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Protein handling by molecular chaperones

Planned Research

Project AreaProtein community: organization and maintenance of protein functions
Project/Area Number 19058004
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyoto Sangyo University (2009-2011)
Tokyo Institute of Technology (2007-2008)

Principal Investigator

YOSHIDA Masasuke  京都産業大学, 総合生命科学部, 教授 (90049073)

Co-Investigator(Kenkyū-buntansha) WATANABE Yohei  甲南大学, 理工学部, 講師 (40411839)
MOTOJIMA Fumihiro  京都産業大学, 総合生命科学部, 助教 (70372464)
NUREKI Satoshi  東京大学, 理学系研究科, 教授 (10272460)
Project Period (FY) 2007 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥109,900,000 (Direct Cost: ¥109,900,000)
Fiscal Year 2011: ¥23,100,000 (Direct Cost: ¥23,100,000)
Fiscal Year 2010: ¥23,100,000 (Direct Cost: ¥23,100,000)
Fiscal Year 2009: ¥23,100,000 (Direct Cost: ¥23,100,000)
Fiscal Year 2008: ¥23,100,000 (Direct Cost: ¥23,100,000)
Fiscal Year 2007: ¥17,500,000 (Direct Cost: ¥17,500,000)
Keywordsシャペロン / シャペロニン / GroEL / DnaK / DafA / ClpB / GroES / C1pB / FtsH / プロテアーゼ / おれたたみ / 分子シャペロン
Research Abstract

We found two kinds of new membrane chaperones. pspA repairs the leaks of ions through damaged membranes, and uncI assists membrane integration of hydrophobic c-subunit of ATP synthase. DnaK-DnaJ-DafA turns out to be inactive complex. As temperature raises, the complex dissociates and Dnak and DnaJ start to work as disaggregation chaperone in cooperation with ClpB. Polypeptide in the GroEL cage capped by GroES spends most time as tethered state. Then, it is released into the chaperonin cage or outside.

Report

(7 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report   Self-evaluation Report ( PDF )
  • 2008 Annual Research Report
  • 2007 Annual Research Report
  • Research Products

    (49 results)

All 2012 2011 2010 2009 2008 2007 Other

All Journal Article (28 results) (of which Peer Reviewed: 27 results) Presentation (18 results) Remarks (3 results)

  • [Journal Article] Revisiting the contribution of negative charges on the chaperonin cage wall to the acceleration of protein folding2012

    • Author(s)
      Motojima F, Motojima-Miyazaki Y, Yoshida M
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 109(39) Pages: 15740-5

    • Related Report
      2011 Final Research Report
  • [Journal Article] Orientation of the amino-terminal domain of ClpB affects the disaggregation of the protein2012

    • Author(s)
      Mizuno S, Nakazaki Y, Yoshida M, Watanabe YH
    • Journal Title

      FEBS J

      Volume: 279 Issue: 8 Pages: 1474-1484

    • DOI

      10.1111/j.1742-4658.2012.08540.x

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Roles of conserved arginines in ATP-binding domains of AAA+ chaperone ClpB from Thermus thermophilus2011

    • Author(s)
      Yamasaki T, Nakazaki Y, Yoshida M, Watanabe YH
    • Journal Title

      FEBS J

      Volume: 278 Issue: 13 Pages: 2395-403

    • DOI

      10.1111/j.1742-4658.2011.08167.x

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Yeast prion protein Newl can break Sup35 amyloid fibrils into fragments in an ATP-dependent manner.2011

    • Author(s)
      Inoue, Y., Kawai-Noma, S., Koike-Takeshita, A., Taguchi, H., Yoshida, M.*
    • Journal Title

      Genes to Cells

      Volume: 16 Issue: 5 Pages: 545-556

    • DOI

      10.1111/j.1365-2443.2011.01510.x

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ribosomal protein L2 associates with E.coli HtpG and activates its ATPase activity.2011

    • Author(s)
      Motojima-Miyazaki Y, Yoshida M, Motojima F.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 17 Pages: 241-245

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polypeptide in the chaperonin cage partly protrudes out and then folds inside or escapes outside.2011

    • Author(s)
      Motojima F, Yoshida M.
    • Journal Title

      EMBO J.

