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Elucidation of chromatin potential through the analysis of nucleosome structure and dynamics

Planned Research

Project AreaChromatin potential for gene regulation
Project/Area Number 18H05534
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

Kurumizaka Hitoshi  東京大学, 定量生命科学研究所, 教授 (80300870)

Co-Investigator(Kenkyū-buntansha) 杉山 正明  京都大学, 複合原子力科学研究所, 教授 (10253395)
河野 秀俊  国立研究開発法人量子科学技術研究開発機構, 量子生命科学研究所, プロジェクトディレクター (40291918)
Project Period (FY) 2018-06-29 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥207,870,000 (Direct Cost: ¥159,900,000、Indirect Cost: ¥47,970,000)
Fiscal Year 2022: ¥37,440,000 (Direct Cost: ¥28,800,000、Indirect Cost: ¥8,640,000)
Fiscal Year 2021: ¥37,440,000 (Direct Cost: ¥28,800,000、Indirect Cost: ¥8,640,000)
Fiscal Year 2020: ¥37,440,000 (Direct Cost: ¥28,800,000、Indirect Cost: ¥8,640,000)
Fiscal Year 2019: ¥37,440,000 (Direct Cost: ¥28,800,000、Indirect Cost: ¥8,640,000)
Fiscal Year 2018: ¥58,110,000 (Direct Cost: ¥44,700,000、Indirect Cost: ¥13,410,000)
Keywordsクロマチン / エピジェネティクス / ヌクレオソーム / ヒストン / クロマチン転写 / クロマチン再構成 / クライオ電子顕微鏡 / 遺伝子発現 / 転写 / 遺伝情報複製・再編
Outline of Final Research Achievements

In eukaryotes, genomic DNA is compacted into chromatin with nuclear nucleosome-binding proteins. Recent studies suggest that diversity of chromatin structure and dynamics are crucial for gene regulation. In this study, we aimed to understand diverse chromatin structures and dynamics, which are regulated by a variety of epigenetic factors. We reconstituted chromatin in vitro and performed structural and biochemical analyses. We then determined structures of various nucleosomes, and their complexes with chromatin binding proteins. Furthermore, we elucidated the mechanisms by which transcription elongation complexes regulate transcription in chromatin.

Academic Significance and Societal Importance of the Research Achievements

細胞核内における多様なクロマチン構造とそのダイナミクスの制御機構の解明は、遺伝子発現制御機構の理解にとどまらず、細胞の運命決定や個体への発生制御のメカニズムの理解においても重要であることが明らかになってきた。そのような背景から、本研究は様々な研究分野に対して大きな波及効果を持つと考えられる。また、クロマチン制御の破綻は、がんをはじめとする様々な疾病と密接に関係していることが明らかになっている。このことから、本研究の成果を基礎として、疾患の発生機序解明や新規治療薬の開発研究などにおいても波及効果が期待される。以上のことから、本研究で得られた成果は学術的にも社会的にも意義深いものであると考える。

Report

(6 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • 2018 Annual Research Report
  • Research Products

    (287 results)

All 2023 2022 2021 2020 2019 2018 Other

All Int'l Joint Research (9 results) Journal Article (91 results) (of which Int'l Joint Research: 29 results,  Peer Reviewed: 88 results,  Open Access: 72 results) Presentation (176 results) (of which Int'l Joint Research: 37 results,  Invited: 53 results) Book (9 results) Remarks (2 results)

  • [Int'l Joint Research] Stony Brook University/The University of Colorado(米国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] Institut Laue-Langevin(フランス)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] National University of Ireland Galway(アイルランド)

    • Related Report
      2021 Annual Research Report
  • [Int'l Joint Research] NIHES/University of North Dakota/Rockefeller University(米国)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] ANSTO(オーストラリア)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] FMI(スイス)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] Colorado School of Medicine/Rockefeller Univesity/NIEHS(米国)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] Institut Laue Langevin/Curie Institute(フランス)

    • Related Report
      2019 Annual Research Report
  • [Int'l Joint Research] University of Cambridge(英国)

    • Related Report
      2019 Annual Research Report
  • [Journal Article] High-Speed Atomic Force Microscopy Reveals Spontaneous Nucleosome Sliding of H2A.Z at the Subsecond Time Scale2023

    • Author(s)
      Morioka Shin、Sato Shoko、Horikoshi Naoki、Kujirai Tomoya、Tomita Takuya、Baba Yudai、Kakuta Takahiro、Ogoshi Tomoki、Puppulin Leonardo、Sumino Ayumi、Umeda Kenichi、Kodera Noriyuki、Kurumizaka Hitoshi、Shibata Mikihiro
    • Journal Title

      Nano Letters

      Volume: 23 Issue: 5 Pages: 1696-1704

    • DOI

      10.1021/acs.nanolett.2c04346

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The cryo-EM structure of full-length RAD52 protein contains an undecameric ring2023

    • Author(s)
      Kinoshita Chiaki、Takizawa Yoshimasa、Saotome Mika、Ogino Shun、Kurumizaka Hitoshi、Kagawa Wataru
    • Journal Title

      FEBS Open Bio

      Volume: 13 Issue: 3 Pages: 408-418

    • DOI

      10.1002/2211-5463.13565

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural studies of functional nucleosome complexes with transacting factors2022

    • Author(s)
      KURUMIZAKA Hitoshi
    • Journal Title

      Proceedings of the Japan Academy, Series B

      Volume: 98 Issue: 1 Pages: 1-14

    • DOI

      10.2183/pjab.98.001

    • NAID

      130008140789

    • ISSN
      0386-2208, 1349-2896
    • Year and Date
      2022-01-11
    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones2022

    • Author(s)
      Fukushima Yutaro、Hatazawa Suguru、Hirai Seiya、Kujirai Tomoya、Ehara Haruhiko、Sekine Shun-ichi、Takizawa Yoshimasa、Kurumizaka Hitoshi
    • Journal Title

      The Journal of Biochemistry

      Volume: 172 Issue: 2 Pages: 79-88

    • DOI

      10.1093/jb/mvac043

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis for binding diversity of acetyltransferase p300 to the nucleosome2022

    • Author(s)
      Hatazawa Suguru、Liu Jiuyang、Takizawa Yoshimasa、Zandian Mohamad、Negishi Lumi、Kutateladze Tatiana G.、Kurumizaka Hitoshi
    • Journal Title

      iScience

      Volume: 25 Issue: 7 Pages: 104563-104563

    • DOI

      10.1016/j.isci.2022.104563

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Nucleosome Structures Built from Highly Divergent Histones: Parasites and Giant DNA Viruses2022

    • Author(s)
      Sato Shoko、Dacher Mariko、Kurumizaka Hitoshi
    • Journal Title

      Epigenomes

      Volume: 6 Issue: 3 Pages: 22-22

    • DOI

      10.3390/epigenomes6030022

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Method for Evaluating Effects of Non-coding RNAs on Nucleosome Stability2022

    • Author(s)
      Dacher Mariko、Fujita Risa、Kujirai Tomoya、Kurumizaka Hitoshi
    • Journal Title

      piRNA: Methods and Protocols, Methods in Molecular Biology

      Volume: 2509 Pages: 195-208

    • DOI

      10.1007/978-1-0716-2380-0_12

    • ISBN
      9781071623794, 9781071623800
    • Related Report
      2022 Annual Research Report
  • [Journal Article] Structural basis of nucleosome disassembly and reassembly by RNAPII elongation complex with FACT2022

    • Author(s)
      Ehara Haruhiko、Kujirai Tomoya、Shirouzu Mikako、Kurumizaka Hitoshi、Sekine Shun-ichi
    • Journal Title

      Science

      Volume: 377 Issue: 6611

    • DOI

      10.1126/science.abp9466

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis for p53 binding to its nucleosomal target DNA sequence2022

    • Author(s)
      Nishimura Masahiro、Takizawa Yoshimasa、Nozawa Kayo、Kurumizaka Hitoshi
    • Journal Title

      PNAS Nexus

      Volume: 1 Issue: 4

    • DOI

      10.1093/pnasnexus/pgac177

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-electron microscopy structure of the H3-H4 octasome: A nucleosome-like particle without histones H2A and H2B2022

    • Author(s)
      Nozawa Kayo、Takizawa Yoshimasa、Pierrakeas Leonidas、Sogawa-Fujiwara Chizuru、Saikusa Kazumi、Akashi Satoko、Luk Ed、Kurumizaka Hitoshi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 119 Issue: 45

    • DOI

      10.1073/pnas.2206542119

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis of RNA polymerase II transcription on the chromatosome containing linker histone H12022

    • Author(s)
      Hirano Rina、Ehara Haruhiko、Kujirai Tomoya、Uejima Tamami、Takizawa Yoshimasa、Sekine Shun-ichi、Kurumizaka Hitoshi
    • Journal Title

      Nature Communications

      Volume: 13 Issue: 1 Pages: 7287-7287

    • DOI

      10.1038/s41467-022-35003-z

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Efficient Multiple Domain Ligation for Proteins Using Asparaginyl Endopeptidase by Selection of Appropriate Ligation Sites Based on Steric Hindrance2022

    • Author(s)
      Okuda Aya、Shimizu Masahiro、Inoue Rintaro、Urade Reiko、Sugiyama Masaaki
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 62 Issue: 1

    • DOI

      10.1002/anie.202214412

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Extracting time series matching a small-angle X-ray scattering profile from trajectories of molecular dynamics simulations2022

    • Author(s)
      Shimizu Masahiro、Okuda Aya、Morishima Ken、Inoue Rintaro、Sato Nobuhiro、Yunoki Yasuhiro、Urade Reiko、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 9970-9970

    • DOI

      10.1038/s41598-022-13982-9

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Data Collection for Dilute Protein Solutions via a Neutron Backscattering Spectrometer2022

    • Author(s)
      Taiki Tominaga, Hiroshi Nakagawa, Masae Sahara, Takashi Oda, Rintaro Inoue and Masaaki Sugiyama
    • Journal Title

      Life

      Volume: 12 Issue: 5 Pages: 675-675

    • DOI

      10.3390/life12050675

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tracking the Structural Development of Amyloid Precursors in the Insulin B Chain and the Inhibition Effect by Fibrinogen2022

    • Author(s)
      Naoki Yamamoto, Rintaro Inoue, Yoshiteru Makino, Hiroshi Sekiguchi, Naoya Shibayama, Akira Naito, Masaaki Sugiyama, and Eri Chatani
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 126 Issue: 51 Pages: 10797-10812

    • DOI

      10.1021/acs.jpcb.2c05136

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Orchestration of Proteins in cyanobacterial Circadian Clock System 12022

    • Author(s)
      Sugiyama Masaaki、Morishima Ken、Yunoki Yasuhiro、Inoue Rintaro、Sato Nobuhiro、Yagi Hirokazu、Kato Koichi
    • Journal Title

      bioRxiv

      Volume: -

    • DOI

      10.1101/2022.08.26.505376

    • Related Report
      2022 Annual Research Report
    • Open Access
  • [Journal Article] Fly casting with ligand sliding and orientational selection supporting complex formation of a GPCR and a middle sized flexible molecule.2022

