, Jian Yu, Min Yao,Toshiyuki Nakagaki, and Nobuyuki Tamaoki
    • Journal Title

      Chemistry A European Journal

      Volume: 28 Issue: 30

    • DOI

      10.1002/chem.202200807

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Programmable molecular transport achieved by engineering protein motors to move on DNA nanotubes2022

    • Author(s)
      Ibusuki Ryota、Morishita Tatsuya、Furuta Akane、Nakayama Shintaro、Yoshio Maki、Kojima Hiroaki、Oiwa Kazuhiro、Furuta Ken’ya
    • Journal Title

      Science

      Volume: 375 Issue: 6585 Pages: 1159-1164

    • DOI

      10.1126/science.abj5170

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Planar cell polarity induces local microtubule bundling for coordinated ciliary beating2021

    • Author(s)
      Nakayama Shogo、Yano Tomoki、Namba Toshinori、Konishi Satoshi、Takagishi Maki、Herawati Elisa、Nishida Tomoki、Imoto Yasuo、Ishihara Shuji、Takahashi Masahide、Furuta Ken’ya、Oiwa Kazuhiro、Tamura Atsushi、Tsukita Sachiko
    • Journal Title

      Journal of Cell Biology

      Volume: 220 Issue: 7

    • DOI

      10.1083/jcb.202010034

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Role of backbone strain in de novo design of complex α/β protein structures2021

    • Author(s)
      Koga Nobuyasu、Koga Rie、Liu Gaohua、Castellanos Javier、Montelione Gaetano T.、Baker David
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 3921-3921

    • DOI

      10.1038/s41467-021-24050-7

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Positive Charge Introduction on the Surface of Thermostabilized PET Hydrolase Facilitates PET Binding and Degradation2021

    • Author(s)
      Nakamura Akihiko、Kobayashi Naoya、Koga Nobuyasu、Iino Ryota
    • Journal Title

      ACS Catalysis

      Volume: 11 Issue: 14 Pages: 8550-8564

    • DOI

      10.1021/acscatal.1c01204

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Design of complicated all-α protein structures2021

    • Author(s)
      Sakuma Koya、Kobayashi Naohiro、Sugiki Toshihiko、Nagashima Toshio、Fujiwara Toshimichi、Suzuki Kano、Kobayashi Naoya、Murata Takeshi、Kosugi Takahiro、Koga Rie、Koga Nobuyasu
    • Journal Title

      bioRxiv

      Volume: 2021.07.14.449347

    • DOI

      10.1101/2021.07.14.449347

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
  • [Journal Article] Exploration of novel αβ-protein folds through <i>de novo</i> design2021

    • Author(s)
      Minami Shintaro、Kobayashi Naohiro、Sugiki Toshihiko、Nagashima Toshio、Fujiwara Toshimichi、Koga Rie、Chikenji George、Koga Nobuyasu
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2021.08.06.455475

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
  • [Journal Article] The register shift rules for βαβ-motifs for de novo protein design2021

    • Author(s)
      Murata Hiroto、Imakawa Hayao、Koga Nobuyasu、Chikenji George
    • Journal Title

      PLOS ONE

      Volume: 16 Issue: 8 Pages: e0256895-e0256895

    • DOI

      10.1371/journal.pone.0256895

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] State-Targeting Stabilization of Adenosine A2A Receptor by Fusing a Custom-Made De Novo Designed α-Helical Protein2021

    • Author(s)
      Mitsumoto Masaya、Sugaya Kanna、Kazama Kazuki、Nakano Ryosuke、Kosugi Takahiro、Murata Takeshi、Koga Nobuyasu
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 23 Pages: 12906-12906

    • DOI

      10.3390/ijms222312906

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] タンパク質の合理設計技術開発2021

    • Author(s)
      古賀理恵,古賀信康
    • Journal Title

      化学と工業

      Volume: 74(8) Pages: 576-578

    • Related Report
      2020 Annual Research Report
  • [Journal Article] Synthetic biology approaches to dissecting linear motor protein function: towards the design and synthesis of artificial autonomous protein walkers2020

    • Author(s)
      Linke Heiner、Hoecker Birte、Furuta Ken’ya、Forde Nancy R.、Curmi Paul M. G.
    • Journal Title

