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Innovations to culturing the difficult-to-culture microorganisms

Planned Research

Project AreaPost-Koch Ecology: The next-era microbial ecology that elucidates the super-terrestrial organism system
Project/Area Number 19H05683
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

Nakai Ryosuke  国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 (90637802)

Co-Investigator(Kenkyū-buntansha) 玉木 秀幸  国立研究開発法人産業技術総合研究所, 生命工学領域, 研究グループ長 (00421842)
草田 裕之  国立研究開発法人産業技術総合研究所, 生命工学領域, 主任研究員 (00827537)
Project Period (FY) 2019-06-28 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥90,740,000 (Direct Cost: ¥69,800,000、Indirect Cost: ¥20,940,000)
Fiscal Year 2023: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2022: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2021: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2020: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2019: ¥23,660,000 (Direct Cost: ¥18,200,000、Indirect Cost: ¥5,460,000)
Keywords微生物 / 細菌 / 分離培養 / 生物資源 / 系統分類 / 多様性 / 生物多様性 / 遺伝資源 / バクテリア / 遺伝子資源
Outline of Research at the Start

本研究では、ポストコッホ微生物の獲得を目的として、古典的なコッホの培養法の抜本的再考を通じて得た培養ノウハウをポストコッホ技術の開発(評価・改良)に活かし、微生物の培養技術の革新を図る。特に、微生物の培養化効率の向上に関わる3つの研究、具体的には項目1「コッホの微生物学技術の問題点の抽出」、項目2「フィールドオリエンテッドな情報に基づく培養条件の最適化」、および項目3「ポストコッホ技術の融合で導く標的微生物の選択培養」を領域内の有機的な連携によって推進するとともに、本領域が設定するモデル圃場からのメタ細菌の獲得と機能開拓の達成を図る。

Outline of Final Research Achievements

The advent of high-throughput “omics” technology has substantially expanded our knowledge of microbial diversity. Despite advancements in sequencing technologies, most microorganisms remain unculturable in the laboratory. To explore such unseen microorganisms beyond their genes/genomes, we have developed novel cultivation strategies in the scientific project, “Post-Koch Ecology.” Our group aimed to elucidate “cultivation tips” to improve the cultivation efficiency of these difficult-to-culture bacteria. We isolated approximately 500 phylogenetically novel bacterial strains from upland soils under various media conditions. Based on the efficacy of each tested culture medium, we designed new cultivation conditions and applied a gel-filled microwell array device as a novel cultivation technology for high-throughput mining of uncultured bacteria. The novel strains were deposited at the RIKEN BRC as bioresources and made available for future academic and industrial research.

Academic Significance and Societal Importance of the Research Achievements

本研究では、コッホによる従来型の寒天平板培養の抜本的再考を通じて得た培養ノウハウをマイクロ培養アレイデバイス(ポストコッホ技術)の活用に活かし、ハイスループットランダム隔離培養法の基盤を確立した。今後、本技術を用いてポストコッホ微生物を含む多様な細菌(メタ細菌)の機能を解析することで、ポストコッホ機能生態学を介した生物学や生態学への学術的貢献だけでなく、健康・医療分野、環境分野および食料・農業分野における諸課題の解決に貢献することが期待される。

Report

(6 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (83 results)

All 2024 2023 2022 2021 2020 2019 Other

All Int'l Joint Research (2 results) Journal Article (42 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 38 results,  Open Access: 40 results) Presentation (36 results) (of which Int'l Joint Research: 4 results,  Invited: 22 results) Book (1 results) Remarks (1 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] インスブルック大学(オーストリア)

    • Related Report
      2020 Annual Research Report
  • [Int'l Joint Research] クイーンズランド大学(オーストラリア)

    • Related Report
      2020 Annual Research Report
  • [Journal Article] The fatal case of “Pigmentibacter” bacteremia following aspiration pneumonia in elderly patient2024