    • Author(s)
      Junichi Higo, Kota Kasahara, Gert-Jan Bekker, Benson Ma, Shun Sakuraba, Shinji Iida, Narutoshi Kamiya, Ikuo Fukuda, Hidetoshi Kono, Yoshifumi Fukunishi, Haruki Nakamura
    • Journal Title

      Scientific Reports

      Volume: 12 Issue: 1 Pages: 13792-13792

    • DOI

      10.1038/s41598-022-17920-7

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Free Energy Landscape of H2A-H2B Displacement From Nucleosome2022

    • Author(s)
      Ishida Hisashi、Kono Hidetoshi
    • Journal Title

      Journal of Molecular Biology

      Volume: 434 Issue: 16 Pages: 167707-167707

    • DOI

      10.1016/j.jmb.2022.167707

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chemical catalyst/protein hybrid as artificial histone-modifying enzyme for epigenome manipulation2022

    • Author(s)
      Fujimura Akiko、Ishida Hisashi、Nozaki Tamiko、Azumaya Yuto、Ishiguro Tadashi、Kujirai Tomoya、Kurumizaka Hitoshi、Kono Hidetoshi、Yamatsugu Kenzo、Kawashima Shigehiro、Kanai Motomu
    • Journal Title

      ChemRxiv

      Volume: -

    • DOI

      10.26434/chemrxiv-2022-xt610

    • Related Report
      2022 Annual Research Report
    • Open Access
  • [Journal Article] 多分散・多成分溶液中の生体高分子の構造解析のための小角散乱と各種成分分離手法の複合的アプローチ2022

    • Author(s)
      守島健、佐藤信浩、井上倫太郎、杉山正明
    • Journal Title

      波紋

      Volume: 32 Pages: 16-20

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 時計タンパク質複合体の構造解析を通して明らかとなった中性子小角散乱の強み2022

    • Author(s)
      柚木康弘、松本淳、守島健、Martel Anne、Porcar Lionel、佐藤信浩、與語理那、富永大輝、矢木真穂、井上倫太郎、河野秀俊、矢木宏和、加藤晃一、杉山正明
    • Journal Title

      波紋

      Volume: 32 Pages: 158-164

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] RNAPII driven post-translational modifications of nucleosomal histones2022

    • Author(s)
      Chan Justin、Kumar Amarjeet、Kono Hidetoshi
    • Journal Title

      Trends in Genetics

      Volume: 38 Issue: 10 Pages: 1076-1095

    • DOI

      10.1016/j.tig.2022.04.010

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] HNF1A POU Domain Mutations Found in Japanese Liver Cancer Patients Cause Downregulation of HNF4A Promoter Activity with Possible Disruption in Transcription Networks2022

    • Author(s)
      Haque Effi、Teeli Aamir Salam、Winiarczyk Dawid、Taguchi Masahiko、Sakuraba Shun、Kono Hidetoshi、Leszczynski Pawel、Pierzchala Mariusz、Taniguchi Hiroaki
    • Journal Title

      Genes

      Volume: 13 Issue: 3 Pages: 413-413

    • DOI

      10.3390/genes13030413

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Overall structure of fully assembled cyanobacterial KaiABC circadian clock complex by an integrated experimental-computational approach2022

    • Author(s)
      Yunoki Yasuhiro、Matsumoto Atsushi、Morishima Ken、Martel Anne、Porcar Lionel、Sato Nobuhiro、Yogo Rina、Tominaga Taiki、Inoue Rintaro、Yagi-Utsumi Maho、Okuda Aya、Shimizu Masahiro、Urade Reiko、Terauchi Kazuki、Kono Hidetoshi、Yagi Hirokazu、Kato Koichi、Sugiyama Masaaki
    • Journal Title

      Communications Biology

      Volume: 5 Issue: 1 Pages: 184-184

    • DOI

      10.1038/s42003-022-03143-z

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural insight into replicative helicase loading in Escherichia coli2022

    • Author(s)
      Horikoshi Naoki、Kurumizaka Hitoshi
    • Journal Title

      The Journal of Biochemistry

      Volume: - Issue: 6 Pages: 605-607

    • DOI

      10.1093/jb/mvac023

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] NRF2 DLG Domain Mutations Identified in Japanese Liver Cancer Patients Affect the Transcriptional Activity in HCC Cell Lines2021

    • Author(s)
      Haque Effi、Smiech Magdalena、Luczynska Kamila、Bouchard Marie France、Viger Robert、Kono Hidetoshi、Pierzchala Mariusz、Taniguchi Hiroaki
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 22 Issue: 10 Pages: 5296-5296

    • DOI

      10.3390/ijms22105296

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The N-terminal Tails of Histones H2A and H2B Adopt Two Distinct Conformations in the Nucleosome with Contact and Reduced Contact to DNA2021

    • Author(s)
      Ohtomo Hideaki、Kurita Jun-ichi、Sakuraba Shun、Li Zhenhai、Arimura Yasuhiro、Wakamori Masatoshi、Tsunaka Yasuo、Umehara Takashi、Kurumizaka Hitoshi、Kono Hidetoshi、Nishimura Yoshifumi
    • Journal Title

      Journal of Molecular Biology

      Volume: 433 Issue: 15 Pages: 167110-167110

    • DOI

      10.1016/j.jmb.2021.167110

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis of the regulation of the normal and oncogenic methylation of nucleosomal histone H3 Lys36 by NSD22021

    • Author(s)
      Sato Ko、Kumar Amarjeet、Hamada Keisuke、Okada Chikako、Oguni Asako、Machiyama Ayumi、Sakuraba Shun、Nishizawa Tomohiro、Nureki Osamu、Kono Hidetoshi、Ogata Kazuhiro、Sengoku Toru
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 6605-6605

    • DOI

      10.1038/s41467-021-26913-5

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Interplay among transacting factors around promoter in the initial phases of transcription2021

    • Author(s)
      Kumar Amarjeet、Chan Justin、Taguchi Masahiko、Kono Hidetoshi
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 71 Pages: 7-15

    • DOI

      10.1016/j.sbi.2021.04.008

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Sequence-dependent nucleosome formation in trinucleotide repeats evaluated by in vivo chemical mapping2021

    • Author(s)
      Koji Katsumata, Yuichi Ichikawa, Tomohiro Fuse, Hitoshi Kurumizaka, Akio Yanagida , Takeshi Urano, Hiroaki Kato, Mitsuhiro Shimizu
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 556 Pages: 179-184

    • DOI

      10.1016/j.bbrc.2021.03.155

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chromatin structure-dependent histone incorporation revealed by a genome-wide deposition assay2021

    • Author(s)
      Hiroaki Tachiwana, Mariko Dacher, Kazumitsu Maehara, Akihito Harada, Yosuke Seto, Ryohei Katayama, Yasuyuki Ohkawa, Hiroshi Kimura, Hitoshi Kurumizaka, Noriko Saitoh
    • Journal Title

      eLife

      Volume: 10

    • DOI

      10.7554/elife.66290

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural basis for DNA sequence recognition by pioneer factors in nucleosomes.2021

    • Author(s)
      Kagawa W, Kurumizaka H.
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 71 Pages: 59-64

    • DOI

      10.1016/j.sbi.2021.05.011

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cryo-EM structure of the nucleosome core particle containing <i>Giardia lamblia</i> histones2021

    • Author(s)
      Sato Shoko、Takizawa Yoshimasa、Hoshikawa Fumika、Dacher Mariko、Tanaka Hiroki、Tachiwana Hiroaki、Kujirai Tomoya、Iikura Yukari、Ho Cheng-Han、Adachi Naruhiko、Patwal Indu、Flaus Andrew、Kurumizaka Hitoshi
    • Journal Title

      Nucleic Acids Research

      Volume: 49 Issue: 15 Pages: 8934-8946

    • DOI

      10.1093/nar/gkab644

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Modeling population size independent tissue epigenomes by ChIL‐seq with single thin sections2021

    • Author(s)
      Maehara Kazumitsu、Tomimatsu Kosuke、Harada Akihito、Tanaka Kaori、Sato Shoko、Fukuoka Megumi、Okada Seiji、Handa Tetsuya、Kurumizaka Hitoshi、Saitoh Noriko、Kimura Hiroshi、Ohkawa Yasuyuki
    • Journal Title

      Molecular Systems Biology

      Volume: 17 Issue: 11 Pages: 8934-8946

    • DOI

      10.15252/msb.202110323

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant2021

    • Author(s)
      Hirai Seiya、Tomimatsu Kosuke、Miyawaki-Kuwakado Atsuko、Takizawa Yoshimasa、Komatsu Tetsuro、Tachibana Taro、Fukushima Yutaro、Takeda Yasuko、Negishi Lumi、Kujirai Tomoya、Koyama Masako、Ohkawa Yasuyuki、Kurumizaka Hitoshi
    • Journal Title

      Nucleic Acids Research

      Volume: 50 Issue: 1 Pages: 72-91

    • DOI

      10.1093/nar/gkab1137

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Organoruthenium-Catalyzed Chemical Protein Synthesis to Elucidate the Functions of Epigenetic Modifications on Heterochromatin Factors2021

    • Author(s)
      Kamo, N.; Kujirai, T.; Kurumizaka, H.; Murakami, H.; Hayashi, G.; Okamoto, A.
    • Journal Title

      Chem. Sci.

      Volume: 12 Issue: 16 Pages: 5926-5937

    • DOI

      10.1039/d1sc00731a

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Solution structure of multi-domain protein ER-60 studied by aggregation-free SAXS and coarse-grained-MD simulation2021

    • Author(s)
      Okuda Aya、Shimizu Masahiro、Morishima Ken、Inoue Rintaro、Sato Nobuhiro、Urade Reiko、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1-13

    • DOI

      10.1038/s41598-021-85219-0

    • NAID

      120006997066

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A feasibility study of inverse contrast-matching small-angle neutron scattering method combined with size exclusion chromatography using antibody interactions as model systems2021

    • Author(s)
      Sato Nobuhiro、Yogo Rina、Yanaka Saeko、Martel Anne、Porcar Lionel、Morishima Ken、Inoue Rintaro、Tominaga Taiki、Arimori Takao、Takagi Junichi、Sugiyama Masaaki、Kato Koichi
    • Journal Title

      The Journal of Biochemistry

      Volume: 0 Issue: 6 Pages: 1-8

    • DOI

      10.1093/jb/mvab012

    • NAID

      40022687772

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] H4K20me1 and H3K27me3 are concurrently loaded onto the inactive X chromosome but dispensable for inducing gene silencing2021

    • Author(s)
      Tjalsma Sjoerd J D、Hori Mayako、Sato Yuko、Bousard Aurelie、Ohi Akito、Raposo Ana Claudia、Roensch Julia、Le Saux Agnes、Nogami Jumpei、Maehara Kazumitsu、Kujirai Tomoya、Handa Tetsuya、Bages‐Arnal Sandra、Ohkawa Yasuyuki、Kurumizaka Hitoshi、da Rocha Simao Teixeira、Zylicz Jan J、Kimura Hiroshi、Heard Edith
    • Journal Title