      Biophysical Reviews

      Volume: 12 Issue: 4 Pages: 1041-1054

    • DOI

      10.1007/s12551-020-00717-1

    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Robust folding of a de novo designed ideal protein even with most of the core mutated to valine.2020

    • Author(s)
      R. Koga, M. Yamamoto, K. Takahiro, N. Kobayashi, T. Sugiki, T. Fujiwara and N. Koga
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 117 Issue: 49 Pages: 31149-31156

    • DOI

      10.1073/pnas.2002120117

    • NAID

      120006952207

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Consistency Principle for Protein Design2020

    • Author(s)
      KOGA Rie、KOGA Nobuyasu
    • Journal Title

      Seibutsu Butsuri

      Volume: 60 Issue: 6 Pages: 325-330

    • DOI

      10.2142/biophys.60.325

    • NAID

      130007945849

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gliding filament system giving both global orientational order and clusters in collective motion2020

    • Author(s)
      Tanida Sakurako、Furuta Ken'ya、Nishikawa Kaori、Hiraiwa Tetsuya、Kojima Hiroaki、Oiwa Kazuhiro、Sano Masaki
    • Journal Title

      Physical Review E

      Volume: 101 Issue: 3

    • DOI

      10.1103/physreve.101.032607

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Collective motility of dynein linear arrays built on DNA nanotubes2020

    • Author(s)
      Ibusuki Ryota、Shiraga Misaki、Furuta Akane、Yoshio Maki、Kojima Hiroaki、Oiwa Kazuhiro、Furuta Ken’ya
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 523 Issue: 4 Pages: 1014-1019

    • DOI

      10.1016/j.bbrc.2019.12.125

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Different motilities of microtubules driven by kinesin-1 and kinesin-14 motors patterned on nanopillars.2020

    • Author(s)
      Taikopaul Kaneko,Ken'ya Furuta,Kazuhiro Oiwa,Hirofumi Shintaku,Hidetoshi Kotera,Ryuji Yokokawa
    • Journal Title

      Science Advances

      Volume: 6 Issue: 4 Pages: 7413-7413

    • DOI

      10.1126/sciadv.aax7413

    • NAID

      120006779802

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] De Novo Design of Allosteric Control into Rotary Motor V1-ATPase by Restoring Lost Function2020

    • Author(s)
      Kosugi Takahiro、Iida Tatsuya、Tanabe Mikio、Iino Ryota、Koga Nobuyasu
    • Journal Title

      bioRxiv

      Volume: 2020.09.09

    • DOI

      10.1101/2020.09.09.288571

    • Related Report
      2019 Annual Research Report
    • Open Access
  • [Journal Article] Transport of microtubules according to the number and spacing of kinesin motors on gold nano-pillars2019

    • Author(s)
      Kaneko Taikopaul、Ando Suguru、Furuta Ken’ya、Oiwa Kazuhiro、Shintaku Hirofumi、Kotera Hidetoshi、Yokokawa Ryuji
    • Journal Title

      Nanoscale

      Volume: 000 Issue: 20 Pages: 1-9

    • DOI

      10.1039/c9nr01324e

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ShadowR: a novel chromoprotein with reduced non-specific binding and improved expression in living cells2019

    • Author(s)
      Murakoshi Hideji、Horiuchi Hiroshi、Kosugi Takahiro、Onda Maki、Sato Aiko、Koga Nobuyasu、Nabekura Junichi
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 12072-12072

    • DOI

      10.1038/s41598-019-48604-4

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Kinesin-6 Klp9 plays motor-dependent and -independent roles in collaboration with Kinesin-5 Cut7 and the microtubule crosslinker Ase1 in fission yeast2019

    • Author(s)
      Masashi Yukawa, Masaki Okazaki, Yasuhiro Teratani, Ken'ya Furuta and Takashi Toda
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 7336-7336

    • DOI

      10.1038/s41598-019-43774-7

    • NAID

      120006734931

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein2019

    • Author(s)
      Basak Sujit、Nobrega R. Paul、Tavella Davide、Deveau Laura M.、Koga Nobuyasu、Tatsumi-Koga Rie、Baker David、Massi Francesca、Matthews C. Robert
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 116 Issue: 14 Pages: 6806-6811

    • DOI

      10.1073/pnas.1818744116

    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Consistency principle for protein design2019