    • Author(s)
      Shigeru Azuma*, Hitoshi Kawasuji*, Ryosuke Nakai* (*equal contribution), Hiroshi Yamada, Yoshihiro Yoshida, Hiroyuki Kawahara, Mai Suzuki, Shunsuke Mori, Masayoshi Hirata, Kazushige Sugie, Hideki Niimi, Yoshitomo Morinaga, Yoshihiro Yamamoto
    • Journal Title

      Journal of Infection and Chemotherapy

      Volume: In Press, Corrected Proof Issue: 8 Pages: 1-6

    • DOI

      10.1016/j.jiac.2024.01.019

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete genome sequence of Opitutales bacterium strain ASA1, isolated from soil2024

    • Author(s)
      Islam Md. Samiul、Yamamoto Kyosuke、Morita Naoki、Yumoto Isao、Kato Souichiro、Nakai Ryosuke、Igarashi Kensuke
    • Journal Title

      Microbiology Resource Announcements

      Volume: 13 Issue: 3

    • DOI

      10.1128/mra.01032-23

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Diversity profiling of microbiomes associated with selected alpine plants and lichens from Mt. Suisho, Japan2024

    • Author(s)
      Ryosuke Nakai, Shouno Munekawa, Yoshinori Murai, Yoshihito Ohmura, Kenichiro Tani
    • Journal Title

      Microbiology Resource Announcements

      Volume: 13 Issue: 3

    • DOI

      10.1128/mra.01270-23

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Temporal and fertilizer-dependent dynamics of soil bacterial communities in buckwheat fields under long-term management2024

    • Author(s)
      Susumu Morigasaki, Motomu Matsui, Iwao Ohtsu, Yuki Doi, Yusuke Kawano, Ryosuke Nakai, Wataru Iwasaki, Hisayoshi Hayashi, Naoki Takaya
    • Journal Title

      Scientific Reports

      Volume: 14 Issue: 1 Pages: 9896-9896

    • DOI

      10.1038/s41598-024-60655-w

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Whole-Genome Sequences of Three Psychrotolerant Mycolicibacterium sp. Strains Isolated from Antarctic Soil2023

    • Author(s)
      Sho Shimada, Kotaro Aoki, Ryosuke Nakai, Shota Miura, Kohji Komori, Sakae Kudoh, Satoshi Imura, Yoshikazu Ishii, Kazuhiro Tateda
    • Journal Title

      Microbiology Resource Announcements

      Volume: 12 Issue: 6

    • DOI

      10.1128/mra.00123-23

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Polynucleobacter sp. Strain TUM22923, Isolated from Antarctic Lake Sediment2023

    • Author(s)
      Sho Shimada*, Ryosuke Nakai* (*equal contribution), Kotaro Aoki, Shota Miura, Kohji Komori, Sakae Kudoh, Satoshi Imura, Yoshikazu Ishii, Kazuhiro Tateda
    • Journal Title

      Microbiology Resource Announcements

      Volume: 12 Issue: 7

    • DOI

      10.1128/mra.00146-23

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Flavobacterium sp. Strain GSB-24, Isolated from inside Dendrobium Roots2023

    • Author(s)
      Nishioka Tomoki、Morinaga Kana、Tamaki Hideyuki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 12 Issue: 3

    • DOI

      10.1128/mra.01343-22

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Spontaneous Cell Lysis by <i>Pelomonas saccharophila</i> MRB3 Provides Plant-Available Macronutrients in Hydroponic Growth Media and Accelerates Biomass Production of Duckweed2023

    • Author(s)
      Ishizawa Hidehiro、Kaji Yukiko、Shimizu Yuki、Kuroda Masashi、Inoue Daisuke、Makino Ayaka、Nakai Ryosuke、Tamaki Hideyuki、Morikawa Masaaki、Ike Michihiko
    • Journal Title

      Journal of Water and Environment Technology

      Volume: 21 Issue: 1 Pages: 49-58

    • DOI

      10.2965/jwet.22-054

    • ISSN
      1348-2165
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete Genome Sequence of Dyella sp. Strain GSA-30, a Predominant Endophytic Bacterium of Dendrobium Plants2023