      EMBO reports

      Volume: 22 Issue: 3

    • DOI

      10.15252/embr.202051989

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      2020 Annual Research Report
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  • [Journal Article] Sequence-dependent Hydration Water Dynamics of Dodecameric DNA2021

    • Author(s)
      Nakagawa Hiroshi、Yonetani Yoshiteru、Nakajima Kenji、Ohira-Kawamura Seiko、Kikuchi Tatsuya、Inamura Yasuhiro、Kataoka Mikio、Kono Hidetoshi
    • Journal Title

      Proceedings of the J-PARC Symposium 2019, JPS

      Volume: 33 Pages: 011101-011101

    • DOI

      10.7566/jpscp.33.011101

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      2020 Annual Research Report
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  • [Journal Article] Cryo‐EM structure of the CENP‐A nucleosome in complex with phosphorylated CENP‐C2021

    • Author(s)
      Ariyoshi Mariko、Makino Fumiaki、Watanabe Reito、Nakagawa Reiko、Kato Takayuki、Namba Keiichi、Arimura Yasuhiro、Fujita Risa、Kurumizaka Hitoshi、Okumura Ei‐ichi、Hara Masatoshi、Fukagawa Tatsuo
    • Journal Title

      The EMBO Journal

      Volume: 40 Issue: 5 Pages: 1-20

    • DOI

      10.15252/embj.2020105671

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      2020 Annual Research Report
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  • [Journal Article] Torsional stress can regulate the unwrapping of two outer half superhelical turns of nucleosomal DNA2021

    • Author(s)
      Ishida Hisashi、Kono Hidetoshi
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 7

    • DOI

      10.1073/pnas.2020452118

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      2020 Annual Research Report
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  • [Journal Article] Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome2021

    • Author(s)
      Rina Hirano, Yasuhiro Arimura, Tomoya Kujirai, Mikihiro Shibata, Aya Okuda, Ken Morishima, Rintaro Inoue, Masaaki Sugiyama, Hitoshi Kurumizaka
    • Journal Title

      Communications Biology

      Volume: 4 Issue: 1 Pages: 1-11

    • DOI

      10.1038/s42003-021-01707-z

    • NAID

      120006960298

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      2020 Annual Research Report
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  • [Journal Article] Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase2021

    • Author(s)
      Ho Cheng-Han、Takizawa Yoshimasa、Kobayashi Wataru、Arimura Yasuhiro、Kimura Hiroshi、Kurumizaka Hitoshi
    • Journal Title

      Life Science Alliance

      Volume: 4 Issue: 4 Pages: e202000919-e202000919

    • DOI

      10.26508/lsa.202000919

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Deuteration Aiming for Neutron Scattering2021

    • Author(s)
      Okuda Aya、Inoue Rintaro、Morishima Ken、Saio Tomohide、Yunoki Yasuhiro、Yagi-Utsumi Maho、Yagi Hirokazu、Shimizu Masahiro、Sato Nobuhiro、Urade Reiko、Kato Koichi、Sugiyama Masaaki
    • Journal Title

      Biophysics and Physicobiology

      Volume: 18 Issue: 0 Pages: 16-27

    • DOI

      10.2142/biophysico.bppb-v18.003

    • NAID

      130008000165

    • ISSN
      2189-4779
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Live-cell epigenome manipulation by synthetic histone acetylation catalyst system2021

    • Author(s)
      Fujiwara Yusuke、Yamanashi Yuki、Fujimura Akiko、Sato Yuko、Kujirai Tomoya、Kurumizaka Hitoshi、Kimura Hiroshi、Yamatsugu Kenzo、Kawashima Shigehiro A.、Kanai Motomu
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Issue: 4

    • DOI

      10.1073/pnas.2019554118

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      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Elucidation of the mechanism of subunit exchange in αB crystallin oligomers2021

    • Author(s)
      Inoue Rintaro、Sakamaki Yusuke、Takata Takumi、Wood Kathleen、Morishima Ken、Sato Nobuhiro、Okuda Aya、Shimizu Masahiro、Urade Reiko、Fujii Noriko、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 11 Issue: 1 Pages: 1-9

    • DOI

      10.1038/s41598-021-82250-z

    • NAID

      120006956390

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      2020 Annual Research Report
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  • [Journal Article] Contributions of Histone Variants in Nucleosome Structure and Function2021

    • Author(s)
      Kurumizaka Hitoshi、Kujirai Tomoya、Takizawa Yoshimasa
    • Journal Title

      Journal of Molecular Biology

      Volume: 433 Issue: 6 Pages: 166678-166678

    • DOI

      10.1016/j.jmb.2020.10.012

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      2020 Annual Research Report
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  • [Journal Article] Dynamics of proteins with different molecular structures under solution condition2020

    • Author(s)
      Inoue Rintaro、Oda Takashi、Nakagawa Hiroshi、Tominaga Taiki、Saio Tomohide、Kawakita Yukinobu、Shimizu Masahiro、Okuda Aya、Morishima Ken、Sato Nobuhiro、Urade Reiko、Sato Mamoru、Sugiyama Masaaki
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 21678-21678

    • DOI

      10.1038/s41598-020-78311-4

    • NAID

      120007193758

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] PV1 Protein from Plasmodium falciparum Exhibits Chaperone-Like Functions and Cooperates with Hsp100s2020

    • Author(s)
      Hakamada Kazuaki、Nakamura Manami、Midorikawa Rio、Shinohara Kyosuke、Noguchi Keiichi、Nagaoka Hikaru、Takashima Eizo、Morishima Ken、Inoue Rintaro、Sugiyama Masaaki、Kawamoto Akihiro、Yohda Masafumi
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Issue: 22 Pages: 8616-8616

    • DOI

      10.3390/ijms21228616

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Acetylation-modulated communication between the H3 N-terminal tail domain and the intrinsically disordered H1 C-terminal domain2020

    • Author(s)
      Hao, F; Murphy, K. J.; Kujirai, T.; Kamo, N.; Kato, J.; Koyama, M.; Okamato, A.; Hayashi, G.; Kurumizaka, H.; Hayes, J. J.
    • Journal Title

      Nucleic Acids Res.

      Volume: 48 Issue: 20 Pages: 11510-11520

    • DOI

      10.1093/nar/gkaa949

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      2020 Annual Research Report
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  • [Journal Article] Essentiality of CENP-A Depends on Its Binding Mode to HJURP.2020

    • Author(s)
      Tetsuya Hori , JingHui Cao , Kohei Nishimura , Mariko Ariyoshi , Yasuhiro Arimura , Hitoshi Kurumizaka , Tatsuo Fukagawa
    • Journal Title

      Cell reports

      Volume: 33 Issue: 7 Pages: 108388-108388

    • DOI

      10.1016/j.celrep.2020.108388

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      2020 Annual Research Report
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  • [Journal Article] Nucleosome unwrapping and unstacking2020

    • Author(s)
      Kono Hidetoshi、Ishida Hisashi
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 64 Pages: 119-125

    • DOI

      10.1016/j.sbi.2020.06.020

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      2020 Annual Research Report
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  • [Journal Article] Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input.2020

    • Author(s)
      Tetsuya Handa, Akihito Harada, Kazumitsu Maehara, Shoko Sato, Masaru Nakao, Naoki Goto, Hitoshi Kurumizaka, Yasuyuki Ohkawa, Hiroshi Kimura.
    • Journal Title

      Nat Protoc.

      Volume: 15 Issue: 10 Pages: 3334-3360

    • DOI

      10.1038/s41596-020-0375-8

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Structural basis for the inhibition of cGAS by nucleosomes2020

    • Author(s)
      Kujirai Tomoya、Zierhut Christian、Takizawa Yoshimasa、Kim Ryan、Negishi Lumi、Uruma Nobuki、Hirai Seiya、Funabiki Hironori、Kurumizaka Hitoshi
    • Journal Title

      Science

      Volume: 370 Issue: 6515 Pages: 455-458

    • DOI

      10.1126/science.abd0237

    • Related Report
      2020 Annual Research Report
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  • [Journal Article] Interaction of the pioneer transcription factor GATA3 with nucleosomes2020

    • Author(s)
      Tanaka Hiroki、Takizawa Yoshimasa、Takaku Motoki、Kato Daiki、Kumagawa Yusuke、Grimm Sara A.、Wade Paul A.、Kurumizaka Hitoshi
    • Journal Title

      Nature Communications

      Volume: 11 Issue: 1 Pages: 4136-4136

    • DOI

      10.1038/s41467-020-17959-y

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      2020 Annual Research Report
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  • [Journal Article] Structural basis for designing an array of engrailed homeodomains2020

    • Author(s)
      Sunami Tomoko、Hirano Yu、Tamada Taro、Kono Hidetoshi
    • Journal Title

      Acta Crystallographica Section D Structural Biology

      Volume: 76 Issue: 9 Pages: 824-833

    • DOI

      10.1107/s2059798320009237

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Linker DNA and histone contributions in nucleosome binding by p532020

    • Author(s)
      Nishimura Masahiro、Arimura Yasuhiro、Nozawa Kayo、Kurumizaka Hitoshi
    • Journal Title

      The Journal of Biochemistry

      Volume: 168 Issue: 6 Pages: 669-675

    • DOI

      10.1093/jb/mvaa081

    • NAID

      40022454706

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nucleosome binding by the pioneer transcription factor OCT42020

    • Author(s)
      Echigoya Kenta、Koyama Masako、Negishi Lumi、Takizawa Yoshimasa、Mizukami Yuka、Shimabayashi Hideki、Kuroda Akari、Kurumizaka Hitoshi
    • Journal Title

      Scientific Reports

      Volume: 10 Issue: 1 Pages: 11832-11832

    • DOI

      10.1038/s41598-020-68850-1

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Integral approach to biomacromolecular structure by analytical-ultracentrifugation and small-angle scattering2020

    • Author(s)
      Morishima Ken、Okuda Aya、Inoue Rintaro、Sato Nobuhiro、Miyamoto Yosuke、Urade Reiko、Yagi-Utsumi Maho、Kato Koichi、Hirano Rina、Kujirai Tomoya、Kurumizaka Hitoshi、Sugiyama Masaaki
    • Journal Title

      Communications Biology

      Volume: 3 Issue: 1 Pages: 294-294

    • DOI

      10.1038/s42003-020-1011-4

    • NAID

      120006850271

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The N‐terminal and C‐terminal halves of histone H2A.Z independently function in nucleosome positioning and stability2020

    • Author(s)
      Sato Shoko、Tanaka Naoki、Arimura Yasuhiro、Kujirai Tomoya、Kurumizaka Hitoshi
    • Journal Title

      Genes to Cells

      Volume: 25 Issue: 8 Pages: 538-546

    • DOI

      10.1111/gtc.12791

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improved Methods for Preparing the Telomere Tethering Complex Bqt1-Bqt2 for Structural Studies2020

    • Author(s)
      Yuzurihara H, Aizawa Y, Saotome M, Ichikawa Y, Yokoyama H, Chikashige Y, Haraguchi T, Hiraoka Y, Kurumizaka H, Kagawa W
    • Journal Title

      Protein J

      Volume: - Issue: 2 Pages: 174-181

    • DOI

      10.1007/s10930-020-09887-z

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nucleosome destabilization by nuclear non-coding RNAs.2020