      Volume: 29 Pages: 4008-4019

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polypeptide in the chaperonin cage partly protrudes out and then folds inside or escapes outside2010

    • Author(s)
      Motojima F, Yoshida M
    • Journal Title

      EMBO J

      Volume: 29 Pages: 4008-19

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/20959808

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ribosomal protein L2 associates with E. coli HtpG and activates its ATPase activity2010

    • Author(s)
      Motojima-Miyazaki Y, Yoshida M, Motojima F
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 400 Pages: 241-5

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/20727857

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Temperature-dependent regulation of Thermus thermophilus DnaK/DnaJ chaperones by DafA protein2009

    • Author(s)
      Mizutani T, Nemoto S, Yoshida M, Watanabe YH
    • Journal Title

      Genes Cells

      Volume: 14 Pages: 1405-13

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/19930469

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Probing open conformation of GroEL rings by cross-linking reveals single and double open ring structures of GroEL in ADP and ATP2009

    • Author(s)
      Nojima T, Yoshida M
    • Journal Title

      Biol Chem

      Volume: 284 Pages: 22834-9

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/19520865

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Stability of the two wings of the coiled-coil domain of ClpB chaperone is critical for its disaggregation activity2009

    • Author(s)
      Watanabe YH, Nakazaki Y, Suno R, Yoshida M
    • Journal Title

      Biochem J

      Volume: 421 Pages: 71-7

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/19351326

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Probing open conformation of GroEL rings by cross-linking reveals single and double open ring structures of GroEL in ADP and ATP.2009

    • Author(s)
      Nojima T, Yoshida M.
    • Journal Title

      J Biol Chem. 284(34)

      Pages: 22834-9

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Stability of the two wings of the coiled-coil domain of ClpB chaperone is critical for its disaggregation activity.2009

    • Author(s)
      Watanabe YH, Nakazaki Y, Suno R, Yoshida M.
    • Journal Title

      Biochem J. 421(1)

      Pages: 71-7

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] Stability of the two wings of the coiled-coil domain of ClpB chaperone is critical for its disaggregation activity.2009

    • Author(s)
      Watanabe YH, Nakazaki Y, Suno R, Yoshida M.
    • Journal Title

      Biochim Biophys Acta.

      Volume: 421 Pages: 71-77

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Probing open conformation of GroEL rings by cross-linking reveals single and double open ring structures of GroEL in ADP and ATP.2009

    • Author(s)
      Nojima T, Yoshida M.
    • Journal Title

      J Biol Chem.

      Volume: 284 Pages: 22834-22839

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Temperature-dependent regulation of Thermus thermophilus DnaK/DnaJ chaperones by DafA protein.2009

    • Author(s)
      Mizutani T, Nemoto S, Yoshida M, Watanabe YH.
    • Journal Title

      Genes Cells.

      Volume: 14 Pages: 1405-1413

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Determination of the Number of Active GroES Subunits in the Fused Heptamer GroES Required for Interactions with GroEL2008

    • Author(s)
      Nojima T, Murayama S, Yoshida M, Motojima F
    • Journal Title

      J. Biol. Chem

      Volume: 283 Pages: 18385-92

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/18430731

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Revisiting the GroEL-GroES reaction cycle via the symmetrical intermediate implied by novel aspects of the GroEL (D398A) mutant2008

    • Author(s)
      Koike-Takeshita A, Yoshida M, Taguchi H
    • Journal Title

      J. Biol. Chem

      Volume: 283 Pages: 23774-81

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/18567584

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] UncI protein can mediate ring-assembly of c-subunits of FoF1-ATP synthase in vitro2008

    • Author(s)
      Ozaki Y, Suzuki T, Kuruma Y, Ueda T, Yoshida M
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 67(3) Pages: 663-6

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/18182163

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Determination of the Number of Active GroES Subunits in the Fused Heptamer GroES Required for Interactions with GroEL2008

