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Dynamics of chromatin potential associating with cellular differentiation and its molecular mechanism

Planned Research

Project AreaChromatin potential for gene regulation
Project/Area Number 18H05530
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Shinkai Yoichi  国立研究開発法人理化学研究所, 開拓研究本部, 主任研究員 (20211972)

Co-Investigator(Kenkyū-buntansha) 平谷 伊智朗  国立研究開発法人理化学研究所, 生命機能科学研究センター, チームリーダー (40583753)
Project Period (FY) 2018-06-29 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥112,840,000 (Direct Cost: ¥86,800,000、Indirect Cost: ¥26,040,000)
Fiscal Year 2022: ¥22,100,000 (Direct Cost: ¥17,000,000、Indirect Cost: ¥5,100,000)
Fiscal Year 2021: ¥22,100,000 (Direct Cost: ¥17,000,000、Indirect Cost: ¥5,100,000)
Fiscal Year 2020: ¥22,100,000 (Direct Cost: ¥17,000,000、Indirect Cost: ¥5,100,000)
Fiscal Year 2019: ¥22,100,000 (Direct Cost: ¥17,000,000、Indirect Cost: ¥5,100,000)
Fiscal Year 2018: ¥24,440,000 (Direct Cost: ¥18,800,000、Indirect Cost: ¥5,640,000)
Keywordsクロマチン / エピジェネティクス / 生化学 / 3Dゲノム構造 / クロマチンリモデリング / クロマチンドメイン / 核内コンパートメント
Outline of Final Research Achievements

Gene expression is regulated in a multilevel hierarchical manner at the nucleosome level, the cell nucleus level, and the intermediate levels of "chromatin domains" and "nuclear compartments," which are megabases (Mb) of chromatin higher-order structure. This higher-order chromatin structure fluctuates during cell differentiation and is thought to be closely related to changes in the potential transcriptional susceptibility of chromatin. In this study, through biochemical approaches and analysis of genome structure using early embryos and mouse embryonic stem (ES) cells, we have elucidated some of the mechanisms of chromatin structural regulation at the Mb unit level that occur during cell differentiation.

Academic Significance and Societal Importance of the Research Achievements

本課題では、初期発生や細胞分化に伴ってクロマチン構造がダイナミックに構造変換することで遺伝子発現が調節される分子機構の一端を明らかにした。また、細胞複製のタイミングと遺伝子発現制御の関係性に関しても新たな知見を得た。本研究の成果は、生命現象のより深い理解に寄与するだけでなく、任意に特定の遺伝子の発現を調節する技術の開発にも有用な情報を提供しており、それを通して、様々な社会的unmet needsの解決に貢献することが期待される。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (162 results)

All 2023 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (8 results) Journal Article (37 results) (of which Int'l Joint Research: 11 results,  Peer Reviewed: 35 results,  Open Access: 35 results) Presentation (107 results) (of which Int'l Joint Research: 12 results,  Invited: 28 results) Remarks (10 results)

  • [Int'l Joint Research] Radboud University Medical Center(オランダ)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] University of British Columbia(カナダ)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] University of Aberdeen(英国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] University of Paris, CNRS(フランス)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Radboud University(オランダ)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Aberdeen(英国)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University Paris, CNRS(フランス)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] University of Aberdeen(英国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] A specific G9a inhibitor unveils BGLT3 lncRNA as a universal mediator of chemically induced fetal globin gene expression2023

    • Author(s)
      Takase S, Hiroyama T, Shirai F, Maemoto Y, Nakata A, Arata M, Matsuoka S, Sonoda T, Niwa H, Sato S, Umehara T, Shirouzu M, Nishigaya Y, Sumiya T, Hashimoto N, Namie R, Usui M, Ohishi T, Ohba SI, Kawada M, Hayashi Y, Harada H, Yamaguchi T, Shinkai Y, Nakamura Y, Yoshida M, Ito A
    • Journal Title

      Nature Communications

      Volume: 14 Issue: 1 Pages: 23-23

    • DOI

      10.1038/s41467-022-35404-0

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic plasticity safeguards heterochromatin configuration in mammals2023

    • Author(s)
      Fukuda Kei、Shimi Takeshi、Shimura Chikako、Ono Takao、Suzuki Takehiro、Onoue Kenta、Okayama Satoko、Miura Hisashi、Hiratani Ichiro、Ikeda Kazuho、Okada Yasushi、Dohmae Naoshi、Yonemura Shigenobu、Inoue Azusa、Kimura Hiroshi、Shinkai Yoichi
    • Journal Title

      Nucleic Acids Research

      Volume: - Issue: 12 Pages: 6190-6207

    • DOI

      10.1093/nar/gkad387

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance2022

    • Author(s)
      Matsuura-Suzuki Eriko、Shimazu Tadahiro、Takahashi Mari、Kotoshiba Kaoru、Suzuki Takehiro、Kashiwagi Kazuhiro、Sohtome Yoshihiro、Akakabe Mai、Sodeoka Mikiko、Dohmae Naoshi、Ito Takuhiro、Shinkai Yoichi、Iwasaki Shintaro
    • Journal Title

      eLife

      Volume: 11 Pages: 1-33

    • DOI

      10.7554/elife.72780

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Large-Scale Chromatin Rearrangements in Cancer2022

    • Author(s)
      Yamaguchi Kosuke、Chen Xiaoying、Oji Asami、Hiratani Ichiro、Defossez Pierre-Antoine
    • Journal Title

      Cancers

      Volume: 14 Issue: 10 Pages: 2384-2384

    • DOI

      10.3390/cancers14102384

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cell cycle dynamics and developmental dynamics of the 3D genome: toward linking the two timescales2022

    • Author(s)
      Miura Hisashi、Hiratani Ichiro
    • Journal Title

      Current Opinion in Genetics & Development

      Volume: 73 Pages: 101898-101898

    • DOI

      10.1016/j.gde.2021.101898

    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 不活性X染色体の三次元構造と遺伝子発現制御2022

    • Author(s)
      平谷伊智朗、プーンパーム・ラウィン
    • Journal Title

      医学のあゆみ『X染色体不活性化と疾患-新たな展開』

      Volume: 283 Pages: 23486-23491

    • Related Report
      2022 Annual Research Report
  • [Journal Article] Mammalian HEMK1 methylates glutamine residue of the GGQ motif of mitochondrial release factors2022