    • Author(s)
      †Fujita R, †Yamamoto T, Arimura Y, Fujiwara S, Tachiwana H, Ichikawa Y, Sakata S, Yang L, Maruyama R, Hamada M, Nakao M, *Saitoh N, *Kurumizaka H
    • Journal Title

      Commun Biol

      Volume: 3 Issue: 1 Pages: 60-60

    • DOI

      10.1038/s42003-020-0784-9

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Native Mass Spectrometry of Protein and DNA Complexes Prepared in Nonvolatile Buffers2020

    • Author(s)
      Saikusa Kazumi、Kato Daiki、Nagadoi Aritaka、Kurumizaka Hitoshi、Akashi Satoko
    • Journal Title

      Journal of the American Society for Mass Spectrometry

      Volume: 31 Issue: 3 Pages: 711-718

    • DOI

      10.1021/jasms.9b00145

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Studies of Overlapping Dinucleosomes in Solution2020

    • Author(s)
      Matsumoto Atsushi、Sugiyama Masaaki、Li Zhenhai、Martel Anne、Porcar Lionel、Inoue Rintaro、Kato Daiki、Osakabe Akihisa、Kurumizaka Hitoshi、Kono Hidetoshi
    • Journal Title

      Biophysical Journal

      Volume: 118 Issue: 9 Pages: 2209-2219

    • DOI

      10.1016/j.bpj.2019.12.010

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome.2020

    • Author(s)
      Yoshimasa Takizawa, Cheng-Han Ho, Hiroaki Tachiwana, Hideyuki Matsunami, Wataru Kobayashi, Midori Suzuki, Yasuhiro Arimura, Tetsuya Hori, Tatsuo Fukagawa, Melanie D Ohi, Matthias Wolf, Hitoshi Kurumizaka
    • Journal Title

      Structure

      Volume: 28 Issue: 1 Pages: 44-53

    • DOI

      10.1016/j.str.2019.10.016

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Heterochromatin protein 1 (HP1): interactions with itself and chromatin components2020

    • Author(s)
      Kumar A, *Kono H.
    • Journal Title

      Biophys Rev

      Volume: in press Issue: 2 Pages: 387-400

    • DOI

      10.1007/s12551-020-00663-y

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transcription through the nucleosome2020

    • Author(s)
      Kujirai Tomoya、Kurumizaka Hitoshi
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 61 Pages: 42-49

    • DOI

      10.1016/j.sbi.2019.10.007

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Biochemical and structural analyses of the nucleosome containing human histone H2A.J2019

    • Author(s)
      Tanaka Hiroki、Sato Shoko、Koyama Masako、Kujirai Tomoya、Kurumizaka Hitoshi
    • Journal Title

      The Journal of Biochemistry

      Volume: 167 Issue: 4 Pages: 419-427

    • DOI

      10.1093/jb/mvz109

    • NAID

      40022211009

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Incorporation and influence of Leishmania histone H3 in chromatin2019

    • Author(s)
      Dacher Mariko、Tachiwana Hiroaki、Horikoshi Naoki、Kujirai Tomoya、Taguchi Hiroyuki、Kimura Hiroshi、Kurumizaka Hitoshi
    • Journal Title

      Nucleic Acids Research

      Volume: 47 Issue: 22 Pages: 11637-11648

    • DOI

      10.1093/nar/gkz1040

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structure determination of the nucleosome core particle by selenium SAD phasing2019

    • Author(s)
      Saotome Mika、Horikoshi Naoki、Urano Kazuki、Kujirai Tomoya、Yuzurihara Hidetaka、Kurumizaka Hitoshi、Kagawa Wataru
    • Journal Title

      Acta Crystallographica Section D Structural Biology

      Volume: 75 Issue: 10 Pages: 930-936

    • DOI

      10.1107/s2059798319012713

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] H3K14 ubiquitylation promotes H3K9 methylation for heterochromatin assembly2019

    • Author(s)
      Oya Eriko、Nakagawa Reiko、Yoshimura Yuriko、Tanaka Mayo、Nishibuchi Gohei、Machida Shinichi、Shirai Atsuko、Ekwall Karl、Kurumizaka Hitoshi、Tagami Hideaki、Nakayama Jun‐ichi
    • Journal Title

      EMBO reports

      Volume: 20 Issue: 10

    • DOI

      10.15252/embr.201948111

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Biochemical analysis of nucleosome targeting by Tn5 transposase2019

    • Author(s)
      Sato S, Arimura Y, Kujirai T, Harada A, Maehara K, Nogami J, Ohkawa Y, Kurumizaka H.
    • Journal Title

      Open Biol.

      Volume: 9 Issue: 8 Pages: 190116-190116

    • DOI

      10.1098/rsob.190116

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The CHD4-related syndrome: a comprehensive investigation of theclinical spectrum, genotype-phenotype correlations, and molecular basis2019

    • Author(s)
      Weiss K, Lazar HP, Kurolap A, Martinez AF, …Kurumizaka H, Gelb BD, Baris Feldman H, Campeau PM, Muenke M, Wade PA, Lachlan K.
    • Journal Title

      Genetics in Medicine

      Volume: 22 Issue: 2 Pages: 389-397

    • DOI

      10.1038/s41436-019-0612-0

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Intrabody-based FRET probe to visualize endogenous histone acetylation2019

    • Author(s)
      Chung Chan-I、Sato Yuko、Ohmuro-Matsuyama Yuki、Machida Shinichi、Kurumizaka Hitoshi、Kimura Hiroshi、Ueda Hiroshi
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 10188-10188

    • DOI

      10.1038/s41598-019-46573-2

    • NAID

      120006936925

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure-based design of an H2A.Z.1 mutant stabilizing a nucleosome in vitro and in vivo2019

    • Author(s)
      Horikoshi Naoki、Kujirai Tomoya、Sato Koichi、Kimura Hiroshi、Kurumizaka Hitoshi
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 515 Issue: 4 Pages: 719-724

    • DOI

      10.1016/j.bbrc.2019.06.012

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA damage detection in nucleosomes involves DNA register shifting2019

    • Author(s)
      Matsumoto Syota、Cavadini Simone、Bunker Richard D.、Grand Ralph S.、Potenza Alessandro、Rabl Julius、Yamamoto Junpei、Schenk Andreas D.、Schubeler Dirk、Iwai Shigenori、Sugasawa Kaoru、Kurumizaka Hitoshi、Thoma Nicolas H.
    • Journal Title

      Nature

      Volume: 571 Issue: 7763 Pages: 79-84

    • DOI

      10.1038/s41586-019-1259-3

    • NAID

      120006634977

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural and biochemical analyses of the nuclear pore complex component ELYS identify residues responsible for nucleosome binding2019

    • Author(s)
      Kobayashi Wataru、Takizawa Yoshimasa、Aihara Maya、Negishi Lumi、Ishii Hajime、Kurumizaka Hitoshi
    • Journal Title

      Communications Biology

      Volume: 2 Issue: 1 Pages: 163-163

    • DOI

      10.1038/s42003-019-0385-7

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical characterization of the placeholder nucleosome for DNA hypomethylation maintenance2019

    • Author(s)
      Hirano Rina、Kujirai Tomoya、Negishi Lumi、Kurumizaka Hitoshi
    • Journal Title

      Biochemistry and Biophysics Reports

      Volume: 18 Pages: 100634-100634

    • DOI

      10.1016/j.bbrep.2019.100634

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Free energy profile for unwrapping outer superhelical turn of CENP-A nucleosome2019

    • Author(s)
      Kono Hidetoshi、Sakuraba Shun、Ishida Hisashi
    • Journal Title

      Biophysics and Physicobiology

      Volume: 16 Issue: 0 Pages: 337-343

    • DOI

      10.2142/biophysico.16.0_337

    • NAID

      130007752747

    • ISSN
      2189-4779
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Balance between DNA‐binding affinity and specificity enables selective recognition of longer target sequences in vivo2019

    • Author(s)
      Sunami Tomoko、Kono Hidetoshi
    • Journal Title

      Protein Science

      Volume: 28 Issue: 9 Pages: 1630-1639

    • DOI

      10.1002/pro.3677

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation2019

    • Author(s)
      Klein BJ, Jang SM, Lachance C, Mi W, Lyu J, Sakuraba S, Krajewski K, Wang WW, Sidoli S, Liu J, Zhang Y, Wang X, Warfield BM, Kueh AJ, Voss AK, Thomas T, Garcia BA, Liu WR, Strahl BD, Kono H, Li W, Shi X, Cote J, Kutateladze TG.
    • Journal Title

      Nature Communications

      Volume: 10 Issue: 1 Pages: 12551-12555

    • DOI

      10.1038/s41467-019-12551-5

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Newly developed Laboratory-based Size exclusion chromatography Small-angle x-ray scattering System (La-SSS)2019

    • Author(s)
      R. Inoue, T. Nakagawa, K. Morishima, N. Sato, A. Okuda, R. Urade, R. Yogo, S. Yanaka, M. Yagi-Utsumi, K. Kato, K. Omoto, K. Ito, M. Sugiyama
    • Journal Title

      Scientific Reports

      Volume: 9 Issue: 1 Pages: 1-12

    • DOI

      10.1038/s41598-019-48911-w

    • NAID

      120006799252

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural transition of the nucleosome during chromatin remodeling and transcription2019

    • Author(s)
      Kobayashi Wataru、Kurumizaka Hitoshi
    • Journal Title

      Current Opinion in Structural Biology

      Volume: 59 Pages: 107-114

    • DOI

      10.1016/j.sbi.2019.07.011

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism.2019

    • Author(s)
      Arimura Y, Tachiwana H, Takagi H, Hori T, Kimura H, Fukagawa T, Kurumizaka H
    • Journal Title

      Nature Commun.