    • Author(s)
      Nishioka Tomoki、Morinaga Kana、Tamaki Hideyuki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 12 Issue: 4

    • DOI

      10.1128/mra.01338-22

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Polymer-based chemical-nose systems for optical-pattern recognition of gut microbiota2022

    • Author(s)
      Tomita Shunsuke、Kusada Hiroyuki、Kojima Naoshi、Ishihara Sayaka、Miyazaki Koyomi、Tamaki Hideyuki、Kurita Ryoji
    • Journal Title

      Chemical Science

      Volume: 13 Issue: 20 Pages: 5830-5837

    • DOI

      10.1039/d2sc00510g

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bile Salt Hydrolases with Extended Substrate Specificity Confer a High Level of Resistance to Bile Toxicity on Atopobiaceae Bacteria2022

    • Author(s)
      Morinaga Kana、Kusada Hiroyuki、Tamaki Hideyuki
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 23 Issue: 18 Pages: 10980-10980

    • DOI

      10.3390/ijms231810980

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Improved Cultivation and Isolation of Diverse Endophytic Bacteria Inhabiting Dendrobium Roots by Using Simply Modified Agar Media2022

    • Author(s)
      Nishioka Tomoki、Tamaki Hideyuki
    • Journal Title

      Microbiology Spectrum

      Volume: 10 Issue: 6

    • DOI

      10.1128/spectrum.02238-22

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bile Salt Hydrolase Degrades β-Lactam Antibiotics and Confers Antibiotic Resistance on Lactobacillus paragasseri2022

    • Author(s)
      Hiroyuki Kusada, Masanori Arita, Masanori Tohno, Hideyuki Tamaki
    • Journal Title

      Frontiers in Microbiology

      Volume: 13 Pages: 858263-858263

    • DOI

      10.3389/fmicb.2022.858263

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation of Aquatic Plant Growth-Promoting Bacteria for the Floating Plant Duckweed (Lemna minor)2022

    • Author(s)
      Ayaka Makino, Ryosuke Nakai, Yasuko Yoneda, Tadashi Toyama, Yasuhiro Tanaka, Xian-Ying Meng, Kazuhiro Mori, Michihiko Ike, Masaaki Morikawa, Yoichi Kamagata and Hideyuki Tamaki
    • Journal Title

      Microorganisms

      Volume: 10 Issue: 8 Pages: 1564-1564

    • DOI

      10.3390/microorganisms10081564

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Microbiomic Analysis of Bacteria Associated with Rock Tripe Lichens in Continental and Maritime Antarctic Regions2022

    • Author(s)
      He Zichen、Naganuma Takeshi、Nakai Ryosuke、Imura Satoshi、Tsujimoto Megumu、Convey Peter
    • Journal Title

      Journal of Fungi

      Volume: 8 Issue: 8 Pages: 817-817

    • DOI

      10.3390/jof8080817

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Phylotypic Diversity of Bacteria Associated with Speleothems of a Silicate Cave in a Guiana Shield Tepui2022

    • Author(s)
      Liu Qi、He Zichen、Naganuma Takeshi、Nakai Ryosuke、Rodrguez Luz Mara、Carreo Rafael、Urbani Franco
    • Journal Title

      Microorganisms

      Volume: 10 Issue: 7 Pages: 1395-1395

    • DOI

      10.3390/microorganisms10071395

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Innovations to Culturing the Unseen Microorganisms2022

    • Author(s)
      中井 亮佑、草田 裕之、玉木 秀幸
    • Journal Title

      Journal of Environmental Biotechnology

      Volume: 22 Issue: 1 Pages: 75-80

    • DOI

      10.50963/jenvbio.22.1_75

    • ISSN
      1347-1856, 2436-5041
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] マイクロバイオーム解析で明らかとなった巨大マリモの内部の微生物たち2022