    • Author(s)
      Fang Qi、Kimura Yusuke、Shimazu Tadahiro、Suzuki Takehiro、Yamada Ayumi、Dohmae Naoshi、Iwasaki Shintaro、Shinkai Yoichi
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 4104-4104

    • DOI

      10.1038/s41598-022-08061-y

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Potential role of KRAB-ZFP binding and transcriptional states on DNA methylation of retroelements in human male germ cells2022

    • Author(s)
      Fukuda Kei、Makino Yoshinori、Kaneko Satoru、Shimura Chikako、Okada Yuki、Ichiyanagi Kenji、Shinkai Yoichi
    • Journal Title

      eLife

      Volume: 11

    • DOI

      10.7554/elife.76822

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Highly rigid H3.1/H3.2-H3K9me3 domains set a barrier for cell fate reprogramming in trophoblast stem cells2022

    • Author(s)
      Hada M, Miura H, Tanigawa A, Matoba S, Inoue K, Ogonuki N, Hirose M, Watanabe N, Nakato R, Fujiki K, Hasegawa A, Sakashita A, Okae H, Miura K, Shikata D, Arima T, Shirahige K, Hiratani I, Ogura A.
    • Journal Title

      Genes Dev

      Volume: 36 Issue: 1-2 Pages: 84-102

    • DOI

      10.1101/gad.348782.121

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] SAF-A promotes origin licensing and replication fork progression to ensure robust DNA replication2022

    • Author(s)
      Connolly Caitlin、Takahashi Saori、Miura Hisashi、Hiratani Ichiro、Gilbert Nick、Donaldson Anne D.、Hiraga Shin-Ichiro
    • Journal Title

      Journal of Cell Science

      Volume: 135 Issue: 2

    • DOI

      10.1242/jcs.258991

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Regulation of mammalian 3D genome organization and histone H3K9 dimethylation by H3K9 methyltransferases2021

    • Author(s)
      Fukuda Kei、Shimura Chikako、Miura Hisashi、Tanigawa Akie、Suzuki Takehiro、Dohmae Naoshi、Hiratani Ichiro、Shinkai Yoichi
    • Journal Title

      Communications Biology

      Volume: 4 Issue: 1 Pages: 571-571

    • DOI

      10.1038/s42003-021-02089-y

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A cost efficient protocol to introduce epitope tags by CRISPR-Cas9 mediated gene knock-in with asymmetric semi-double stranded template2021

    • Author(s)
      Fang Qi、Shinkai Yoichi
    • Journal Title

      MethodsX

      Volume: 8 Pages: 101365-101365

    • DOI

      10.1016/j.mex.2021.101365

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Derepression of inflammation-related genes link to microglia activation and neural maturation defect in a mouse model of Kleefstra syndrome2021

    • Author(s)
      Yamada Ayumi、Hirasawa Takae、Nishimura Kayako、Shimura Chikako、Kogo Naomi、Fukuda Kei、Kato Madoka、Yokomori Masaki、Hayashi Tetsutaro、Umeda Mana、Yoshimura Mika、Iwakura Yoichiro、Nikaido Itoshi、Itohara Shigeyoshi、Shinkai Yoichi
    • Journal Title

      iScience

      Volume: 24 Issue: 7 Pages: 102741-102741

    • DOI

      10.1016/j.isci.2021.102741

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DMRT1-mediated reprogramming drives development of cancer resembling human germ cell tumors with features of totipotency2021

    • Author(s)
      Taguchi Jumpei、Shibata Hirofumi、Kabata Mio、Kato Masaki、Fukuda Kei、Tanaka Akito、Ohta Sho、Ukai Tomoyo、Mitsunaga Kanae、Yamada Yosuke、Nagaoka So I、Yamazawa Sho、Ohnishi Kotaro、Woltjen Knut、Ushiku Tetsuo、Ozawa Manabu、Saitou Mitinori、Shinkai Yoichi、Yamamoto Takuya、Yamada Yasuhiro
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 5041-5041

    • DOI

      10.1038/s41467-021-25249-4

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A loss-of-function variant in SUV39H2 identified in autism-spectrum disorder causes altered H3K9 trimethylation and dysregulation of protocadherin β-cluster genes in the developing brain2021

    • Author(s)
      Balan Shabeesh、-25名-, Shinkai Yoichi、Yoshikawa Takeo
    • Journal Title

      Molecular Psychiatry

      Volume: 26 Issue: 12 Pages: 7550-7559

    • DOI

      10.1038/s41380-021-01199-7

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Propargylic Se-adenosyl-l-selenomethionine: A Chemical Tool for Methylome Analysis2021

    • Author(s)
      Sohtome Yoshihiro、Shimazu Tadahiro、Shinkai Yoichi、Sodeoka Mikiko
    • Journal Title

      Accounts of Chemical Research

      Volume: 54 Issue: 20 Pages: 3818-3827

    • DOI

      10.1021/acs.accounts.1c00395

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dynamics of transcription-mediated conversion from euchromatin to facultative heterochromatin at the Xist promoter by Tsix2021

    • Author(s)
      Ohhata Tatsuya、Yamazawa Kazuki、Miura-Kamio Asuka、Takahashi Saori、Sakai Satoshi、Tamura Yuka、Uchida Chiharu、Kitagawa Kyoko、Niida Hiroyuki、Hiratani Ichiro、Kobayashi Hisato、Kimura Hiroshi、Wutz Anton、Kitagawa Masatoshi
    • Journal Title

      Cell Reports

      Volume: 34 Issue: 13 Pages: 108912-108912

    • DOI

      10.1016/j.celrep.2021.108912

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Temporal Order of DNA Replication Shaped by Mammalian DNA Methyltransferases2021

    • Author(s)
      Takebayashi Shin-ichiro、Ryba Tyrone、Wimbish Kelsey、Hayakawa Takuya、Sakaue Morito、Kuriya Kenji、Takahashi Saori、Ogata Shin、Hiratani Ichiro、Okumura Katsuzumi、Okano Masaki、Ogata Masato
    • Journal Title