    • Author(s)
      Koga Rie、Koga Nobuyasu
    • Journal Title

      Biophysics and Physicobiology

      Volume: 16 Issue: 0 Pages: 304-309

    • DOI

      10.2142/biophysico.16.0_304

    • NAID

      130007752765

    • ISSN
      2189-4779
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] DNAナノ構造体を駆動するモータータンパク質の開発と応用2024

    • Author(s)
      古田 健也
    • Organizer
      第7回分子ロボティクス年次大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 合理デザインによる新規タンパク質の創製2024

    • Author(s)
      古賀 信康
    • Organizer
      新潟大学コアステーション ユビキタスグリーンケミカルエネルギー連携教育研究センター (UGCE) 第14回シンポジウム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] ゼロからのタンパク質デザイン:折りたたみ可能なトポロジー数2024

    • Author(s)
      古賀 信康
    • Organizer
      第20回ABC-InFO講演会・交流会「生体適合化学の進歩」インタラクティブフォーラム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Exploration of novel protein topologies through de novo design2024

    • Author(s)
      古賀 信康
    • Organizer
      第27回産研国際シンポジウム: Science Chat in AI and Metaverse
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Allosteric control of rotary molecular motor by using protein design method2024

    • Author(s)
      小杉 貴洋
    • Organizer
      OIST-JST JOINT MEETING
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 構造解析が導くタンパク質の設計・改造とその理解2024

    • Author(s)
      小杉 貴洋
    • Organizer
      2023年度量子ビームサイエンスフェスタ
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] タンパク質設計技術による定量生物学を目指して2024

    • Author(s)
      小杉 貴洋
    • Organizer
      定量生物学の会 第十一回年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] タンパク質設計技術は単細胞生物研究に役立つのか?2024

    • Author(s)
      小杉 貴洋
    • Organizer
      2023年度国立遺伝学研究所研究会「微生物の細胞複製システムから紐解く生命のデザイン」
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Toward developing a new field of biology based on protein design, The 2157th NIG Biological Symposium2023

    • Author(s)
      小杉 貴洋
    • Organizer
      The 2157th NIG Biological Symposium
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Toward understanding roles of yeast Tor complexes by structure-based engineering approach2023

    • Author(s)
      小杉 貴洋
    • Organizer
      第61回日本生物物理学会シンポジウム「トア複合体による細胞応答の仕組みを理解する」
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 計算機設計技術を用いたスーパー酵素の創出2023

    • Author(s)
      小杉 貴洋
    • Organizer
      第96回 日本生化学会大会 シンポジウム「情報計算科学にもとづく酵素の創成と応用~スーパー酵素が切り拓く生化学の新時代~」
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] タンパク質設計技術による細胞内回転型分子モーターの制御を目指して2023

    • Author(s)
      小杉 貴洋
    • Organizer
      第12回分子モーター討論会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 生物分子モーターは独立した2つの運動機構を併用して機能する2023

    • Author(s)
      古田 健也
    • Organizer
      第12回分子モーター討論会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 分子モーターが一方向性運動を生み出す仕組みの解明2023

    • Author(s)
      古田 健也
    • Organizer
      第4回 発動分子科学研究会(発動・機動変形ジョイント会議)
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 自然界に無いトポロジーを持つタンパク質のデザイン2023

    • Author(s)
      古賀 信康
    • Organizer
      ワークショップ:Synthetic Biology -生物学の新たな潮流
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 新規トポロジーを持つタンパク質の人工設計:折りたたみ可能なトポロジー数?2023

    • Author(s)
      古賀 信康
    • Organizer
      第34回生体機能関連化学部若手の会サマースクール, 日本化学会生体機能関連化学部会・日本化学会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 蛋白質複合体が生み出す協奏的な機能の合理的な制御を目指して2023

    • Author(s)
      小杉 貴洋
    • Organizer
      第23回蛋白質科学会年会 シンポジウム「加速するタンパク質デザイン」
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Exploration of novel protein folds through de novo design: How many possible folds exist?2023

    • Author(s)
      古賀 信康
    • Organizer
      The 21st KIAS (Korea Institute for Advanced Study) Conference on Protein Structure and Function
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Exploration of novel protein folds through de novo design Program2023