    • Author(s)
      Nojima T, Murayama S, Yoshida M, Motojima F.
    • Journal Title

      J. Biol. Chem. 283

      Pages: 18385-18392

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] UncI protein can mediate ring-assembly of c-subunits of FoF1-ATP synthase in vitro2008

    • Author(s)
      Ozaki Y, Suzuki T, Kuruma Y, Ueda T, Yoshida M.
    • Journal Title

      Biochem Biophys Res Commun. 367(3)

      Pages: 663-6

    • Related Report
      2009 Self-evaluation Report
    • Peer Reviewed
  • [Journal Article] UncI protein can mediate ring-assembly of c-subunits of FoF1-ATP, synthase in vitro2008

    • Author(s)
      Ozaki Y, Suzuki T, Kuruma Y, Ueda T. Yoshida M
    • Journal Title

      Biochem Biophys Res Commun 1367(3)

      Pages: 663-6

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Revisiting the GroEL-GroES reaction cycle via the symmetrical inter mediate implied by novel aspects of the GroEL (D398A) mutant2008

    • Author(s)
      Koike-Takeshita A, Yoshida M, Taguchi H
    • Journal Title

      J. Biol. Chem 283(35)

      Pages: 23774-81

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Determination of the Number of Active GroES Subunits in the Fused Heptamer GroES Reauired for Interactions with GroEL2008

    • Author(s)
      Nojima T, Murayama S, Yoshida M, Motojima F
    • Journal Title

      J. Biol. Chem 283

      Pages: 18385-92

    • Related Report
      2008 Annual Research Report
    • Peer Reviewed
  • [Journal Article] UncI protein can mediate ring-assembly of c-subunits of FoFl-ATP synthase in vitro.2008

    • Author(s)
      Ozaki Y, Suzuki T, Kuruma Y, Ueda T, Yoshida M.
    • Journal Title

      Biochem Biophys Res Commun 367

      Pages: 663-666

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The product of uncI gene in F1Fo-ATP synthase operon plays a chaperone-like role to assist c-ring assembly2007

    • Author(s)
      Suzuki T, Ozaki Y, Sone N, Feniouk BA, Yoshida M
    • Journal Title

      Proc Natl Acad Sci USA

      Volume: 104(52) Pages: 20776-81

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/18083842

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes2007

    • Author(s)
      Kobayashi R, Suzuki T, Yoshida M
    • Journal Title

      Mol Microbiol

      Volume: 66 Pages: 100-9

    • URL

      http://www.ncbi.nlm.nih.gov/pubmed/18183492

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes.2007

    • Author(s)
      Kobayashi R, Suzuki T, Yoshida M.
    • Journal Title

      Mol Microbiol. 66

      Pages: 100-109

    • Related Report
      2007 Annual Research Report
    • Peer Reviewed
  • [Presentation] "Football" with tethered polypeptide; renovation of chaperonin mechanism2012

    • Author(s)
      M. Yoshida, T. Ando, D. Yamamoto, F. Motojima
    • Organizer
      EMBL symposium
    • Place of Presentation
      Heiderburg, Germany
    • Year and Date
      2012-09-20
    • Related Report
      2011 Final Research Report
  • [Presentation] Tethering mechanism of chaperonin2011

    • Author(s)
      Motojima F, Motojima-Miyazaki Y, Tanaka S, Yoshida M
    • Organizer
      Cold Spring Harbor at Suzhou
    • Place of Presentation
      China
    • Year and Date
      2011-09-27
    • Related Report
      2011 Final Research Report
  • [Presentation] Tethering mechanism of chaperonin2011

    • Author(s)
      Motojima F, Motojima-Miyazaki Y, Tanaka S, Yoshida M
    • Organizer
      Cold Spring Harbor at Suzhou
    • Place of Presentation
      中国 蘇州(招待講演)
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Polypeptide in the chaperonin cage partly protrudes out and then folds inside or escapes outside2010