    • Author(s)
      中井 亮佑、若菜 勇、仁木 宏典
    • Journal Title

      化学と生物

      Volume: 60 Pages: 492-495

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 耐熱性プロバイオティクス乳酸菌由来の新規な耐熱性胆汁酸塩加水分解酵素の発見2022

    • Author(s)
      草田 裕之、玉木 秀幸
    • Journal Title

      月刊バイオインダストリー

      Volume: 39 Pages: 27-34

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Draft Genome Sequence of Bryobacteraceae Strain F-1832022

    • Author(s)
      Yamamoto Kyosuke、Yoneda Yasuko、Makino Ayaka、Tanaka Yasuhiro、Meng Xian-Ying、Hashimoto Junko、Shin-ya Kazuo、Satoh Noriyuki、Fujie Manabu、Toyama Tadashi、Mori Kazuhiro、Ike Michihiko、Morikawa Masaaki、Kamagata Yoichi、Tamaki Hideyuki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 11 Issue: 1

    • DOI

      10.1128/mra.00453-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation of a Highly Thermostable Bile Salt Hydrolase With Broad Substrate Specificity From Lactobacillus paragasseri2022

    • Author(s)
      Kusada Hiroyuki、Arita Masanori、Tohno Masanori、Tamaki Hideyuki
    • Journal Title

      Frontiers in Microbiology

      Volume: 13 Pages: 810872-810872

    • DOI

      10.3389/fmicb.2022.810872

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence of Luteitalea sp. Strain TBR-222022

    • Author(s)
      Yamamoto Kyosuke、Yoneda Yasuko、Makino Ayaka、Tanaka Yasuhiro、Meng Xian-Ying、Hashimoto Junko、Shin-ya Kazuo、Satoh Noriyuki、Fujie Manabu、Toyama Tadashi、Mori Kazuhiro、Ike Michihiko、Morikawa Masaaki、Kamagata Yoichi、Tamaki Hideyuki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 11 Issue: 2

    • DOI

      10.1128/mra.00455-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Identification of Bile Salt Hydrolase and Bile Salt Resistance in a Probiotic Bacterium Lactobacillus gasseri JCM1131T2021

    • Author(s)
      Kusada Hiroyuki、Morinaga Kana、Tamaki Hideyuki
    • Journal Title

      Microorganisms

      Volume: 9 Issue: 5 Pages: 1011-1011

    • DOI

      10.3390/microorganisms9051011

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel Plant-Associated Acidobacteria Promotes Growth of Common Floating Aquatic Plants, Duckweeds2021

    • Author(s)
      Yoneda Yasuko、Yamamoto Kyosuke、Makino Ayaka、Tanaka Yasuhiro、Meng Xian-Ying、Hashimoto Junko、Shin-ya Kazuo、Satoh Noriyuki、Fujie Manabu、Toyama Tadashi、Mori Kazuhiro、Ike Michihiko、Morikawa Masaaki、Kamagata Yoichi、Tamaki Hideyuki
    • Journal Title

      Microorganisms

      Volume: 9 Issue: 6 Pages: 1133-1133

    • DOI

      10.3390/microorganisms9061133

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequence of Novel Filterable Rhodospirillales Bacterium Strain TMPK1, Isolated from Soil2021

    • Author(s)
      Nakai Ryosuke、Kusada Hiroyuki、Sassa Fumihiro、Morigasaki Susumu、Hayashi Hisayoshi、Takaya Naoki、Tamaki Hideyuki
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10 Issue: 28

    • DOI

      10.1128/mra.00393-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of Terrihabitans soli gen. nov., sp. nov., a Novel 0.2 μm-Filterable Soil Bacterium Belonging to a Widely Distributed Lineage of Hyphomicrobiales (Rhizobiales)2021

    • Author(s)
      Nakai Ryosuke、Naganuma Takeshi、Tazato Nozomi、Kunihiro Tadao、Morohoshi Sho、Koide Tomomi、Kusada Hiroyuki、Tamaki Hideyuki、Narihiro Takashi
    • Journal Title