    • Author(s)
      古賀 信康
    • Organizer
      The molecular organization of living systems
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Allosteric control of rotary motor V1-ATPase by redesigning pseudo-active sites2023

    • Author(s)
      小杉 貴洋
    • Organizer
      The East Asia Single-Molecule Biology Symposium 2023
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Programmable molecular transport achieved by engineering protein motors to move on DNA nanotubes2023

    • Author(s)
      古田 健也
    • Organizer
      49th Naito Conference~Frontiers of Microtubule and Its-Related Motors: Atomic Structures, Cellular Functions, Development and Diseases
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Control of functions exerted by protein complexes using protein design methods2023

    • Author(s)
      小杉 貴洋
    • Organizer
      16th Eurasia Conference on Chemical Sciences 2023
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Design principles for proteins and exploration of novel ones2023

    • Author(s)
      古賀信康
    • Organizer
      IPR x RIKEN(BDR) Symposium 2023 「Dive into Data of Life」
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Engineering motor proteins to move on DNA nanotubes for programmable molecular transport2022

    • Author(s)
      古田 健也
    • Organizer
      The Max Planck Frontier Symposium Information processing by synthetic cells
    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生物分子モーターをいじり倒して一方向性の発現機構を考える2022

    • Author(s)
      古田 健也
    • Organizer
      第22回 日本蛋白質科学会 発動分子共催ワークショップ
    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Invited
  • [Presentation] 新規タンパク質配列空間の探索2022

    • Author(s)
      古賀 信康
    • Organizer
      第25回高速分子動画オンラインセミナー
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 新規タンパク質構造の設計2022

    • Author(s)
      古賀 信康
    • Organizer
      WINGS-LST/SPRING-GX コロキウム 2022
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 新規タンパク質構造の創出(2SCP 生体分子の人工設計:タンパク質、RNA、DNA)2022

    • Author(s)
      古賀 信康
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] タンパク質の合理設計手法の開発:酵素の耐熱化とゼロからの設計2022

    • Author(s)
      古賀 信康
    • Organizer
      キリンホールディングス株式会社 R&D本部 キリン中央研究所
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] タンパク質の合理設計:自然界のタンパク質の改造、新規創成 (WS2 発動分子エンジニアリング: タンパク質分子機械をいじり倒して実現する新機能)2022

    • Author(s)
      古賀 信康
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 機能を持った“新しい”蛋白質の設計2022

    • Author(s)
      小杉 貴洋
    • Organizer
      第22回日本蛋白質科学会年会 ワークショップ「AlphaFoldの時代の分子シミュレーション」
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 蛋白質(計算)科学から始まる生物学を目指して2022

    • Author(s)
      小杉 貴洋
    • Organizer
      第22回日本蛋白質科学会年会 シンポジウム「未来の話をしよう!」
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 人生の選択:その時私が考えたこと2022

    • Author(s)
      小杉 貴洋
    • Organizer
      蛋白質科学会若手の会 第二回研究交流会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] アロステリック部位を設計して回転分子モーターを制御する2022

    • Author(s)
      小杉 貴洋
    • Organizer
      第6回 学術変革(B) SPEED journal club
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 高次構造体の協奏的機能を合理的に制御することを目指して2022

    • Author(s)
      小杉 貴洋
    • Organizer
      第60回日本生物物理学会年会  JST さきがけ「細胞の動的高次構造体」共催シンポジウム 高次構造体を自在に操る(
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] タンパク質設計技術を用いて生体内化学反応を理解・制御する2022

    • Author(s)
      小杉 貴洋
    • Organizer
      化学反応のポテンシャル曲面とダイナミックス
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] De novo design of protein structures2022

    • Author(s)
      Nobuyasu Koga
    • Organizer
      iNANO-IMS-ExCELLS Interdisciplinary Nanoscience Joint Meeting
    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] De novo design of novel protein structures2022

    • Author(s)
      Nobuyasu Koga
    • Organizer
      Bayreuth, Germany
    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Allosteric control of rotary molecular motor by redesigning non-catalytic interface2022

    • Author(s)
      Takahiro Kosugi
    • Organizer
      Sendai2022 Workshop
    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 整合性原理と新規タンパク質デザイン2022

    • Author(s)
      古賀信康
    • Organizer
      自然科学研究機構計算科学研究センタースーパーコンピュータ ワークショップ 2021「生体分子の構造・機能・デザインの計算科学」
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 創って理解する 生命現象をつかさどる分子「タンパク質」2022