    • Author(s)
      Motojima F, Yoshida M
    • Organizer
      ISCP Nara
    • Place of Presentation
      Nara, Japan
    • Year and Date
      2010-09-17
    • Related Report
      2011 Final Research Report
  • [Presentation] Polypeptide in the chaperonin cage partly protrudes out and then folds inside or escapes outside.2010

    • Author(s)
      Yoshida M., Motojima F.
    • Organizer
      The 3^<rd> International Symposium on Protein Community
    • Place of Presentation
      奈良ホテル日航
    • Year and Date
      2010-09-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] Fold or escape; fates of substrate polypeptide in the critical GroEL/GroES intermediate2010

    • Author(s)
      Motojima F, Yoshida M
    • Organizer
      Cold Spring Harbor Meeting
    • Place of Presentation
      USA
    • Year and Date
      2010-05-04
    • Related Report
      2011 Final Research Report
  • [Presentation] The folding pathway of blue fluorescent protein in spontaneous and chaperonin-assisted folding2010

    • Author(s)
      Motojima F, Yoshida M
    • Organizer
      FASEB SRC, Protein folding in the cell
    • Place of Presentation
      Saxtons River, Vermont. USA
    • Related Report
      2011 Final Research Report
  • [Presentation] Ribosome protein L2 is a client protein for E. coli HtpG2009

    • Author(s)
      Miyazaki, Y., Motojima, F., Yoshida, M.
    • Organizer
      日本生化学会82回年会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] The ATPase cycleof chaperonin gives another chance of the assisted folding to the escaped protein from the chaperonin cage2009

    • Author(s)
      Motojima, F., Yoshida, M.
    • Organizer
      日本生化学会82回年会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Analysis of substrate translocation activity of ClpB mutants.2009

    • Author(s)
      Nakazaki, Y., Mizuno, S., Watanabe, K., Yoshida, M., Watanabe, Y.
    • Organizer
      日本生化学会82回年会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] Functional analysis of flexibility of GroES mobile loop.2009

    • Author(s)
      Nojima, T., Yoshida, M.
    • Organizer
      日本生化学会82回年会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2009 Self-evaluation Report
  • [Presentation] シャペロニンGroELの新しいモデル2009

    • Author(s)
      元島史尋、吉田賢右
    • Organizer
      生化学会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2009-10-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] 好熱菌のClpP結合型ClpB変異体2008

    • Author(s)
      中崎洋介, 寿野良二, 吉田賢右, 渡辺洋平
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2008-12-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] 好熱菌DnaK-DnaJ複合体の安定性とシャペロン活性2008

    • Author(s)
      水谷正, 根本正平, 吉田賢右, 渡辺洋平
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2008-12-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] 分子シャペロンClpBのN末端ドメインの動きはいかにして脱凝集過程を促進するか2008

    • Author(s)
      水野さやか, 中崎洋介, 吉田賢右, 渡辺洋平
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2008-12-09
    • Related Report
      2008 Annual Research Report
  • [Presentation] 変性タンパク質がGroEL.に結合した状態がシャペロニン依存的フォールディングにおける律速中間体である2008

    • Author(s)
      Motojima, F., Yoshida, M
    • Organizer
      日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2008-12-07
    • Related Report
      2008 Annual Research Report
  • [Presentation] New Membrane Chaperones2008

    • Author(s)
      Kobayashi R, Ozaki Y, Suzuki T, Yoshida M
    • Organizer
      Cold Spring Harbor Meeting
    • Place of Presentation
      USA
    • Year and Date
      2008-05-02
    • Related Report
      2011 Final Research Report
  • [Presentation] GroEL/ES-assisted folding of bfp starts from an extended state and is faster than free folding2008

    • Author(s)
      Motojima F, Yoshida M
    • Organizer
      Cold Spring Harbor Meeting
    • Place of Presentation
      USA
    • Year and Date
      2008-05-02
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.cc.kyoto-su.ac.jp/~fmotojim/index-j.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.cc.kyoto-su.ac.jp/~fmotojim/index-j.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.res.titech.ac.jp/-seibutu/main_.html

    • Related Report
      2008 Annual Research Report

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Published: 2007-04-01   Modified: 2018-03-28  

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