      Volume: 10 Issue: 1 Pages: 576-576

    • DOI

      10.1038/s41467-019-08314-x

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Structural insight into nucleosome transcription by RNA polymerase II with elongation factors2019

    • Author(s)
      Ehara Haruhiko、Kujirai Tomoya、Fujino Yuka、Shirouzu Mikako、Kurumizaka Hitoshi、Sekine Shun-ichi
    • Journal Title

      Science

      Volume: 363 Issue: 6428 Pages: 744-747

    • DOI

      10.1126/science.aav8912

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome2018

    • Author(s)
      Arimura Yasuhiro、Ikura Masae、Fujita Risa、Noda Mamiko、Kobayashi Wataru、Horikoshi Naoki、Sun Jiying、Shi Lin、Kusakabe Masayuki、Harata Masahiko、Ohkawa Yasuyuki、Tashiro Satoshi、Kimura Hiroshi、Ikura Tsuyoshi、Kurumizaka Hitoshi
    • Journal Title

      Nucleic Acids Research

      Volume: - Pages: 10007-10018

    • DOI

      10.1093/nar/gky661

    • NAID

      120006545208

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structural basis of the nucleosome transition during RNA polymerase II passage2018

    • Author(s)
      Kujirai Tomoya、Ehara Haruhiko、Fujino Yuka、Shirouzu Mikako、Sekine Shun-ichi、Kurumizaka Hitoshi
    • Journal Title

      Science

      Volume: 362 Issue: 6414 Pages: 595-598

    • DOI

      10.1126/science.aau9904

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Investigating the Influence of Arginine Dimethylation on Nucleosome Dynamics Using All-Atom Simulations and Kinetic Analysis2018

    • Author(s)
      Li Zhenhai、Kono Hidetoshi
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 122 Issue: 42 Pages: 9625-9634

    • DOI

      10.1021/acs.jpcb.8b05067

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A chromatin integration labelling method enables epigenomic profiling with lower input2018

    • Author(s)
      Harada Akihito、Maehara Kazumitsu、Handa Tetsuya、Arimura Yasuhiro、Nogami Jumpei、Hayashi-Takanaka Yoko、Shirahige Katsuhiko、Kurumizaka Hitoshi、Kimura Hiroshi、Ohkawa Yasuyuki
    • Journal Title

      Nature Cell Biology

      Volume: 21 Issue: 2 Pages: 287-296

    • DOI

      10.1038/s41556-018-0248-3

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystallographic analysis of the overlapping dinucleosome as a novel chromatin unit2018

    • Author(s)
      Nishimura Masahiro、Nozawa Kayo、Kurumizaka Hitoshi
    • Journal Title

      Biophysics and Physicobiology

      Volume: 15 Issue: 0 Pages: 251-254

    • DOI

      10.2142/biophysico.15.0_251

    • NAID

      130007535611

    • ISSN
      2189-4779
    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 蛋白質の階層構造ダイナミクスの解明2023

    • Author(s)
      中川洋、井上倫太郎、小田隆、矢木-内海真穂、斎尾智英、苙口友隆、長田裕也、杉山正明、佐藤衛、川北至信、岩瀬裕希、富永大輝、高田慎一
    • Organizer
      2022年度量子ビームサイエンスフェスタ
    • Related Report
      2022 Annual Research Report
  • [Presentation] BL02による希薄タンパク質溶液のデータ収集最適化2023

    • Author(s)
      富永大輝, 中川洋, 佐原雅恵, 小田隆, 井上倫太郎, 杉山正明
    • Organizer
      2022年度量子ビームサイエンスフェスタ
    • Related Report
      2022 Annual Research Report
  • [Presentation] X線小角散乱と全原子分子動力学シミュレーションによるα-glucosidaseの溶液構造研究2023

    • Author(s)
      會澤直樹、清水将裕、横田幸紀、守島健、柚木康弘、奥田綾、佐藤信浩、井上倫太郎、大田ゆかり、裏出令子、杉山正明
    • Organizer
      2022年度量子ビームサイエンスフェスタ
    • Related Report
      2022 Annual Research Report
  • [Presentation] The effect of Mg2+ ions on nucleosomal array under external force2023

    • Author(s)
      Amarjeet Kumar、Tomoko Sunami、Shoko Sato、Hitoshi Kurumizaka、Hidetoshi Kono
    • Organizer
      The 67th Biophysical Society Annual Meeting
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] クライオ電子顕微鏡によるクロマチン構造解析2022

    • Author(s)
      胡桃坂 仁志
    • Organizer
      日本顕微鏡学会 第78回学術講演会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Structural dynamics of the nucleosome during transcription elongation2022

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      The 2022 (6th) Telluride Workshop on Chromatin Structure and Dynamics
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Impact of torque and TF-binding on nucleosome investigated by molecular dynamics simulation and SAXS2022

    • Author(s)
      Kono Hidetoshi
    • Organizer
      The 2022 (6th) Telluride Workshop on Chromatin Structure and Dynamics
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural insights into chromatin dynamics during gene expression2022

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      Cold Spring Harbor Laboratory "Epigenetics & Chromatin" Meeting
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 遺伝子転写におけるクロマチン構造ダイナミクス2022

    • Author(s)
      胡桃坂 仁志
    • Organizer
      2022年度国立遺伝学研究所クロマチン研究会 令和4年度遺伝研研究会 (クロマチン・細胞核構造の動的変換とゲノム機能制御)
    • Related Report
      2022 Annual Research Report
  • [Presentation] ジヌクレオソームを用いたヘテロクロマチン基盤構造のクライオ電子顕微鏡解析2022

    • Author(s)
      何承翰、鯨井智也、滝沢由政、胡桃坂仁志
    • Organizer
      新学術領域・学術変革A合同「若手の会 2022」
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヒストンバリアントによるクロマチン転写の制御機構2022

    • Author(s)
      赤津綜隆、鯨井智也、滝沢由政、平野里奈、江原晴彦、関根俊一、胡桃坂仁志
    • Organizer
      新学術領域・学術変革A合同「若手の会 2022」
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヌクレオソームにおけるヒストンN末端テールの機能2022

    • Author(s)
      大石匠美、畠澤卓、鯨井智也、林剛介、江原晴彦、関根俊一、滝沢由政、胡桃坂仁志
    • Organizer
      新学術領域・学術変革A合同「若手の会 2022」
    • Related Report
      2022 Annual Research Report
  • [Presentation] エピジェネティックな遺伝子制御のクロマチン構造基盤2022

    • Author(s)
      胡桃坂 仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 病原性寄生虫Giardia lambliaのクロマチン基盤構造2022

    • Author(s)
      佐藤 祥子、滝沢 由政、Dacher Mariko、田中大貴、立和名博昭、飯倉ゆかり、鯨井智也、Ho Cheng-Han、安達成彦、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] リンカーヒストンH1を含むヘテロクロマチン基盤構造のクライオ電顕解析2022

    • Author(s)
      何承翰、鯨井智也、滝沢由政、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 転写におけるクロマチン構造の維持機構2022

    • Author(s)
      赤津綜隆、江原晴彦、鯨井智也、藤田理紗、滝沢由政、関根俊一、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] メタノール資化酵母 K. pastorisヌクレオソームにおける転写解析およびcryo-EM構造解析2022

    • Author(s)
      福島友太郎、畠澤卓、平井誠也、鯨井智也、江原晴彦、関根俊一、滝沢由政、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヒストンアセチル化酵素p300によるヌクレオソーム結合の構造基盤2022

    • Author(s)
      畠澤卓、Liu Jiuyang、滝沢由政、Zandian Mohamad、根岸瑠美、Kutateladze Tatiana G.、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヒストンN末端テールがヌクレオソームの機能に与える影響2022

    • Author(s)
      大石匠美、畠澤卓、鯨井智也、江原晴彦、関根俊一、滝沢由政、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 核内タンパク質による高次クロマチン形成機構の構造生物学的解析2022

    • Author(s)
      堀越直樹、三宅諒祐、曽川千鶴、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] クライオ電子顕微鏡による色素性乾皮症E群タンパク質DDB2の紫外線損傷認識機構の解明2022

    • Author(s)
      松本翔太、滝沢由政、小笠原光雄、橘春奈、山元淳平、岩井成憲、菅澤薫、胡桃坂仁志
    • Organizer
      第95回日本生化学会大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 転写におけるクロマチン構造とダイナミクス2022

    • Author(s)
      胡桃坂 仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヒストンH3バリアントを標的とした細胞核抽出クロマチンの構造解析2022

    • Author(s)
      塩井琢郎、畠澤卓、大川恭行、滝沢由政、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] クライオ電子顕微鏡解析から明らかになった新しいサブヌクレオソーム・H3-H4オクタソームの構造機能解析2022

    • Author(s)
      野澤佳世、滝沢由政、七種和美、明石知子、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] H3-H4オクタソーム上で起こる転写機構の解析2022

    • Author(s)
      大井茉祐子、野澤佳世、西村正宏、滝沢由政、鯨井智也、江原晴彦、関根俊一、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] piRNA因子Rhinoとヌクレオソームの複合体構造解析2022

    • Author(s)
      大畑健汰、大角健、滝沢由政、塩見美喜子、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ピキア酵母ヌクレオソームの立体構造および転写解析2022

    • Author(s)
      福島友太郎、畠澤卓、平井誠也、鯨井智也、江原晴彦、滝沢由政、関根俊一、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヒストンH3バリアントH3.8を含むヌクレオソームの性状解析2022

    • Author(s)
      平井誠也、鯨井智也、大川恭行、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 転写共役修復におけるRNAポリメラーゼII-ヌクレオソーム複合体の構造ダイナミクス2022

    • Author(s)
      大角健、鯨井智也、滝沢由政、江原晴彦、関根俊一、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] クロマチン結合因子DEKの構造とクロマチン制御機構2022

    • Author(s)
      鯨井智也、越後谷健太、岸雄介、滝沢由政、佐伯麻衣、増本博司、木村宏、後藤由季子、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 細胞核内より抽出したクロマチンユニットのクライオ電顕構造解析2022

    • Author(s)
      滝沢由政、畠澤卓、胡桃坂仁志
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] NSD2酵素のメチル基付加機構と翻訳後修飾のヌクレオソームに与える影響2022

    • Author(s)
      河野秀俊、Kumar Amarjeet、佐藤光、仙石徹
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] ヌクレオソームDNAのほどけやすさに見られる非対称性2022

    • Author(s)
      角南智子、石田恒、河野秀俊
    • Organizer
      第45回日本分子生物学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 転写におけるヌクレオソーム構造のダイナミクス2022

    • Author(s)
      鯨井智也、江原晴彦、白水美香子、関根俊一、胡桃坂仁志
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] クロマトソーム上での転写伸長機構に関する解析2022

    • Author(s)
      平野里奈、江原晴彦、鯨井智也、関根俊一、胡桃坂仁志
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 転写因子p53によるヌクレオソーム中のDNA配列認識機構の構造的研究2022

    • Author(s)
      西村正宏
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] NSD2によるヌクレオソーム上H3 Lys36メチル化の構造基盤2022

    • Author(s)
      仙石徹、佐藤光、クマールアマラジート、濱田恵輔、河野秀俊、緒方一博
    • Organizer
      第15回日本エピジェネティクス研究会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] クライオ電子顕微鏡によるヒトヌクレオソームの高分解能構造解析2022

    • Author(s)
      滝沢由政、佐藤祥子、何承翰、ダネフラドスティン、胡桃坂 仁志
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 新しいクロマチン基盤構造 H3-H4 オクタソームのクライオ電子顕微鏡解析2022

    • Author(s)
      野澤佳世、滝沢由政、七種和美、明石知子、胡桃坂仁志
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 小角散乱及び中性子準弾性散乱によるHef-IDRの構造・ダイナミクス解析2022

    • Author(s)
      井上 倫太郎、小田隆、中川洋、富永大輝、川北至信、佐藤衛、杉山 正明
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] X線小角散乱プロファイルと粗視化分子動力学計算に基づく4ドメインタンパク質ER-60の構造研究2022

    • Author(s)
      清水将裕、奥田綾、守島健、柚木康弘、井上倫太郎、佐藤信浩、裏出令子、杉山正明
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 小角散乱と超遠心分析を組み合わせた多分散溶液中の蛋白質構造解析法の開発2022

    • Author(s)
      守島健、奥田綾、佐藤信浩、井上倫太郎、清水将裕、柚木康弘、裏出令子、杉山正明
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 生物物理と計算科学の統合手法による時計タンパク質KaiABC複合体全長の溶液構造の解明2022