    • Author(s)
      古賀信康
    • Organizer
      第 33回自然科学研究機構シンポジウム「宇宙と,分子と,私たち」
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 新規タンパク質配列空間の探索2022

    • Author(s)
      古賀信康
    • Organizer
      第25回高速分子動画オンラインセミナー
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 新規タンパク質構造の設計2022

    • Author(s)
      古賀信康
    • Organizer
      WINGS-LST/SPRING-GX コロキウム 2022
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 新規タンパク質構造の創出(2SCP 生体分子の人工設計:タンパク質、RNA、DNA)2022

    • Author(s)
      古賀信康
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] タンパク質の合理設計手法の開発:酵素の耐熱化とゼロからの設計2022

    • Author(s)
      古賀信康
    • Organizer
      キリンホールディングス株式会社 R&D本部 キリン中央研究所
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] タンパク質の合理設計:自然界のタンパク質の改造、新規創成 (WS2 発動分子エンジニアリング: タンパク質分子機械をいじり倒して実現する新機能)2022

    • Author(s)
      古賀信康
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 機能を持った“新しい”蛋白質の設計2022

    • Author(s)
      小杉貴洋
    • Organizer
      第22回日本蛋白質科学会年会 ワークショップ「AlphaFoldの時代の分子シミュレーション」
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 蛋白質(計算)科学から始まる生物学を目指して2022

    • Author(s)
      小杉貴洋
    • Organizer
      第22回日本蛋白質科学会年会 シンポジウム「未来の話をしよう!」
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 人生の選択:その時私が考えたこと2022

    • Author(s)
      小杉貴洋
    • Organizer
      蛋白質科学会若手の会 第二回研究交流会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] アロステリック部位を設計して回転分子モーターを制御する2022

    • Author(s)
      小杉貴洋
    • Organizer
      第6回 学術変革(B) SPEED journal club
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 高次構造体の協奏的機能を合理的に制御することを目指して2022

    • Author(s)
      小杉貴洋
    • Organizer
      第60回日本生物物理学会年会  JST さきがけ「細胞の動的高次構造体」共催シンポジウム 高次構造体を自在に操る
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] タンパク質設計技術を用いて生体内化学反応を理解・制御する2022

    • Author(s)
      小杉貴洋
    • Organizer
      化学反応のポテンシャル曲面とダイナミックス
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 創って理解する 生命現象をつかさどる分子「タンパク質」2022

    • Author(s)
      古賀信康
    • Organizer
      第33回自然科学研究機構シンポジウム「宇宙と、分子と、私たち」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 整合性原理と新規タンパク質デザイン2022

    • Author(s)
      古賀信康
    • Organizer
      自然科学研究機構・計算科学研究センター, スーパーコンピューターワークショップ2021「生体分子の構造・機能・デザインの計算科学」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 合理設計による新規タンパク質配列空間の探索2021

    • Author(s)
      古賀信康
    • Organizer
      Cell Biology Center Colloquium
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Exploration of novel protein structures by de novo design2021

    • Author(s)
      古賀信康
    • Organizer
      OIST Mini Symposium “New Protein by Evolution and Engineering
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 自然に観測されないトポロジーを持つタンパク質の人工設計2021

    • Author(s)
      古賀信康
    • Organizer
      第4回ExCELLS シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] タンパク質ブロックを組み合わせて新しい生物分子モーターをデザインする2021

    • Author(s)
      古田 健也
    • Organizer
      第21回 日本蛋白質科学会 ワークショップ「発動分子科学:生体分子モーターから、人工分子機械まで」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Engineering motor proteins to recognize DNA codes for programmable transport on DNA nanotubes2021

    • Author(s)
      古田 健也
    • Organizer
      ArtMoMa国際シンポジウム
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 生物分子モーターの再デザインと計測2021

    • Author(s)
      古田 健也
    • Organizer
      第59回 日本生物物理学会年会シンポジウム 「生体分子の構造的・機能的ダイナミクス:1分子計測と分子シミュレーションの交流」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Programmable molecular transport achieved by engineering bio-motors to move on DNA nanostructures2021