      Diversity

      Volume: 13 Issue: 9 Pages: 422-422

    • DOI

      10.3390/d13090422

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of the First Cultured Psychrotolerant Representative of Legionella from Antarctica Reveals Its Unique Genome Structure2021

    • Author(s)
      Shimada Sho*、Nakai Ryosuke* (*equal contribution)、Aoki Kotaro、Kudoh Sakae、Imura Satoshi、Shimoeda Norifumi、Ohno Giichiro、Watanabe Kentaro、Miyazaki Yasunari、Ishii Yoshikazu、Tateda Kazuhiro
    • Journal Title

      Microbiology Spectrum

      Volume: 9 Issue: 2

    • DOI

      10.1128/spectrum.00424-21

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Isolation and Characterization of Novel Plant Growth-Promoting Bacteria from the Fronds of Duckweed2021

    • Author(s)
      Tomoki Iwashita、Yasuhiro Tanaka、Hideyuki Tamaki、Ryosuke Nakai、Yasuko Yoneda、Ayaka Makino、Tadashi Toyama、Yoichi Kamagata、Masaaki Morikawa、Kazuhiro Mori
    • Journal Title

      Japanese Journal of Water Treatment Biology

      Volume: 57 Issue: 1 Pages: 1-9

    • DOI

      10.2521/jswtb.57.1

    • NAID

      130007998572

    • ISSN
      0910-6758, 1881-0438
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Chasing Waterborne Pathogens in Antarctic Human-Made and Natural Environments, with Special Reference to Legionella spp.2021

    • Author(s)
      Shimada Sho、Nakai Ryosuke、Aoki Kotaro、Shimoeda Norifumi、Ohno Giichiro、Kudoh Sakae、Imura Satoshi、Watanabe Kentaro、Miyazaki Yasunari、Ishii Yoshikazu、Tateda Kazuhiro
    • Journal Title

      Applied and Environmental Microbiology

      Volume: 87 Issue: 2

    • DOI

      10.1128/aem.02247-20

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Sakamoto S, Nobu MK, Mayumi D, Tamazawa S, Kusada H, Yonebayashi H, Iwama H, Ikarashi M, Wakayama T, Maeda H, Sakata S, Tamura T, Nomura N,2021

    • Author(s)
      Sakamoto S, Nobu MK, Mayumi D, Tamazawa S, Kusada H, Yonebayashi H, Iwama H, Ikarashi M, Wakayama T, Maeda H, Sakata S, Tamura T, Nomura N,
    • Journal Title

      Syst. Appl. Microbiol.

      Volume: 44 Issue: 1 Pages: 126154-126154

    • DOI

      10.1016/j.syapm.2020.126154

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Parallel Evolution of Enhanced Biofilm Formation and Phage-Resistance in Pseudomonas aeruginosa during Adaptation Process in Spatially Heterogeneous Environments2021

    • Author(s)
      Yamamoto Kyosuke、Kusada Hiroyuki、Kamagata Yoichi、Tamaki Hideyuki
    • Journal Title

      Microorganisms

      Volume: 9 Issue: 3 Pages: 569-569

    • DOI

      10.3390/microorganisms9030569

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Size Matters: Ultra-small and Filterable Microorganisms in the Environment2020

    • Author(s)
      Nakai Ryosuke
    • Journal Title

      Microbes and Environments

      Volume: 35 Issue: 2 Pages: n/a

    • DOI

      10.1264/jsme2.ME20025

    • NAID

      130007851660

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cell Plasticity and Genomic Structure of a Novel Filterable Rhizobiales Bacterium that Belongs to a Widely Distributed Lineage2020

    • Author(s)
      Nakai Ryosuke、Naganuma Takeshi、Tazato Nozomi、Morohoshi Sho、Koide Tomomi
    • Journal Title