      Cells

      Volume: 10 Issue: 2 Pages: 266-266

    • DOI

      10.3390/cells10020266

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Formation of a multi‐layered 3‐dimensional structure of the heterochromatin compartment during early mammalian development2021

    • Author(s)
      Poonperm Rawin、Hiratani Ichiro
    • Journal Title

      Development, Growth & Differentiation

      Volume: 63 Issue: 1 Pages: 5-17

    • DOI

      10.1111/dgd.12709

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] SETDB1-Mediated Silencing of Retroelements2020

    • Author(s)
      Fukuda Kei、Shinkai Yoichi
    • Journal Title

      Viruses

      Volume: 12 Issue: 6 Pages: 596-596

    • DOI

      10.3390/v12060596

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The fibronectin type-III (FNIII) domain of ATF7IP contributes to efficient transcriptional silencing mediated by the SETDB1 complex2020

    • Author(s)
      Tsusaka Takeshi、Fukuda Kei、Shimura Chikako、Kato Masaki、Shinkai Yoichi
    • Journal Title

      Epigenetics & Chromatin

      Volume: 13 Issue: 1 Pages: 52-52

    • DOI

      10.1186/s13072-020-00374-4

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing2020

    • Author(s)
      Miura Hisashi、Takahashi Saori、Shibata Takahiro、Nagao Koji、Obuse Chikashi、Okumura Katsuzumi、Ogata Masato、Hiratani Ichiro、Takebayashi Shin-ichiro
    • Journal Title

      Nature Protocols

      Volume: 15 Issue: 12 Pages: 4058-4100

    • DOI

      10.1038/s41596-020-0378-5

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization2020

    • Author(s)
      Soya Shinkai, Takeshi Sugawara, Hisashi Miura, Ichiro Hiratani, Shuichi Onami
    • Journal Title

      Biophysical Journal

      Volume: 118 Issue: 9 Pages: 2220-2228

    • DOI

      10.1016/j.bpj.2020.02.020

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?2020

    • Author(s)
      Kadota M, Nishimura O, Miura H, Tanaka K, Hiratani I, *Kuraku S.
    • Journal Title

      Gigascience

      Volume: 9 Issue: 1

    • DOI

      10.1093/gigascience/giz158

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ATF7IP regulates SETDB1 nuclear localization and increases its ubiquitination2019

    • Author(s)
      Tsusaka T. Shimura C. *Shinkai Y.
    • Journal Title

      EMBO reports

      Volume: 20 Issue: 12

    • DOI

      10.15252/embr.201948297

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis.2019

    • Author(s)
      †Abdalla MOA, †Yamamoto T, Maehara K, Ohkawa Y, Miura H, Hiratani I, Nakayama H, Nakao M, *Saitoh N
    • Journal Title

      Nat Commun

      Volume: 10 Issue: 1 Pages: 3778-3778

    • DOI

      10.1038/s41467-019-11378-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Single-cell DNA Replication Profiling Identifies Spatiotemporal Developmental Dynamics of Chromosome Organization.2019

    • Author(s)
      Miura H, Takahashi S, Poonperm R, Tanigawa A, Takebayashi S I, and Hiratani I.
    • Journal Title

      Nature Genetics

      Volume: 51 Issue: 9 Pages: 1356-1368

    • DOI

      10.1038/s41588-019-0474-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure of the UHRF1 Tandem Tudor Domain Bound to a Methylated Non-histone Protein, LIG1, Reveals Rules for Binding and Regulation2019

    • Author(s)
      Kori, S. Ferry, L. Matano, S. Jimenji, T. Kodera, N. Tsusaka, T. Matsumura, R. Oda, T. Sato, M. Dohmae, N. Ando, T. Shinkai, Y. Defossez, P. A. Arita, K.
    • Journal Title

      Structure

      Volume: 27 Issue: 3 Pages: 1-12

    • DOI

      10.1016/j.str.2018.11.012

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection.2019

    • Author(s)
      Yeung WKA, Brind’Amour J, Hatano Y, Yamagata K, Feil R, Matthew C. Lorincz MC, Tachibana M, Shinkai Y, Sasaki H*.
    • Journal Title

      Cell Rep.

      Volume: 27 Issue: 1 Pages: 282-293

    • DOI

      10.1016/j.celrep.2019.03.002

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genome-wide stability of the DNA replication program in single mammalian cells2019

    • Author(s)
      Saori Takahashi, Hisashi Miura, Takahiro Shibata, Koji Nagao, Katsuzumi Okumura, Masato Ogata, Chikashi Obuse, Shin-ichiro Takebayashi and Ichiro Hiratani
    • Journal Title

      Nature Genetics

      Volume: 51 Issue: 3 Pages: 529-540

    • DOI

      10.1038/s41588-019-0347-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA replication timing enters the single-cell era2019

    • Author(s)
      Ichiro Hiratani and Saori Takahashi
    • Journal Title

      Genes

      Volume: 10 Issue: 3 Pages: 221-221

    • DOI

      10.3390/genes10030221

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A CRISPR knockout screen Identifies SETDB1-target retroelement silencing factors in embryonic stem cells2018

    • Author(s)
      Fukuda Kei、Okuda Akihiko、Yusa Kosuke、Shinkai Yoichi
    • Journal Title

      Genome Research

      Volume: 28 Issue: 6 Pages: 1-13

    • DOI

      10.1101/gr.227280.117

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Tri-methylation of ATF7IP by G9a/GLP recruits the chromodomain protein MPP8.2018

    • Author(s)
      Tsusaka T, Kikuchi M, Shimazu T, Suzuki T, Sohtome Y, Akakabe M, Sodeoka M, Dohmae N, Takashi Umehara T, Shinkai Y*.
    • Journal Title

      Epigenetics and chromatin.

      Volume: 11 Issue: 1 Pages: 56-56

    • DOI

      10.1186/s13072-018-0231-z

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] G9a-dependent histone methylation can be induced in G1 phase of cell cycle.2018

    • Author(s)
      Fukuda M, Sakaue-Sawano A, Shimura C, Tachibana M, Miyawaki A, Shinkai Y.
    • Journal Title

      Sci. Rep.