    • Author(s)
      古田 健也
    • Organizer
      3rd Conference on Biomotors, Virus Assembly, and Nanobiotechnology Applications
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 自然に観測されないトポロジーを持つタンパク質の人工設計2021

    • Author(s)
      古賀信康
    • Organizer
      ExCELLSシンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Rosettaから見たAlphaFold22021

    • Author(s)
      小杉貴洋
    • Organizer
      第59回日本生物物理学会 第8回会員総会シンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Exploration of novel protein structures by de novo design2021

    • Author(s)
      古賀信康
    • Organizer
      OIST, Mini Symposium “New Protein by Evolution and Engineering”
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 合理設計による新規タンパク質配列空間の探索2021

    • Author(s)
      古賀信康
    • Organizer
      東京工業大学, Cell Biology Center Colloquium
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] De novo design of novel protein structures2021

    • Author(s)
      古賀信康
    • Organizer
      Molecular Engine International Mini-workshop「Molecular Engine in Virtual or Real World?」
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 失われた機能を復活させて回転分子モーターをアロステリック制御する2021

    • Author(s)
      小杉貴洋
    • Organizer
      第10回分子モーター討論会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] タンパク質とDNAで作る微小機械2020

    • Author(s)
      古田 健也
    • Organizer
      日本化学会秋季事業 第10回CSJ化学フェスタ2020
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 小さな自律型ロボットの開発に向けた生物分子モーターの再デザイン2020

    • Author(s)
      古田 健也
    • Organizer
      新学術領域合同シンポジウム-ソフトロボット学と発動分子科学の境界-
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 合理設計によるタンパク質配列空間の探索:NMRによる構造決定はその羅針盤2020

    • Author(s)
      古賀信康
    • Organizer
      大阪大学蛋白質研究所セミナ―
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Exploration of novel protein folds by de novo design2020

    • Author(s)
      古賀信康
    • Organizer
      日本生物物理学会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] DESIGN OF GLOBIN-LIKE COMPLICATED FOLDS2020

    • Author(s)
      K. Sakuma, N. Kobayashi, T. Sugiki, K. Suzuki, N. Kobayashi, T. Kosugi, T. Murata, R. Koga, N. Koga
    • Organizer
      The Biophysical Society Annual Meeting 2020
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] EXPLORATION OF NOVEL ALPHA-BETA PROTEIN FOLDS BY DE NOVO DESIGN2020

    • Author(s)
      S. Minami, N. Kobayashi, T. Sugiki, R. Koga, G. Chikenji, N. Koga
    • Organizer
      The Biophysical Society Annual Meeting 2020
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Toward creation of artificial proteins self-assembling into diverse symmetric structures: computational design and Experimental2020

    • Author(s)
      N. Kobayashi, N. Koga
    • Organizer
      The 1st International Symposium on Molecular Engine
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Exploration of novel protein folds by de novo design2020

    • Author(s)
      古賀信康
    • Organizer
      2020 World Conference on Protein Science 「Physics of Protein Evolution」
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Biomolecular Design to Control their Functions2020

    • Author(s)
      古賀信康
    • Organizer
      第58回日本生物物理学会年会シンポジウム「Biomolecular Design to Control their Functions」
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Collective motility of dynein linear arrays built on DNA nanotubes2020

    • Author(s)
      指宿 良太, 白髪 美咲, 古田 茜, 吉雄 麻喜, 小嶋 寛明, 大岩 和弘, 古田 健也
    • Organizer
      第58回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Toward creation of artificial proteins self-assembling into diverse symmetric structures: computational design and experimental2020

    • Author(s)
      N. Kobayashi, N. Koga
    • Organizer
      The 1st International Symposium on Molecular Engine
    • Related Report
      2018 Annual Research Report
  • [Presentation] Re-design of biomolecular motors and their systems2019

    • Author(s)
      古田 健也
    • Organizer
      第57回 日本生物物理学会年会 カレントトピックス・セッション
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] DNAナノフィラメント上を移動する改変型ダイニンを用いた人工輸送システムの創生2019

    • Author(s)
      指宿 良太、森下 達矢、古田 茜、大岩 和弘、小嶋 寛明、古田 健也
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] DNA上を動く改変ダイニンを用いて結合性と運動速度を系統的に調べる2019

    • Author(s)
      森下 達矢、指宿 良太、古田 茜、大岩 和弘、小嶋 寛明、古田 健也
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Re-design of linear molecular motors2019