    • Author(s)
      柚木康弘、松本淳、守島健、マーテル アン、ポーカー リオネル、佐藤信浩、與語理那、富永大輝、井上倫太郎、矢木真穂、奥田綾、清水将裕、裏出令子、寺内一姫、河野秀俊、矢木宏和、加藤晃一、杉山正明
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] X線小角散乱法による酸化的フォールディング酵素ER-60の溶液構造解析2022

    • Author(s)
      奥田綾、清水将裕、守島健、井上倫太郎、佐藤信浩、柚木康弘、裏出令子、杉山正明
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヌクレオソームとその関連タンパク質との相互作用2022

    • Author(s)
      河野秀俊
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] ヌクレオソームDNAの配列依存的アンラッピングのFRET解析2022

    • Author(s)
      角南智子、河野秀俊
    • Organizer
      第22回日本蛋白質科学会年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] JRR3で最先端の生体高分子の中性子溶液散乱を!2022

    • Author(s)
      杉山正明
    • Organizer
      日本中性子科学会第22回年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 好熱性古細菌由来天然変性タンパク質の生理的温度における動的構造とダイナミクス2022

    • Author(s)
      小田隆、井上倫太郎、富永大輝、中川洋、守島健、岩瀬裕希、石野良純、佐藤衛、杉山正明
    • Organizer
      日本中性子科学会第22回年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 超遠心分析と小角散乱の複合手法による時計タンパク質複合体の溶液構造解析2022

    • Author(s)
      守島健、柚木康弘、清水将裕、奥田綾、井上倫太郎、佐藤信浩、矢木宏和、加藤晃一、杉山正明
    • Organizer
      日本中性子科学会第22回年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 逆転コントラスト同調中性子小角散乱解析を目指したER-60の重水素化試料調製2022

    • Author(s)
      奥田綾、井上倫太郎、守島健、柚木康弘、清水将裕、佐藤信浩、裏出令子、杉山正明
    • Organizer
      日本中性子科学会第22回年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 高濃度環境下のα-クリスタリンのサブユニット交換2022

    • Author(s)
      井上倫太郎、守島健、奥田綾、佐藤信浩、 杉山正明
    • Organizer
      日本中性子科学会第22回年会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Future Perspective of Biological Small-Angle Scattering2022

    • Author(s)
      Sugiyama M
    • Organizer
      Neutron Scattering on continuous sources - future developments, US-Japan workshop, Oak Ridge National Laboratory, USA
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] SANS for soft matter2022

    • Author(s)
      Inoue R, Sugiyama M
    • Organizer
      Neutron Scattering on continuous sources - future developments, US-Japan workshop, Oak Ridge National Laboratory, USA
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Integrated Method with Analytical Ultracentrifugation and Small-Angle Scattering (AUC-SAS) for the Structural Analysis of a Biomacromolecule in a Polydisperse Solution2022

    • Author(s)
      Morishima K, Okuda A, Sato N, Shimizu M, Yunoki Y, Inoue R, Urade R, Sugiyama M
    • Organizer
      XVIII International Small-Angle Scattering Conference (SAS2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Solution Structure Analysis of the Multi-domain Protein, ER-60 by Small Angle Scattering2022

    • Author(s)
      Okuda A, Shimizu M, Morishima K, Inoue R, Sato N, Yunoki Y, Urade R, Sugiyama M
    • Organizer
      XVIII International Small-Angle Scattering Conference (SAS2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Domain Conformation of Multi-domain Protein ER-60 Studied with Hybrid Approach of Coarse-grained Simulations and Small-angle X-ray Scattering2022

    • Author(s)
      Shimizu M, Okuda A, Morishima K, Sato N, Inoue R, Yunoki Y, Urade R, Sugiyama M
    • Organizer
      XVIII International Small-Angle Scattering Conference (SAS2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Dynamics and Structure of Intrinsically Disordered Region of Hef as Studied by Solution Scattering2022

    • Author(s)
      Inoue R, Oda T, Nakagwa H, Tominaga T, Kawakita Y, Sato M, Sugiyama M
    • Organizer
      XVIII International Small-Angle Scattering Conference (SAS2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 新しいクロマチン基盤ユニットであるH3-H4オクタソームのクライオ電子顕微鏡解析2022

    • Author(s)
      野澤佳世、滝沢由政、七種和美、明石知子、胡桃坂仁志
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Internal Dynamics of Intrinsically Disordered Protein as Studied by Neutron Scattering2022

    • Author(s)
      井上倫太郎、小田隆、中川洋、富永大輝、川北至信、佐藤衛、杉山正明
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 多分散溶液中の生体高分子の構造解析のための超遠心分析と小角散乱による統合アプローチ2022

    • Author(s)
      守島健、井上倫太郎、奥田綾、佐藤信浩、清水将裕、柚木康弘、裏出令子、杉山正明
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Kai 時計システムにおける分子の統合運動2022

    • Author(s)
      杉山正明、守島健、柚木康弘、井上倫太郎、佐藤信浩、矢木宏和、加藤晃一
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ヌクレオソームからH2A-H2B2量体が脱離する際の自由エネルギー局面解析2022

    • Author(s)
      Ishida H, Kono H.
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Study on photoactivated enzyme OaPAC by QM/MM molecular simulation2022

    • Author(s)
      Taguchi M, Sakuraba S, Wai S. Chan, Kono H.
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Building a Coarse-grained Model of Chromatin2022

    • Author(s)
      Justin Chan, Hidetoshi Kono
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] FRET study of the sequence dependence of nucleosomal DNA unwrapping2022

    • Author(s)
      Sunami T, Kono H.
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Benchmark of force fields to characterize the short intrinsically disordered region of FUS-LC domain2022

    • Author(s)
      Maud Chan-Yao-Chong, Justin Chan, Hidetoshi Kono
    • Organizer
      第60回日本生物物理学会年会
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Molecular insight into photoactivation mechanism of BLUF protein by QM/MM free energy simulation2022

    • Author(s)
      Taguchi M, Sakuraba S, Wai S. Chan, Kono H.
    • Organizer
      The 5th International Forum on Quantum Metrology and Sensing
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 転写伸長におけるヌクレオソームの崩壊と再構築機構の構造生物学的解析2022

    • Author(s)
      鯨井智也、江原晴彦、白水美香子、関根俊一、胡桃坂仁志
    • Organizer
      第40回染色体ワークショップ・第21回核ダイナミクス研究会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヌクレオソームにおけるヒストンN末端テールによる転写制御2022

    • Author(s)
      大石匠美、畠澤卓、赤津綜隆、鯨井智也、林剛介、江原晴彦、関根俊一、滝沢由政、胡桃坂仁志
    • Organizer
      第40回染色体ワークショップ・第21回核ダイナミクス研究会
    • Related Report
      2022 Annual Research Report
  • [Presentation] ヌクレオソームからのH2A-H2B脱離における重要なアミノ酸残基の特定2022

    • Author(s)
      石田恒、河野秀俊
    • Organizer
      第40回染色体ワークショップ・第21回核ダイナミクス研究会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Benchmark of force fields to characterize the intrinsically disordered region of FUS-LC domain2022

    • Author(s)
      Chan-Yao-Chong Maud, Chan S. Wai, Kono H.
    • Organizer
      量子生命科学会 第4回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Building a Coarse-grained Model of Chromatin: Nucleosome-Nucleosome Interaction Patterns2022

    • Author(s)
      Chan S. Wai, Kono H.
    • Organizer
      量子生命科学会 第4回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 転写開始点のヌクレオソームDNAアンラッピングのFRET解析2022

    • Author(s)
      角南智子、河野秀俊
    • Organizer
      量子生命科学会 第4回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 全原子分子動力学シミュレーションを用いた、ヒストンH2A-H2B のヌクレオソームからの脱離メカニズム解析2022

    • Author(s)
      石田恒、河野秀俊
    • Organizer
      量子生命科学会 第4回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] QM/MM 分子シミュレーションによ る光活性化酵素 PAC の機能解析2022

    • Author(s)
      田口真彦、櫻庭俊、ソオンチワ、河野秀俊
    • Organizer
      量子生命科学会 第4回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] 核内DNA収納体の構造形成崩壊の自由エネルギー地形解析2022

    • Author(s)
      石田恒
    • Organizer
      第9回「富岳」を中核とするHPCIシステム利用研究課題
    • Related Report
      2022 Annual Research Report
  • [Presentation] 溶液散乱と計算手法の統合解析によるシアノバクテリアの時計タンパク質KaiABC複合体の全体構造の解明2022

    • Author(s)
      柚木康弘、松本淳、守島健、Martel A、Porcar L、佐藤信浩、與語 理那、富永大輝、井上倫太郎、矢木真穂、et al.
    • Organizer
      第29回日本時間生物学会学術大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Structure and dynamics of nucleosomes, the fundamental structural unit of chromatin2022

    • Author(s)
      Hidetoshi Kono、Jinzen Ikebe、Hisashi Ishida、Shun Sakuraba
    • Organizer
      Joint Meeting of the 20th KIAS Conference on Protein Structure and Function and The 7th Korean-Polish Conference on "Protein Folding: Theoretical and Experimental Approaches"
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural insights into the dynamics of the chromatin architecture2022

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      The 30th Hot Spring Harbor International Symposium
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] クロマチン構造生物学の現状と将来2022

    • Author(s)
      胡桃坂 仁志
    • Organizer
      2021年度中性子構造生物学研究会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] リプログラミング因子によるクロマチン結合と構造変換2022

    • Author(s)
      胡桃坂 仁志
    • Organizer
      第21回日本再生医療学会総会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] ヌクレオソームDNA解離の配列依存性2021

    • Author(s)
      角南智子、ルオディ、河野秀俊
    • Organizer
      第21回日本蛋白質科学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Integrative approach to structure of huge protein complex in Kai-clock protein system2021

    • Author(s)
      Sugiyama M.
    • Organizer
      MLZ symposium
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 転写開始点に特徴的な塩基配列を有するヌクレオソームのFRET解析2021

    • Author(s)
      角南智子、河野秀俊
    • Organizer
      量子生命科学会第3回大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Molecular dynamics simulation of displacement of H2A-H2B from nucleosome2021

    • Author(s)
      石田恒、河野秀俊
    • Organizer
      量子生命科学会第3回大会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 計算と実験の協奏による生体高分子の作る溶液中での高次構造とそのダイナミクス解析の挑戦2021

    • Author(s)
      杉山正明
    • Organizer
      第7回大型実験施設とスーパーコンピュータとの連携利用シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 散乱法を主とした統合的な手法による溶液中の生体高分子の構造解析2021

    • Author(s)
      杉山正明
    • Organizer
      関東高分子若手会・ミニシンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Disentangling the Effects of Histone Post-Translational Modifications on Nucleosome Packing and Chromatin Structure2021

    • Author(s)
      Chan J., Kono H.
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Free energy profile of H2A-H2B dimer displacement from nucleosome2021

    • Author(s)
      Ishida Hisashi, Kono Hidetoshi
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Catalytic enhancement of NSD2 following oncogenic mutations E1099K and T1150A is caused by increase in the auto-inhibitory loop dynamics2021