      Volume: 9 Issue: 1 Pages: 956-956

    • DOI

      10.1038/s41598-018-37507-5

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Practical Analysis of Hi-C Data: Generating A/B Compartment Profiles2018

    • Author(s)
      Hisashi Miura, Rawin Poonperm, Saori Takahashi and Ichiro Hiratani
    • Journal Title

      Methods in Molecular Biology

      Volume: 1861 Pages: 221-245

    • DOI

      10.1007/978-1-4939-8766-5_16

    • ISBN
      9781493987658, 9781493987665
    • Related Report
      2018 Annual Research Report
    • Open Access
  • [Journal Article] Srf destabilizes cellular identity by suppressing cell-type-specific gene expression programs2018

    • Author(s)
      Ikeda T, Hikichi T, Miura H, Shibata H, Mitsunaga K, Yamada Y, Woltjen K, Miyamoto K, Watanabe A, Hiratani I, Yamada Y, Yamamoto T, Hotta A, Okita K, Masui S
    • Journal Title

      Nat Commun.

      Volume: 9 Issue: 1 Pages: 1387-1387

    • DOI

      10.1038/s41467-018-03748-1

    • NAID

      120006517799

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic differences between naive and primed pluripotent stem cells2018

    • Author(s)
      Takahashi Saori、Kobayashi Shin、Hiratani Ichiro
    • Journal Title

      Cellular and Molecular Life Sciences

      Volume: 75 Issue: 7 Pages: 1191-1203

    • DOI

      10.1007/s00018-017-2703-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Somatic DNA replication timing program emerges with a unique transitional S-phase during early mouse embryogenesis2023

    • Author(s)
      Hiratani I
    • Organizer
      RIKEN BDR Symposium 2023 “Transitions in Biological Systems”
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The embryonic-to-somatic DNA replication program switch is accompanied by the emergence of a fragile S-phase2023

    • Author(s)
      平谷伊智朗
    • Organizer
      第3回有性生殖研究会「生殖の多様性」
    • Related Report
      2022 Annual Research Report
  • [Presentation] 潜在的不安定性から読み解くゲノム設計原理2023

    • Author(s)
      平谷伊智朗
    • Organizer
      JST CREST・さきがけ「ゲノムスケールのDNA設計・合成による細胞制御技術の創出」研究領域 Zoomオンラインセミナー
    • Related Report
      2022 Annual Research Report
  • [Presentation] Unraveling the dynamic 3D genome architecture through single-cell DNA replication profiling2022

    • Author(s)
      Hiratani I
    • Organizer
      The 14th International Congress of Cell Biology & 9th Asian Pacific Organization for Cell Biology (2022 ICCB & APOCB)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Replication dynamics identifies the folding principles of the inactive X chromosome2022

    • Author(s)
      Hiratani I
    • Organizer
      Japan-UK Regulation through Chromatin Conference
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 1細胞全ゲノムDNA複製解析からゲノム三次元構造動態を探る2022

    • Author(s)
      平谷伊智朗
    • Organizer
      染色体学会 第73回年会シンポジウム
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 哺乳類でのヘテロクロマチンのエピジェネティック可塑性2022

    • Author(s)
      眞貝洋一
    • Organizer
      日本遺伝学会第94回大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] エピゲノム可塑性によるヘテロクロマチン維持機構2022

    • Author(s)
      福田渓、井上梓、志村知古、眞貝洋一
    • Organizer
      第40 回染色体ワークショップ/第21 回核ダイナミクス研究会合同集会
    • Related Report
      2022 Annual Research Report
  • [Presentation] クリーフストラ症候群モデルマウス脳内における炎症状態の解析2022

    • Author(s)
      山田亜夕美、西村佳也子、眞貝洋一
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] モデルマウスを用いたクリーフストラ症候群症状改善方法の探究2022

    • Author(s)
      山田亜夕美、西村佳也子、眞貝洋一
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヒト生殖細胞形成過程におけるトランスポゾンの制御と個体差2022

    • Author(s)
      福田渓、眞貝洋一
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] リボソームタンパク質に起きるヒスチジンメチル化修飾の機能-コドンの読み取り速度を調節し、高品質タンパク質を合成する-2022

    • Author(s)
      松浦絵里子、島津忠広、髙橋真梨、事柴芳、鈴木健裕、柏木一宏、五月女宜裕、赤壁麻依、袖岡幹子、堂前直、伊藤拓宏、眞貝洋一、岩崎信太郎
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヘテロクロマチンの核内空間制御におけるクロマチン修飾の役割2022

    • Author(s)
      福田渓、志村知古、志見剛、木村宏、眞貝 洋一
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 反復配列に引き起こされる哺乳類異所的高次クロマチン形成系の構築と解析2022

    • Author(s)
      白井温子
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 潜在的不安定性から読み解くゲノム設計原理2022

    • Author(s)
      平谷伊智朗
    • Organizer
      JST CREST・さきがけ「ゲノムスケールのDNA設計・合成による細胞制御技術の創出」研究領域 第5回領域会議
    • Related Report
      2022 Annual Research Report
  • [Presentation] Unraveling the dynamic 3D genome architecture through single-cell DNA replication profiling(1細胞全ゲノムDNA複製解析からゲノム三次元構造動態を探る)2022

    • Author(s)
      平谷伊智朗
    • Organizer
      第60回日本生物物理学会年会シンポジウム「先端技術と理論で迫るクロマチン機能の理解(Chromatin function as revealed by cutting-edge technique and theory)
    • Related Report
      2022 Annual Research Report
  • [Presentation] 1細胞全ゲノムDNA複製解析から探るゲノム三次元構造の発生制御2022

    • Author(s)
      平谷伊智朗
    • Organizer
      第3回ゲノム生物物理学セミナー
    • Related Report
      2022 Annual Research Report
  • [Presentation] DNA複製動態から見えた不活性X染色体三次元構造の構築原理2022

    • Author(s)
      平谷伊智朗
    • Organizer
      第5回JSTさきがけ「エピジェネティクスの制御と生命機能」終了領域研究会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 1細胞全ゲノムDNA複製解析から探るゲノム三次元構造の発生制御2022

    • Author(s)
      平谷伊智朗
    • Organizer
      国立遺伝学研究所研究会「染色体安定維持研究会」
    • Related Report
      2022 Annual Research Report
  • [Presentation] Genome-wide screening of A/B compartment regulators using a DNA replication reporter system2022