      Microorganisms

      Volume: 8 Issue: 9 Pages: 1373-1373

    • DOI

      10.3390/microorganisms8091373

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Polymer-Based Chemical Nose Systems for Optical Pattern Recognition of Gut Microbiota2020

    • Author(s)
      Tomita Shunsuke、Kusada Hiroyuki、Kojima Naoshi、Ishihara Sayaka、Miyazaki Koyomi、Tamaki Hideyuki、Kurita Ryoji
    • Journal Title

      ChemRxiv

      Volume: -

    • DOI

      10.26434/chemrxiv.12649826.v1

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] Comparative Analysis of Microbial Communities in Fronds and Roots of Three Duckweed Species: Spirodela polyrhiza, Lemna minor, and Lemna aequinoctialis2020

    • Author(s)
      Tomoki Iwashita, Yasuhiro Tanaka, Hideyuki Tamaki, Yasuko Yoneda, Ayaka Makino, Yuka Tateno, Yan Li, Tadashi Toyama, Yoichi Kamagata, Kazuhiro Mori
    • Journal Title

      Microbes and Environments

      Volume: 35 Issue: 3 Pages: n/a-n/a

    • DOI

      10.1264/jsme2.me20081

    • NAID

      130007877310

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities2020

    • Author(s)
      Waite David W、Chuvochina Maria、Pelikan Claus、Parks Donovan H、Yilmaz Pelin、Wagner Michael、Loy Alexander、Naganuma Takeshi、Nakai Ryosuke、Whitman William B、Hahn Martin W、Kuever Jan、Hugenholtz Philip
    • Journal Title

      International Journal of Systematic and Evolutionary Microbiology

      Volume: 70 Issue: 11 Pages: 5972-6016

    • DOI

      10.1099/ijsem.0.004213

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bacterium Lacking a Known Gene for Retinal Biosynthesis Constructs Functional Rhodopsins2020

    • Author(s)
      Nakajima Yu、Kojima Keiichi、Kashiyama Yuichiro、Doi Satoko、Nakai Ryosuke、Sudo Yuki、Kogure Kazuhiro、Yoshizawa Susumu
    • Journal Title

      Microbes and Environments

      Volume: 35 Issue: 4 Pages: n/a-n/a

    • DOI

      10.1264/jsme2.me20085

    • NAID

      130007950468

    • Related Report
      2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 微生物間相互作用の遮断と抗生物質耐性を紐付ける未知微生物群ならびに両機能性酵素の発見2020

    • Author(s)
      草田裕之、玉木秀幸
    • Journal Title

      日本生物工学誌

      Volume: 98 Pages: 296-299

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] 未知の微生物を"培養"して新たな生物機能を探る2020

    • Author(s)
      玉木秀幸
    • Journal Title

      バイオサイエンスとインダストリー (B&I)

      Volume: 78 Pages: 458-459

    • Related Report
      2020 Annual Research Report
  • [Journal Article] 微生物の世界に新しい「門」が誕生! 砂漠で見つけた超すごいやつ2020

    • Author(s)
      中井亮佑、長沼毅
    • Journal Title

      講談社ブルーバックス・ウェブ

      Volume: 2020.11.17 Pages: 1-3

    • Related Report
      2020 Annual Research Report
    • Open Access
  • [Journal Article] Complete Genome Sequence of Novel Psychrotolerant Legionella Strain TUM19329, Isolated from Antarctic Lake Sediment2020

    • Author(s)
      Shimada Sho、Nakai Ryosuke、Aoki Kotaro、Shimoeda Norifumi、Ohno Giichiro、Miyazaki Yasunari、Kudoh Sakae、Imura Satoshi、Watanabe Kentaro、Ishii Yoshikazu、Tateda Kazuhiro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9 Issue: 16

    • DOI

      10.1128/mra.00253-20

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cultivation Renaissance in the Post-Metagenomics Era: Combining the New and Old2019

    • Author(s)
      Tamaki Hideyuki
    • Journal Title

      Microbes and Environments

      Volume: 34 Issue: 2 Pages: 117-120

    • DOI

      10.1264/jsme2.ME3402rh

    • NAID

      130007668647

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 精密ろ過膜を通り抜ける極小未知微生物を見る・知る・探る2024