    • Author(s)
      Kumar A., Sato K., Sakuraba S., Ogata K., Sengoku T., Kono H.
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Sequence dependence of nucleosomal DNA unwrapping2021

    • Author(s)
      Sunami Tomoko, Kono Hidetoshi
    • Organizer
      第59回日本生物物理学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 三位一体(試料・測定・解析)の中性子溶液散乱で迫る生体高分子の溶液構造2021

    • Author(s)
      杉山正明
    • Organizer
      CBI学会2021大会シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 第21回日本中性子科学会年会2021

    • Author(s)
      Kono Hidetoshi
    • Organizer
      Modeling Protein Complexes by Integrated Approach
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] NSD2によるヌクレオソーム上H3 Lys36メチル化の構造基盤2021

    • Author(s)
      仙石徹、佐藤光、クマールアマラジート、濱田恵輔、岡田千佳子、小國麻子、町山歩、櫻庭俊、西澤知宏、濡木理、河野秀俊、緒方一博
    • Organizer
      第44回 日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] NSD2 によるヌクレオソーム上H3K36メチル化の構造基盤2021

    • Author(s)
      仙石徹、佐藤光、クマールアマラジート、濱田恵輔、岡田千佳子、小國麻子、町山歩、櫻庭俊、西澤知宏、濡木理、河野秀俊、緒方一博
    • Organizer
      第39回染色体ワークショップ・第20回核ダイナミクス研究会
    • Related Report
      2021 Annual Research Report
  • [Presentation] ヌクレオソーム中のH2A-H2BテイルとDNAの動的相互作用2021

    • Author(s)
      大友秀明、栗田順一、櫻庭俊、Zhenhai L.、有村泰宏、若森昌聡、津中康央、梅原崇史、胡桃坂仁志、河野秀俊、西村善文
    • Organizer
      第39回染色体ワークショップ・第20回核ダイナミクス研究会
    • Related Report
      2021 Annual Research Report
  • [Presentation] ヌクレオソームにおけるヒストンH2A-H2Bテイルの動的構造2021

    • Author(s)
      大友秀明、栗田順一、櫻庭俊、Zhenhai, L.、有村泰宏、若森昌聡、津中康央、梅原崇史、胡桃坂仁志、河野秀俊、西村善文
    • Organizer
      第44回 日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 小角散乱による溶液生体高分子構造解析への新たなる挑戦2021

    • Author(s)
      杉山正明
    • Organizer
      小角散乱とナノ粒子製剤のCMC
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] クロマチン構造における RNA ポリメラーゼ II による転写伸長機構2021

    • Author(s)
      胡桃坂 仁志
    • Organizer
      日本生化学会関東支部例会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Structural studies for chromatin as a regulator of the genome function2021

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      Vienna Biocenter general seminar series
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] クロマチン構造による遺伝子発現制御機構2021

    • Author(s)
      胡桃坂 仁志
    • Organizer
      日本生化学会 第94回日本生化学会大会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Structural Studies of DNA Function in Nucleosomes2021

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      The 48th International Symposium on Nucleic Acids Chemistry
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 核内因子によるクロマチン転写制御機構の解析2021

    • Author(s)
      胡桃坂 仁志
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] Structural basis for genome regulation by chromatin2021

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      Pacifichem 2021
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nucleosome contribution to epigenetic genome regulation2021

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      Biophysical Society 65th Annual Meeting
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ヌクレオソームポテンシャルからクロマチンポテンシャル2021

    • Author(s)
      河野秀俊
    • Organizer
      金沢大学異分野融合セミナー
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Structural Studies for Nucleosome Core Particle Complexed with Its Binding Factors2021

    • Author(s)
      Kurumizaka Hitoshi
    • Organizer
      RIKEN BDR Symposium
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ヌクレオソームによる自然免疫DNAセンサーcGASの不活性化機構2021

    • Author(s)
      鯨井智也、Christian Zierhut、滝沢由政、Ryan Kim、根岸瑠美、粉間信樹、平井誠也、船引宏則、胡桃坂仁志
    • Organizer
      第38回染色体ワークショップ
    • Related Report
      2020 Annual Research Report
  • [Presentation] モノメチル化酵素SET8とヌクレオソーム複合体の構造解析2021

    • Author(s)
      何承翰、滝沢由政、小林航、有村泰宏、木村宏、胡桃坂仁志
    • Organizer
      第38回染色体ワークショップ
    • Related Report
      2020 Annual Research Report
  • [Presentation] ヒストンバリアントH2A.Bを含むヌクレオソームの 新規動態の解析2021

    • Author(s)
      平野里奈、有村泰宏、鯨井智也、柴田幹大、奥田綾、守島健、井上倫太郎、杉山正明、胡桃坂仁志
    • Organizer
      第38回染色体ワークショップ
    • Related Report
      2020 Annual Research Report
  • [Presentation] マウスのヒストンH3バリアントH3mm18を含むヌクレオソームの生化学的解析2021

    • Author(s)
      平井誠也、小山昌子、武田泰子、小松哲郎、大川恭行、胡桃坂仁志
    • Organizer
      第14回エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] パイオニア転写因子OCT4のヌクレオソームへの結合メカニズムの解明2021

    • Author(s)
      越後谷健太、小山昌子、根岸瑠美、滝沢由政、水上優夏、島林秀伎、黒田明里、胡桃坂仁志
    • Organizer
      第14回エピジェネティクス研究会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] エピジェネティクスの根幹を担うクロマチン機能構造の可視化2020

    • Author(s)
      胡桃坂 仁志
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 中性子散乱データを活用した超分子のモデリング2020

    • Author(s)
      河野秀俊
    • Organizer
      CBI学会2020大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Observation of protein dynamics with solution scattering2020

    • Author(s)
      Masaaki Sugiyama
    • Organizer
      第58回日本生物物理学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] システム内の分子動態を溶液散乱で探る ~DA-SANS からBC-SANS を目指して~2020

    • Author(s)
      杉山正明
    • Organizer
      令和2年度BINS公開シンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] クライオEM 単粒子解析によるクロマチンダイナミクスの理解2020

    • Author(s)
      胡桃坂 仁志
    • Organizer
      日本中性子科学会2020年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 相分離への計算科学的アプローチ2020

    • Author(s)
      河野秀俊
    • Organizer
      第6回蛋白質工学研究会ワークショップ
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] クロマチン構造による遺伝子発現のエピジェネティック制御2020

    • Author(s)
      胡桃坂 仁志
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] クロマチンダイナミクスの構造生物学的研究2020

    • Author(s)
      胡桃坂 仁志
    • Organizer
      第16回日本臨床プロテオゲノミクス研究会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] Structural basis for an array of engrailed homeodomains toward the development of genome-editing enzymes2020

    • Author(s)
      Sunami T, Hirano Y, Tamada T, Kono H,.
    • Organizer
      The 58th Annual Meeting of the Biophysics Society of Japan
    • Related Report
      2020 Annual Research Report
  • [Presentation] 光活性化アデニル酸シクラーゼの量子/古典ハイブリッド分子シミュレーション2020

    • Author(s)
      田口真彦、櫻庭俊、チャンワイソオン、河野秀俊
    • Organizer
      量子生命科学会 第2回大会
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 全原子分子動力学シミュレーションを用いた、ヌクレオソーム安定性に対するねじれストレス影響の解析2020

    • Author(s)
      石田恒、河野秀俊
    • Organizer
      量子生命科学会 第2回大会
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Understanding the Dinucleosome Structural Dynamics at All Atom Resolution2020

    • Author(s)
      Kumar A, Matsumoto A, Kono H,
    • Organizer
      量子生命科学会 第2回大会
    • Related Report
      2020 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 核内因子ネットワークによる遺伝子制御機構2020

    • Author(s)
      藤田理紗、山本達郎、江原晴彦、有村泰宏、鯨井智也、関根俊一、斉藤典子、胡桃坂仁志
    • Organizer
      第93回日本生化学会大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Structural analysis of highter-order chromatin containing CENP-A nucleosome2020

    • Author(s)
      滝沢由政、何承翰、立和名博昭、ウォルフ マティアス、胡桃坂仁志
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] パイオニア転写因子GATA3による標的ヌクレオソームへの結合メカニズム2020

    • Author(s)
      田中大貴、滝沢由政、高久誉大、熊川雄祐、WADE Paul A、胡桃坂仁志
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] パイオニア転写因子OCT4によるヌクレオソーム結合の生化学的解析2020

    • Author(s)
      越後谷健太、小山昌子、根岸瑠美、滝沢由政、水上優夏、島林秀伎、黒田明里、胡桃坂仁志
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 転写因子p53はリンカーDNAとヒストンH3-H4を介してヌクレオソームと結合する2020

    • Author(s)
      西村正宏、有村泰宏、野澤佳世、胡桃坂仁志
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] DNA損傷認識タンパク質DDB2による新たなクロマチン動態制御機構の解明2020

    • Author(s)
      松本翔太、CAVADINI Simone、BUNKER Richard D.、GRAND Rslph S.、山本淳平、SCHUEBELER Dirk、岩井成憲、菅澤薫、胡桃坂仁志、THOMAE Nicolas H.
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] cGAS-ヌクレオソーム複合体構造から明らかになったヌクレオソームによるcGAS不活性化のメカニズム2020

    • Author(s)
      鯨井智也、ZIERHUT Christian、滝沢由政、KIM RYAN、根岸瑠美、粉間信樹、平井誠也、船引宏則、胡桃坂仁志
    • Organizer
      第43回日本分子生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] Challenges for the chromatin structure determination by cryo-EM.2020

    • Author(s)
      Takizawa Y.
    • Organizer
      Cryo-Electron Microscopy Course at OIST
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Chromatin structure and dynamics as the platform for DNA repair.2020

    • Author(s)
      Takizawa Y, Ho C-H, Kobayashi W, Ishii H, Arimura Y, Kurumizaka H
    • Organizer
      4th DNA Repair/Replication Structures and Cancer Conference
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural studies of chromatin: Toward understanding the regulation of genomic DNA.2019

    • Author(s)
      Kurumizaka H.
    • Organizer
      Multiscale Modeling of Chromatin: Bridging Experiment with Theory.
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural studies of the chromatin: Towards the understanding of epigenetics2019

    • Author(s)
      胡桃坂仁志
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 創薬の基盤となるエピジェネティクスの構造生物学2019

    • Author(s)
      胡桃坂仁志
    • Organizer
      第56回薬剤学懇談会研究討論会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Cryo-EM imaging of the chromatin architecture2019

    • Author(s)
      胡桃坂仁志
    • Organizer
      第19回日本蛋白質科学会年会・第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] ヌクレオソームの崩壊と転写2019

    • Author(s)
      河野秀俊、Luo D、石田恒
    • Organizer
      第19回日本蛋白質科学会年会・第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Structural studies of chromatin towards the understanding of epigenetics mechanisms.2019

    • Author(s)
      Kurumizaka H.
    • Organizer
      Telluride workshop
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Cryo-EM studies for nucleosome and chromatin2019

    • Author(s)
      胡桃坂仁志
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Integrated approach of experimental data and computer modeling and simulation for understanding chromatin structure and dynamics.2019