    • Author(s)
      平谷伊智朗
    • Organizer
      新学術領域研究「遺伝子制御の基盤となるクロマチンポテンシャル」第5回領域会議
    • Related Report
      2022 Annual Research Report
  • [Presentation] A genome-wide CRISPR screening reveals a role for an essential DNA replication factor in nuclear compartment segregation2022

    • Author(s)
      Oji A, Yusa K, Hiratani I
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 全ゲノムCRISPRスクリーニングで明らかになったDNA複製因子の核内構造制御における役割2022

    • Author(s)
      大字亜沙美
    • Organizer
      国立遺伝学研究所研究会「染色体安定維持研究会」
    • Related Report
      2022 Annual Research Report
  • [Presentation] 全ゲノムCRISPRスクリーニングで明らかになったDNA複製因子の核内コンパートメント制御における役割2022

    • Author(s)
      大字亜沙美
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Replication dynamics identifies the folding principles of the inactive X chromosome2022

    • Author(s)
      Poonperm R, Ichihara S, Miura H, Tanigawa A, Nagao K, Obuse C, Sado T, Hiratani I
    • Organizer
      The 45th Annual Meeting of MBSJ
    • Related Report
      2022 Annual Research Report
  • [Presentation] Cell-cycle dynamics of A/B compartment organization in mammalian cells2022

    • Author(s)
      Miura H, Tanigawa A, Oji A, Choubani L, Poonperm R, Hiratani I
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヒスチジンメチル化修飾の分子標的に関する生化学的解析2022

    • Author(s)
      渡邊優衣、島津忠広、眞貝 洋一
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 出芽酵母を用いたH3K9メチル化酵素/HP1発現による遺伝子発現への影響解析2022

    • Author(s)
      清水泰希、沖昌也、眞貝洋一
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Mitochondrial respiratory complex I failure and cellular CoQ10 deficiency in PYURF KO HeLa cells2022

    • Author(s)
      ファンチー、島津忠広、眞貝洋一
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] タンパク質ヒスチジンπ型メチル化酵素欠損マウスは胎生致死になる2022

    • Author(s)
      島津忠広、芳本玲、事柴芳、鈴木建裕、赤壁麻衣、五月女宣裕、袖岡幹子、堂前直、眞貝洋一
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] GINS4, an essential factor for DNA replication, is involved in regulating the 3D genome architecture during G1 phase2022

    • Author(s)
      Oji A, Yusa K, Hiratani I
    • Organizer
      NIG International Symposium 2022
    • Related Report
      2022 Annual Research Report
  • [Presentation] Replication dynamics identifies the folding principles of the inactive X chromosome2022

    • Author(s)
      Poonperm R, Ichihara S, Miura H, Tanigawa A, Nagao K, Obuse C, Sado T, Hiratani I
    • Organizer
      NIG international symposium 2022
    • Related Report
      2022 Annual Research Report
  • [Presentation] Replication dynamics identifies the folding principles of the inactive X chromosome2022

    • Author(s)
      Poonperm R, Ichihara S, Miura H, Tanigawa A, Nagao K, Obuse C, Sado T, Hiratani I
    • Organizer
      新学術領域・学術変革領域A合同「若手の会 2022」
    • Related Report
      2022 Annual Research Report
  • [Presentation] Integrated data science approach for understanding the 3D genome organization2022

    • Author(s)
      Miura H, Hiratani I
    • Organizer
      NIG International Symposium 2022, Chromosome Replication in the New Era; Old and New Questions in Life Science
    • Related Report
      2022 Annual Research Report
  • [Presentation] 哺乳類3Dゲノム構築原理の理解に向けた統合データサイエンス2022

    • Author(s)
      三浦尚、平谷伊智朗
    • Organizer
      2022年日本バイオインフォマティクス学会年会・第11回生命医薬情報学連合大会(IIBMP2022)
    • Related Report
      2022 Annual Research Report
  • [Presentation] H3K9 and H3K27 methylation pathways exclusively and coordinately regulate heterochromatin organization2022

    • Author(s)
      Shinkai Yoichi
    • Organizer
      The 30th Hot Spring Harbor International Symposium
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Coordinate regulation of heterochromatin organization by H3K9 and H3K27 methylation pathways2022

    • Author(s)
      Shinkai Yoichi
    • Organizer
      2022 International Symposium of the Epigenome Dynamics Control Research Center
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Establishment of the late-replicating inactive X chromosome during differentiation2022

    • Author(s)
      Poonperm Rawin
    • Organizer
      The 30th Hot Spring Harbor International Symposium
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Discovery of novel protein histidine pi-methyltransferase2021

    • Author(s)
      Shinkai Yoichi
    • Organizer
      Pacifichem 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Establishment of the late-replicating inactive X chromosome during differentiation2021

    • Author(s)
      Hiratani Ichiro
    • Organizer
      Cold Spring Harbor Laboratory Meeting on DNA Replication & Genome Maintenance
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 反復配列に引き起こされる哺乳類異所的 高次クロマチン形成系の構築と解析2021

    • Author(s)
      白井温子、眞貝洋一
    • Organizer
      トランスポゾン研究会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Reversibility of neurological phenotypes in Kleefstra syndrome model mouse by post-natal GLP supply2021

    • Author(s)
      6.Yamada A. Hirasawa T. Nishimura K. Shimura C. Kogo N. Fukuda K. Kato M. Yokomori M. Hayashi T. Umeda M. Yoshimura M. Iwakura Y. Nikaido I. Itohara S. Shinkai Y.
    • Organizer
      日本人類遺伝学会第66回大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] ゲノム三次元構造とその発生動態の理解2021

    • Author(s)
      三浦尚
    • Organizer
      神戸大学大学院医学研究科シグナル伝達医学研究展開センター(CSMI)ワークショプEmergence Conference
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 1細胞全ゲノムDNA複製解析法scRepli-seqを用いたマウス胚発生初期の染色体三次元構造の予測2021

    • Author(s)
      高橋沙央里
    • Organizer
      第6回兵庫県立こども病院&理化学研究所BDRサテライトセミナー
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] DNA複製タイミング制御因子の全ゲノムスクリーニングからゲノム三次元構造制御を理解する2021