    • Author(s)
      中井 亮佑
    • Organizer
      大隅基礎科学創成財団 微生物コンソーシアム
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] とっても小さい微生物ダークマターは何者か?2023

    • Author(s)
      中井 亮佑
    • Organizer
      第75回日本生物工学会100周年記念大会 ランチョンセミナー
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] 精密ろ過フィルターを通り抜ける極小細菌を見る・知る・探る2023

    • Author(s)
      中井 亮佑
    • Organizer
      日本防菌防黴学会第50回年次大会 シンポジウム2 培養困難な微生物の最新研究
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を”培養”して新たな生物機能を探る -バイオものづくり革命時代の微生物遺伝子資源探索研究-2023

    • Author(s)
      玉木 秀幸
    • Organizer
      LS-BT 2023講演会
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を”培養”して新たな生物機能を探る -Cultivation Renaissance in the post metagenomic era-2023

    • Author(s)
      玉木 秀幸
    • Organizer
      第29回日本微生物資源学会シンポジウム
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] Cultivation renaissance for gut microbiome research in the post-metagenomic era2023

    • Author(s)
      Hideyuki Tamaki
    • Organizer
      第27回日本腸内細菌学会学術集会 国際シンポジウム
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] マリモの大型化に関与する微生物群集2023

    • Author(s)
      中井 亮佑、仁木 宏典
    • Organizer
      国立遺伝学研究所・マリモ研究会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を"培養"して新たな生物機能を探る-未利用微生物遺伝子資源のバイオ産業への利活用-2023

    • Author(s)
      玉木 秀幸
    • Organizer
      九州経済産業局・環境・エネルギー産業ビジネスセミナー ~バイオの力で世界を変える!微生物活用で始める新規事業~
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 南極バクテリアの生態学2022

    • Author(s)
      中井 亮佑
    • Organizer
      慶應義塾大学・南極生態学 特別講義
    • Related Report
      2022 Annual Research Report
  • [Presentation] 水生植物ウキクサの成長を促進する新規Verrucomicrobiota門細菌hF2-5株の系統と生理特性2022

    • Author(s)
      牧野 彩花、中井 亮佑、田中 靖浩、森川 正章、鎌形 洋一、玉木 秀幸
    • Organizer
      日本微生物生態学会第35回大会
    • Related Report
      2022 Annual Research Report
  • [Presentation] Spontaneous Cell Lysis by Pelomonas saccharophila MRB3 Provides Plant-Available Macronutrients in Hydroponic Growth Media and Accelerates Biomass Production of Duckweed2022

    • Author(s)
      Hidehiro Ishizawa, Yukiko Kaji, Yuki Shimizu, Masashi Kuroda, Daisuke Inoue, Ayaka Makino, Ryosuke Nakai, Hideyuki Tamaki, Masaaki Morikawa, Michihiko Ike
    • Organizer
      Japan Society on Water Environment・The Water and Environment Technology Conference Online 2022 (WET2022)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Bacterial microbiota associated with Umbilicaria spp. lichens in continental and maritime Antarctic, Arctic and Alpine regions2022

    • Author(s)
      Zichen He, Takeshi Naganuma, Ryosuke Nakai, Satoshi Imura, Megumu Tsujimoto, Peter Convey
    • Organizer
      National Institute of Polar Research・The 13th Symposium on Polar Science
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cultivation Renaissance: 未知の微生物を”培養”して新たな生命機能を探る2022

    • Author(s)
      玉木 秀幸
    • Organizer
      先端バイオ工学推進機構・「化学・素材・燃料分科会」第13回会合講演会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を"培養"して新たな生物機能を探る -未利用微生物遺伝子資源開拓と利活用に向けて-2022

    • Author(s)
      玉木 秀幸
    • Organizer
      第74回日本生物工学会大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Cultivation Renaissance: 未知の微生物を"培養"して新たな生命機能を探る2022