    • Author(s)
      指宿 良太、古田 茜、森下 達矢、大岩 和弘、小嶋 寛明、古田 健也
    • Organizer
      63rd Annual Meeting of the Biophysical Society
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] De novo design of ATP-binding protein with two-domain structure2019

    • Author(s)
      H. Yamada, K. Nakamura, T. Kosugi, N. Koga
    • Organizer
      2nd Tokyo ATPase Workshop
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
  • [Presentation] Allosteric Regulation of V1-ATPase by Designing Walker Motif in Non-catalytic Interface2019

    • Author(s)
      T. Kosugi
    • Organizer
      2nd Tokyo ATPase Worksho
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Design of Allosteric Site to Regulate Rotary Molecular Motor V1-ATPase2019

    • Author(s)
      T. Kosugi
    • Organizer
      Frontier Bioorganization Forum 2019
    • Related Report
      2019 Annual Research Report 2018 Annual Research Report
    • Invited
  • [Presentation] Allosteric Regulation of V1-ATPase by Designing Walker Motif in Non-catalytic Interface2019

    • Author(s)
      T. Kosugi
    • Organizer
      2nd Tokyo ATPase Workshop
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Re-design of linear molecular motors2018

    • Author(s)
      古田 健也
    • Organizer
      Sendai Workshop: An Update on Molecular Motors:Open Challenges and New Perspectives
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Re‐design of biomolecular motors2018

    • Author(s)
      古田 健也
    • Organizer
      The 79th Okazaki Conference: Synthetic, Biological, and Hybrid Molecular Engines
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] DBTL in protein design2018

    • Author(s)
      N. Koga
    • Organizer
      Trends in Computational Molecular Biology
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Rational Design of ATP Binding Site to Understand Rotary Molecular Motor2018

    • Author(s)
      T. Kosugi
    • Organizer
      The 79th Okazaki Conference: Synthetic, Biological, and Hybrid Molecular Engines
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Impact of the sequence difference of P-loop on the conformational changes of F1-ATPase2018

    • Author(s)
      R. Koga, H. Ueno, T. Masaike, H. Noji, N. Koga
    • Organizer
      The 79th Okazaki Conference: Synthetic, Biological, and Hybrid Molecular Engines
    • Related Report
      2018 Annual Research Report
  • [Presentation] Toward generation of de novo designed protein structure library2018

    • Author(s)
      N. Koga
    • Organizer
      Frontier Bio-organization forum 2018
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Book] 実験医学2022年9月号 カレントトピックス2022

    • Author(s)
      古田 健也
    • Total Pages
      1159
    • Publisher
      羊土社
    • ISBN
      9784758125598
    • Related Report
      2021 Annual Research Report
  • [Book] 実験医学増刊 タンパク質の新常識 4.de novoデザインタンパク質-生物がもたないタンパク質を設計できる時代2022

    • Author(s)
      古賀理恵、小杉貴洋、古賀信康
    • Total Pages
      2046
    • Publisher
      羊土社
    • Related Report
      2021 Annual Research Report
  • [Book] 現代化学 タンパク質設計技術で目指す未来 特集 現代化学の最前線20232022

    • Author(s)
      小杉貴洋
    • Total Pages
      34
    • Publisher
      東京化学同人
    • Related Report
      2021 Annual Research Report
  • [Book] 化学と工業 タンパク質の合理設計技術開発2021

    • Author(s)
      古賀理恵,古賀信康
    • Total Pages
      576
    • Publisher
      日本化学会
    • Related Report
      2021 Annual Research Report
  • [Book] 実験医学2019年11月号2019

    • Author(s)
      小杉貴洋、古賀理恵、古賀信康
    • Total Pages
      147
    • Publisher
      羊土社
    • ISBN
      9784758125253
    • Related Report
      2019 Annual Research Report
  • [Book] 実験医学2019年11月号 p.3089‐3095「合理デザインによる新規タンパク質の創出:現状とその可能性」2019

    • Author(s)
      小杉貴洋、古賀理恵、古賀信康
    • Total Pages
      147
    • Publisher
      羊土社
    • ISBN
      9784758125253
    • Related Report
      2018 Annual Research Report

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Published: 2018-07-20   Modified: 2025-01-30  

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