    • Author(s)
      平谷伊智朗
    • Organizer
      国立遺伝学研究所研究会「染色体安定維持研究会」
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Exploring the developmental regulation of 3D genome organization through single-cell DNA replication profiling2021

    • Author(s)
      Hiratani Ichiro
    • Organizer
      第18回幹細胞シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] METTL18-mediated histidine methylation on ribosome protein modulates tyrosine translation for proteostasis maintenance2021

    • Author(s)
      12.Matsuura-Suzuki E. Shimazu T. Takahashi M. Dohmae N. Ito T. Shinkai Y. Iwasaki S.
    • Organizer
      第22回日本RNA学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 抑制性クロマチン修飾による核内高次クロマチン構造制御2021

    • Author(s)
      福田渓、志見剛、志村知古、木村宏、眞貝洋一
    • Organizer
      第39回 染色体ワークショップ・第19回 核ダイナミクス研究会
    • Related Report
      2021 Annual Research Report
  • [Presentation] DNA複製タイミング可視化システムを利用したゲノム三次元構造制御因子の網羅的同定と機能解析2021

    • Author(s)
      大字亜沙美、遊佐宏介、平谷伊智朗
    • Organizer
      第39回染色体ワークショップ・第19回核ダイナミクス研究会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 潜在的不安定性から読み解くゲノム設計原理2021

    • Author(s)
      平谷伊智朗
    • Organizer
      JST CREST・さきがけ「ゲノムスケールのDNA設計・合成による細胞制御技術の創出」研究領域 Zoomオンラインミーティング
    • Related Report
      2021 Annual Research Report
  • [Presentation] 潜在的不安定性から読み解くゲノム設計原理2021

    • Author(s)
      平谷伊智朗
    • Organizer
      JST CREST・さきがけ「ゲノムスケールのDNA設計・合成による細胞制御技術の創出」研究領域 第4回領域会議
    • Related Report
      2021 Annual Research Report
  • [Presentation] Establishment of the late-replicating inactive X chromosome during differentiation2021

    • Author(s)
      Poonperm R, Tanigawa A, Ichihara S, Sado T, Hiratani I.
    • Organizer
      第26回DNA複製・組換え・修復ワークショップ
    • Related Report
      2021 Annual Research Report
  • [Presentation] マウスの体細胞型DNA複製タイミングプログラムは4細胞期に確立する2021

    • Author(s)
      高橋沙央里、京極博久、三浦尚、柴田隆豊、林哲太郎、芳村美佳、長尾恒治、小布施力史、二階堂愛、竹林慎一郎、北島智也、平谷伊智朗
    • Organizer
      第26回DNA複製・組換え・修復ワークショップ
    • Related Report
      2021 Annual Research Report
  • [Presentation] DNA複製タイミング可視化レポーターシステムを利用したゲノム三次元構造制御因子の網羅的同定2021

    • Author(s)
      大字亜沙美、遊佐宏介、平谷伊智朗
    • Organizer
      第26回DNA複製・組換え・修復ワークショップ
    • Related Report
      2021 Annual Research Report
  • [Presentation] Unraveling the dynamic 3D genome architecture through single-cell DNA replication profiling2021

    • Author(s)
      平谷伊智朗
    • Organizer
      新学術領域研究「遺伝子制御の基盤となるクロマチンポテンシャル」Chromatin Potential Pitch Seminar
    • Related Report
      2021 Annual Research Report
  • [Presentation] METTL18-mediated histidine methylation on ribosome protein modulates tyrosine translation for proteostasis maintenance.2021

    • Author(s)
      Matsuura-Suzuki E. Shimazu T. Takahashi M. Dohmae N. Ito T. Shinkai Y. Iwasaki S.
    • Organizer
      RNA2021
    • Related Report
      2021 Annual Research Report
  • [Presentation] 自発運動によるクリーフストラ症候群脳神経症状の改善効果2021

    • Author(s)
      山田亜夕美、西村佳也子、眞貝洋一
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] マウス細胞における異所的へテロクロマチン形成系の構築2021

    • Author(s)
      宮野可菜, 白井温子, 眞貝洋一, 大関淳一郎, 舛本寛, 中山学, 阿部訓也, 鈴木伸之介
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Establishment of the late-replicating inactive X chromosome during differentiation2021

    • Author(s)
      Poonperm R, Tanigawa A, Miura H, Ichihara S, Sado T, Hiratani I
    • Organizer
      第39回染色体ワークショップ・第19回核ダイナミクス研究会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Integrative data analysis approach to understand the developmental dynamics of the chromosome organization and DNA replication timing2021

    • Author(s)
      Miura H, Takahashi S, Poonperm R, Tanigawa A, Shibata T, Takebayashi SI, Hiratani I
    • Organizer
      Cold Spring Harbor Laboratory Meeting on DNA Replication & Genome Maintenance
    • Related Report
      2021 Annual Research Report
  • [Presentation] Single-cell genome-wide DNA replication profiling of early embryonic development in mice2021

    • Author(s)
      Takahashi S, Miura H, Shibata T, Kyogoku H, Hayashi T, Yoshimura M, Nagao K, Obuse C, Nikaido I, Kitajima TS, Takebayashi SI, Hiratani I
    • Organizer
      Cold Spring Harbor Laboratory Meeting on DNA Replication & Genome Maintenance
    • Related Report
      2021 Annual Research Report
  • [Presentation] 反復配列に引き起こされる哺乳類異所的高次クロマチン形成系の構築と解析2021

    • Author(s)
      白井温子、大関淳一、舛本寛、中山学、眞貝洋一
    • Organizer
      第38回染色体WS・第19回核ダイナミクス研究会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Between H3K9 and DNA methylations-the crosstalk in two main gene silencing pathways2021

    • Author(s)
      Fang Qi
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] H3K9メチル化を介した遺伝子発現抑制機構の解明2021

    • Author(s)
      清水泰希、沖昌也、眞貝洋一
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 反復配列に引き起こされる哺乳類異所的高次クロマチン形成系の構築と解析2021

    • Author(s)
      白井温子、大関淳一、舛本寛、中山学、眞貝洋一
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Compartment-dependent regulation of heterochromatin formation in mouse embryonic stem cells2021