    • Author(s)
      Kono H, Matsumoto A, Sakuraba S, Ishida H.
    • Organizer
      第57回日本生物物理学会年会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] モデリングとシミュレーションによる生体高分子の構造機能解析2019

    • Author(s)
      河野秀俊
    • Organizer
      CBI学会2019年大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] クライオ電子顕微鏡によるクロマチン構造基盤の解析2019

    • Author(s)
      滝沢由政
    • Organizer
      CBI 学会 2019 年大会(Thermo Fisher スポンサーセッション)
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] Integrative approach to complex structure and system.2019

    • Author(s)
      Sugiyama M.
    • Organizer
      3rd Asia-Oceania Conference on Neutron Scattering
    • Related Report
      2019 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structural study of transcription on chromatin2019

    • Author(s)
      鯨井智也、江原晴彦、藤野優佳、白水美香子、関根俊一、胡桃坂仁志
    • Organizer
      第13回日本エピジェネティクス研究会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] クロマチンによる転写制御の構造生物学的解析2019

    • Author(s)
      鯨井智也、江原晴彦、藤野優佳、白水美香子、関根俊一、胡桃坂仁志
    • Organizer
      第19回日本蛋白質科学会年会・第71回日本細胞生物学会大会 合同年次大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] クロマチン構造における転写反応の構造基盤の解明2019

    • Author(s)
      鯨井智也
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Biochemical and structural analyses of histone methyltransferase PR-Set72019

    • Author(s)
      何承翰、滝沢由政、小林航、石井初芽、平野里奈、有村泰宏、胡桃坂仁志
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] パイオニア転写因子による標的ヌクレオソームの認識と作用2019

    • Author(s)
      小山昌子、島林秀伎、滝沢由政、根岸留美、越後谷健太、水上優夏、黒田明里、胡桃坂仁志
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] クロマチン高次構造によるヒストンの取り込み制御機構2019

    • Author(s)
      立和名博昭、ダッシェ マリコ、前原一満、原田哲仁、大川恭行、木村宏、胡桃坂仁志、斉藤典子
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 転写因子p53によるヌクレオソーム中のDNA認識機構2019

    • Author(s)
      西村正宏、有村泰宏、野澤佳世、滝沢由政、胡桃坂仁志
    • Organizer
      第92回日本生化学会大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural transition of nucleosome during RNA polymerase II transcription revealed by cryo-EM.2019

    • Author(s)
      Kujirai T, Ehara H, Fujino Y, Shirouzu M, Sekine SI, Kurumizaka H.
    • Organizer
      第57回生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] Structural and functional basis of the Mediator complex in the eukaryotic transcriptional system2019

    • Author(s)
      野澤佳世
    • Organizer
      第57回生物物理学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] セントロメア特異的CENP-Aヌクレオソームを含む高次クロマチンのクライオ電子顕微鏡構造解析2019

    • Author(s)
      滝沢由政、何承翰、立和名博昭、Matthias Wolf、胡桃坂仁志
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] クロマチン転写制御において非コードRNAがヌクレオソームに及ぼす影響2019

    • Author(s)
      藤田理紗、山本達郎、江原晴彦、有村泰宏、関根俊一、斉藤典子、胡桃坂仁志
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] クロマチンの構造多様性による遺伝子発現制御2019

    • Author(s)
      胡桃坂仁志 (滝沢代理)
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 中性子散乱で探る溶液中の蛋白質の構造・ダイナミクス -in Cell SANSを目指して-2019

    • Author(s)
      杉山正明
    • Organizer
      第42回日本分子生物学会年会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 溶液散乱法を用いた生体高分子の構造・ダイナミクスの研究2019

    • Author(s)
      杉山正明
    • Organizer
      2018 年度 第2 回水和ナノ構造研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Sequence-Dependent Asymmetric Unwrapping of nucleosomes of yeast2019

    • Author(s)
      Luo, D., Kato, D., Nogami, J., Ohkawa, Y., Kurumizaka, H., and Kono, H.
    • Organizer
      The 63rd Annual Meeting of the Biophysical Society
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] クロマチン機能発現の構造基盤2019

    • Author(s)
      胡桃坂仁志
    • Organizer
      染色体研究の最前線2019
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] スーパーコンピュータで知るタンパク質、DNAの形と動き2019

    • Author(s)
      河野秀俊
    • Organizer
      パコンを知る集い in 岐阜「京」からポスト「京」へ
    • Related Report
      2018 Annual Research Report
  • [Presentation] 新世代中性子構造生物学が目指すサイエンス+現状紹介2019

    • Author(s)
      杉山正明
    • Organizer
      平成30年度構造生物学研究会
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Contribution of CENP-A into centromeric chromatin architecture2018

    • Author(s)
      Kurumizaka H.
    • Organizer
      2018 Centromere Gordon Conference
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] 核酸―タンパク質相互作用制御2018

    • Author(s)
      石田恒; 河野秀俊
    • Organizer
      ポスト「京」重点課題1ワークショップ
    • Related Report
      2018 Annual Research Report
  • [Presentation] エピジェネティック創薬の基盤となるクロマチン構造とダイナミクスに関する研究2018

    • Author(s)
      胡桃坂仁志
    • Organizer
      PPF2018 第16回次世代を担う若手のためのフィジカル・ファーマフォーラム
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] ree energy profiles of the intra- and inter-nucleosomal interactions by all-atom molecular dynamics simulations2018

    • Author(s)
      Ishida, H. and Kono, H.
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Investigating the influence of Argine Dimethylation on Nucleosome Dynamics using All-atom Simulation and Kinetic Analysis2018

    • Author(s)
      Li, Z. and Kono, H.
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Designing an artificial transcription factor with a small molecular weight based on engrailed homeodomain2018

    • Author(s)
      Sunami, T. and Kono, H.
    • Organizer
      第56回日本生物物理学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] クロマチンによる遺伝子発現制御の構造基盤2018

    • Author(s)
      胡桃坂仁志
    • Organizer
      第91回日本生化学会大会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 動的構造生物学によるクロマチン機能解析2018

    • Author(s)
      胡桃坂仁志
    • Organizer
      大阪大学蛋白質研究所セミナー 構造生物学と計算科学の融合による動的構造生物学の新しい展開
    • Related Report
      2018 Annual Research Report
    • Invited
  • [Presentation] Future Perspective of Laboratory-Based SAXS2018

    • Author(s)
      杉山正明
    • Organizer
      XVII International Small Angle Scattering Conference
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ゲノム機能を制御するクロマチンの動的構造変換2018

    • Author(s)
      胡桃坂仁志
    • Organizer
      平成30年度遺伝研研究会「クロマチン・細胞核の動的構造変換とゲノム機能制御」
    • Related Report
      2018 Annual Research Report
  • [Presentation] 再構成によるクロマチン高次構造の可視化2018

    • Author(s)
      胡桃坂仁志
    • Organizer
      第2回 定量生命科学研究所シンポジウム「生命を支える生体超分子の可視化と動態」
    • Related Report
      2018 Annual Research Report
  • [Presentation] Structural studies of genomic DNA regulation by chromatin2018

    • Author(s)
      胡桃坂仁志
    • Organizer
      3R+3C:Replication, Recombination and Repair (3R) with special focus on Chromosome, Chromatin and Cell Cycle (3C)
    • Related Report
      2018 Annual Research Report
    • Int'l Joint Research
  • [Presentation] クロマチンに潜在する遺伝子制御能の構造基盤2018

    • Author(s)
      胡桃坂仁志
    • Organizer
      第41回日本分子生物学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] 中性子溶液散乱を基軸とした蛋白質の構造・ダイナミクス解析への挑戦2018

    • Author(s)
      杉山正明
    • Organizer
      第18回日本中性子科学会年会
    • Related Report
      2018 Annual Research Report
  • [Book] 実験医学 増刊号Vol.40 No.12「セントラルドグマの新常識」 『転写・翻訳の驚きの新機構と再定義されるDNA・RNA・タンパク質の世界』第2章「転写の新常識」1.「クロマチンにおける転写機構の新たな知見」2022

    • Author(s)
      鯨井智也、胡桃坂仁志
    • Total Pages
      264
    • Publisher
      羊土社
    • ISBN
      9784758104043
    • Related Report
      2022 Annual Research Report
  • [Book] 生体の化学 vol.71 No.4「ヌクレオソームによるクロマチンの構造多様性」2020

    • Author(s)
      藤田理紗、胡桃坂仁志
    • Total Pages
      96
    • Publisher
      公益財団法人金原一郎記念医学医療振興財団/医学書院
    • Related Report
      2020 Annual Research Report
  • [Book] 月刊細胞 5月号 遺伝子制御の基盤となる細胞核・クロマチン構造 「転写におけるクロマチン構造研究」2020

    • Author(s)
      鯨井智也、胡桃坂仁志
    • Total Pages
      60
    • Publisher
      ニューサイエンス社
    • Related Report
      2020 Annual Research Report
  • [Book] 相分離生物学の全貌(現代化学増刊46) 第V部 60.溶液散乱法Ⅰ:静的構造解析2020

    • Author(s)
      杉山正明
    • Total Pages
      400
    • Publisher
      東京化学同人
    • ISBN
      9784807913466
    • Related Report
      2020 Annual Research Report
  • [Book] イメージング時代の構造生命科学2020

    • Author(s)
      鯨井智也、滝沢由政、胡桃坂仁志/著 田中 啓二、若槻 壮市/編
    • Total Pages
      248
    • Publisher
      羊土社
    • ISBN
      9784758103855
    • Related Report
      2019 Annual Research Report
  • [Book] 日本の科学者「遺伝子の働きを制御するヒストン」2018

    • Author(s)
      小山昌子、胡桃坂仁志
    • Total Pages
      64
    • Publisher
      本の泉社
    • Related Report
      2018 Annual Research Report
  • [Book] あなたのタンパク質精製、大丈夫ですか?2018

    • Author(s)
      胡桃坂 仁志、有村 泰宏
    • Total Pages
      186
    • Publisher
      羊土社
    • ISBN
      9784758122382
    • Related Report
      2018 Annual Research Report
  • [Book] 教科書を書き換えろ!染色体の新常識2018

    • Author(s)
      平野 達也、胡桃坂 仁志
    • Total Pages
      214
    • Publisher
      羊土社
    • ISBN
      9784758103749
    • Related Report
      2018 Annual Research Report
  • [Book] 医学のあゆみ Vol.267, No.13「クロマチンによるエピジェネティックな転写制御」2018

    • Author(s)
      胡桃坂仁志、鯨井智也
    • Total Pages
      267
    • Publisher
      医歯薬出版
    • Related Report
      2018 Annual Research Report
  • [Remarks] 東京大学 定量生命科学研究所 胡桃坂仁志研究室

    • URL

      https://www.iqb.u-tokyo.ac.jp/kurumizakalab/

    • Related Report
      2022 Annual Research Report
  • [Remarks] 京都大学 複合原子力科学研究所 粒子線物性学研究室

    • URL

      https://www.rri.kyoto-u.ac.jp/PSlab/

    • Related Report
      2022 Annual Research Report

URL: 

Published: 2018-07-20   Modified: 2024-01-30  

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