    • Author(s)
      福田渓、三浦尚、谷川明恵、平谷伊智朗、眞貝洋一
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] クロマチンリモデリング酵素HELLSとCDCA7タンパク質との機能的相互作用2021

    • Author(s)
      新海暁男
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 1細胞全ゲノムDNA複製解析から探るゲノム三次元構造の発生制御(Exploring the developmental regulation of 3D genome organization through single-cell DNA replication profiling)2021

    • Author(s)
      平谷伊智朗
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 4Dヌクレオーム研究の現状-ヌクレオーム研究のスクリーニング計画の紹介から分野の将来展望まで-2021

    • Author(s)
      平谷伊智朗
    • Organizer
      大塚製薬株式会社・社内講演会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Exploring the developmental regulation of 3D genome organization through single-cell DNA replication profiling.2021

    • Author(s)
      平谷伊智朗
    • Organizer
      The 15th Asia Epigenomics Meeting Online (Singapore)
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Unraveling the genome organization through DNA replication studies.2021

    • Author(s)
      平谷伊智朗
    • Organizer
      The 3rd Kobe-RIKEN BDR Joint Symposium - Development and Disease
    • Related Report
      2020 Annual Research Report
  • [Presentation] 1細胞からの全ゲノムDNA複製解析を可能にするscRepli-seqの紹介2021

    • Author(s)
      平谷伊智朗
    • Organizer
      東京医科歯科大学・トランスオミクス講習会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 潜在的不安定性から読み解くゲノム設計原理2021

    • Author(s)
      平谷伊智朗
    • Organizer
      JST CREST・さきがけ「ゲノムスケールのDNA設計・合成による細胞制御技術の創出」研究領域 第3回 合同キックオフ及び領域会議
    • Related Report
      2020 Annual Research Report
  • [Presentation] Dissecting the 3D genome architecture dynamics through single-cell DNA replication profiling.2020

    • Author(s)
      平谷伊智朗
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 1細胞全ゲノムDNA複製解析法scRepli-seqを用いたゲノム三次元構造の発生制御の解析(Unraveling the dynamic 3D genome architecture through single-cell DNA replication profiling)2020

    • Author(s)
      平谷伊智朗
    • Organizer
      日本人類遺伝学会第65回大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] DNA複製レポーターシステムを用いたA/Bコンパートメント制御因子のゲノムワイドスクリーニング(Genome-wide screening of A/B compartment regulators using a DNA replication reporter system)2020

    • Author(s)
      平谷伊智朗
    • Organizer
      新学術領域研究「遺伝子制御の基盤となるクロマチンポテンシャル」第3回領域会議
    • Related Report
      2020 Annual Research Report
  • [Presentation] エピゲノムによる転写抑制機構の解明2019

    • Author(s)
      眞貝洋一
    • Organizer
      第37回染色体ワークショップ・第18回核ダイナミクス研究会
    • Related Report
      2019 Annual Research Report
  • [Presentation] ゲノム三次元構造の発生制御とその分子基盤2019

    • Author(s)
      平谷伊智朗
    • Organizer
      国立遺伝学研究所研究会「染色体安定維持研究会」
    • Related Report
      2019 Annual Research Report
  • [Presentation] エピゲノム操作による生命機能への介入の可能性2019

    • Author(s)
      眞貝洋一
    • Organizer
      第112回日本繁殖生物学会大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Unraveling the dynamic 3D genome architecture through single-cell DNA replication profiling2019

    • Author(s)
      平谷伊智朗
    • Organizer
      日本遺伝学会大91回年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Unraveling the dynamic 3D genome architecture through single-cell DNA replication profiling2019

    • Author(s)
      平谷伊智朗
    • Organizer
      シングルセルゲノミクス研究会2019
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] METTL9はタンパク質のヒスチジン残基をπ-メチル化する酵素である2019

    • Author(s)
      島津忠弘、鈴木健裕、赤壁麻衣、五月女宜裕、 袖岡幹子、堂前直、 眞貝 洋一
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 1細胞全ゲノムDNA複製解析法を用いたゲノム三次元構造の発生制御の解析2019

    • Author(s)
      平谷伊智朗
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Development of a DNA replication reporter system for genome-wide screening of A/B compartment regulators.2019

    • Author(s)
      大字亜沙美、平谷伊智朗
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Single-cell DNA replication profiling reveals the principles of 3D genome organization dynamics at the megabase scale2019

    • Author(s)
      Hiratani I, Miura H, Takahashi S, Shibata T, Poonperm R, Tanigawa A, Nagao K, Obuse C, Takebayashi SI
    • Organizer
      Gordon Research Conference on Genome Architecture in Cell Fate and Disease “The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype.
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 1細胞全ゲノムDNA複製タイミング解析手法とマウス初期胚解析への応用に向けて2019

    • Author(s)
      高橋沙央里、三浦尚、柴田隆豊、長尾恒治、小布施力史、竹林慎一郎、平谷伊智朗
    • Organizer
      第19回蛋白質科学会年会・第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Single-cell DNA replication sequencing and its application to studies of early mouse embryonic development.2019

    • Author(s)
      高橋沙央里、三浦尚、柴田隆豊、長尾恒治、小布施力史、竹林慎一郎、平谷伊智朗
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Kleefstra症候群モデルマウスを用いた神経症状発症機構の解明2019

    • Author(s)
      山田亜夕美、西村佳也子、志村知古、平澤孝枝、眞貝洋一
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Toward biochemical study of the regulation of the de novo DNA methylation.2019

    • Author(s)
      新海暁男、眞貝洋一
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] モデルマウスを用いたKleefstra症候群の神経症状発症機構の解明2019

    • Author(s)
      山田亜夕美、西村佳也子、志村知古、平澤孝枝、眞貝洋一
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 反復配列に引き起こされる哺乳類異所的高次クロマチン形成2019

    • Author(s)
      白井温子、大関淳一郎、舛本寛、中山学、眞貝洋一
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Uncovering the molecular basis of glutamine methylation of mitochondrial translation release factors2019

    • Author(s)
      Fang Q, Shinkai Y
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Single-cell DNA replication profiling reveals spatiotemporal developmental dynamics of chromosome organization2019

    • Author(s)
      Hiratani I, Miura H, Takahashi S, Shibata T, Poonperm R, Tanigawa A, Nagao K, Obuse C, Takebayashi SI
    • Organizer
      Cold Spring Harbor Meeting on Eukaryotic DNA Replication & Genome Maintenance
    • Related Report
      2019 Annual Research Report
  • [Presentation] Single-cell DNA replication profiling identifies spatiotemporal dynamics of chromosome organization2019

    • Author(s)
      Miura H, Takahashi S, Poonperm R, Tanigawa A, Takebayashi SI, Hiratani I
    • Organizer
      Gordon Research Conference on Genome Architecture in Cell Fate and Disease “The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype.”
    • Related Report
      2019 Annual Research Report
  • [Presentation] Single-cell DNA replication profiling reveals the principles of 3D genome organization dynamics at the megabase scale2019

    • Author(s)
      Hiratani I, Miura H, Takahashi S, Shibata T, Poonperm R, Tanigawa A, Nagao K, Obuse C, Takebayashi SI
    • Organizer
      Gordon Research Conference on Genome Architecture in Cell Fate and Disease “The Eukaryotic Genome in 4 Dimensions: Integrative Approaches to Bridging Genotype and Phenotype.”
    • Related Report
      2019 Annual Research Report
  • [Presentation] Single-cell DNA replication sequencing and its application to studies of early mouse embryonic development2019

    • Author(s)
      高橋沙央里、三浦尚、柴田隆豊、長尾恒治、小布施力史、竹林慎一郎、平谷伊智朗
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Smchd1 is required for maintaining late replication of the inactive X chromosome2019

    • Author(s)
      Rawin Poonperm、三浦尚、佐渡敬、平谷伊智朗
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Setdb1-Atf7ip 複合体による転写抑制機構2019

    • Author(s)
      眞貝洋一
    • Organizer
      研究会「染色体研究の最前線2019」
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] H3K9メチル化酵素によるレトロウイルス転写抑制の分子機構2018

    • Author(s)
      眞貝洋一
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] エピゲノムの確立・維持と可変・可塑性のダイナミクス2018

    • Author(s)
      眞貝洋一
    • Organizer
      日本生化学会北陸支部第36回大会シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 内在性レトロウイルスの活性化機構と自然免疫反応2018

    • Author(s)
      竹本 経緯子、加藤 雅紀、眞貝 洋一
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Kleefstra症候群の後天的エピゲノム改変による治療可能性の探求と発症機構の解明2018

    • Author(s)
      山田亜夕美、西村佳也子、志村知古、平澤孝枝、眞貝洋一
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] G9aは細胞周期のどのタイミングでヒストンH3K9をメチル化できるのか?2018

    • Author(s)
      福田 幹子、阪上-沢野 朝子、宮脇 敦史、志村 知古、立花 誠、眞貝 洋一
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Kleefstra症候群モデルマウスの自閉症様表現型は後天的エピゲノム改変により回復できるか-そのタイミングと効果-2018

    • Author(s)
      横森 将輝、加藤 まどか、山田 亜夕美、西村 佳也子、眞貝 洋一、平澤 孝枝
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Single-cell DNA replication timing profiling and 3D genome organization dynamics during development.2018

    • Author(s)
      Miura H, Takahashi S, Shibata T, Nagao K, Obuse C, Takebayashi S-i, Hiratani I.
    • Organizer
      Cold Spring Harbor Laboratory Meeting on Nuclear Organization & Function.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Single-cell DNA replication timing profiling and 3D genome organization dynamics during development.2018

    • Author(s)
      Miura H, Takahashi S, Shibata T, Poonperm R, Nagao K, Obuse C, Takebayashi S-i, Hiratani I.
    • Organizer
      EMBO Symposia 2018: Principles of Chromosome Structure and Function.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Single-cell DNA replication timing profiling and 3D genome organization dynamics during development.2018

    • Author(s)
      Miura H, Takahashi S, Shibata T, Poonperm R, Nagao K, Obuse C, Takebayashi S-i, Hiratani I.
    • Organizer
      Cold Spring Harbor Laboratory Meeting on Epigenetics & Chromatin.
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 1細胞ゲノムワイドDNA複製解析から見えるゲノム高次構造の発生制御2018

    • Author(s)
      平谷伊智朗
    • Organizer
      第91回日本生化学会大会シンポジウム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Remarks] 精子のエピゲノムは人それぞれ-生殖細胞におけるレトロエレメントの不完全制御-

    • URL

      https://www.riken.jp/press/2022/20220413_2/index.html

    • Related Report
      2022 Annual Research Report 2021 Annual Research Report
  • [Remarks] エピゲノム異常に起因する脳機能不全の治療の可能性-クリーフストラ症候群の治療法開発に前進-

    • URL

      https://www.riken.jp/press/2021/20210706_2/index.html

    • Related Report
      2021 Annual Research Report
  • [Remarks] ヒストンメチル化による自閉症の新しいメカニズムを発見-自閉スペクトラム症の治療薬開発に役立つ可能性-

    • URL

      https://www.riken.jp/press/2021/20210715_2/index.html

    • Related Report
      2021 Annual Research Report
  • [Remarks] A genetic brain disease reversed after birth

    • URL

      https://www.riken.jp/en/news_pubs/research_news/pr/2021/20210706_2/index.html

    • Related Report
      2021 Annual Research Report
  • [Remarks] インフォマティクス初心者でも1細胞全ゲノムDNA解析が可能に

    • URL

      http://www.bdr.riken.jp/jp/news/2020/research021.html

    • Related Report
      2020 Annual Research Report
  • [Remarks] Research News

    • Related Report
      2019 Annual Research Report
  • [Remarks] 研究最前線「染色体の形が細胞の個性を生む」

    • Related Report
      2019 Annual Research Report
  • [Remarks] Research News

    • Related Report
      2019 Annual Research Report
  • [Remarks] ゲノムDNAの立体構造から見えた乳がん細胞の弱点 -再発乳がんの治療に新たな道-

    • Related Report
      2019 Annual Research Report
  • [Remarks] 染色体の形は細胞分化と共にこう変わる-分化に伴うゲノムの三次元構造変化を1細胞レベルで明らかに-

    • Related Report
      2019 Annual Research Report

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Published: 2018-07-20   Modified: 2024-01-30  

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