    • Author(s)
      玉木秀幸
    • Organizer
      第69会日本放線菌学会学術講演会
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を"培養"して新たな生命機能を探る2021

    • Author(s)
      玉木秀幸
    • Organizer
      ACT-X「環境とバイオテクノロジー」領域-新学術領域「ポストコッホ生態」 合同シンポジウム
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 胆汁酸耐性能を有する耐熱性プロバイオティクス乳酸菌と耐熱性胆汁酸分解酵素の発見2021

    • Author(s)
      草田裕之、玉木秀幸
    • Organizer
      BioJapan2021
    • Related Report
      2021 Annual Research Report
  • [Presentation] 耐熱性プロバイオティクス乳酸菌の胆汁酸耐性機構の解明2021

    • Author(s)
      草田裕之、玉木秀幸
    • Organizer
      BioJapan2021
    • Related Report
      2021 Annual Research Report
  • [Presentation] Cultivation Renaissance in the Post-Metagenomics Era: Combining the New and Old2021

    • Author(s)
      Hideyuki Tamaki
    • Organizer
      2021 NeLLi-Symposium on New Lineages of Life
    • Related Report
      2021 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 未知の腸内微生物を”培養”して新たな生物機能を探る -腸内マイクロバイオーム制御の実現に向けて-2021

    • Author(s)
      玉木秀幸
    • Organizer
      第44回日本分子生物学会
    • Related Report
      2021 Annual Research Report
  • [Presentation] 培養アプローチで迫る未知・未培養微生物たちの実体2021

    • Author(s)
      中井亮佑、草田裕之、玉木秀幸
    • Organizer
      科研費・新学術領域 ポストコッホ生態 シンポジウム「もっと知りたい!ポストコッホ技術」
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 今こそ注目!すごい微生物たちの世界2021

    • Author(s)
      中井亮佑
    • Organizer
      Anti-disciplinary Science Group in Keio・The 59th Scienc-ome
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 植物マイクロバイオーム -マリモとコケ坊主の巨大化の謎解きから-2021

    • Author(s)
      中井亮佑
    • Organizer
      国立環境研究所 生物多様性資源保全研究推進室セミナー
    • Related Report
      2021 Annual Research Report
    • Invited
  • [Presentation] 南極で分離されたLegionella株の環境適応と進化2021

    • Author(s)
      島田翔、中井亮佑、青木弘太郎、工藤栄、伊村智、下枝宣史、大野義一郎、渡邉研太郎、宮崎泰成、石井良和、舘田一博
    • Organizer
      南極医学医療ワークショップ
    • Related Report
      2021 Annual Research Report
  • [Presentation] 南極バクテリアの生態学2021

    • Author(s)
      中井亮佑
    • Organizer
      慶應義塾大学 南極生態学 特別講義
    • Related Report
      2021 Annual Research Report
  • [Presentation] 深部地下圏でメトキシ芳香族化合物分解を担う新規共生細菌の発見及び生存戦略の解明2021

    • Author(s)
      坂本幸子、Nobu Masaru Konishi、眞弓大介、玉澤聡、中原望、草田裕之、米林英治、岩間弘樹、五十嵐雅之、若山樹、前田治男、坂田将、田村具博、野村暢彦、鎌形洋一、玉木秀幸
    • Organizer
      第15回日本ゲノム微生物学会年会
    • Related Report
      2020 Annual Research Report
  • [Presentation] 深部地下圏でメトキシ芳香族化合物分解を担う新規共生細菌の生存戦略2021

    • Author(s)
      坂本幸子、Nobu Masaru Konishi、眞弓大介、玉澤聡、中原望、草田裕之、米林英治、岩間弘樹、五十嵐雅之、若山樹、前田治男、坂田将、田村具博、野村暢彦、鎌形洋一、玉木秀幸
    • Organizer
      日本農芸化学会2021年度仙台大会
    • Related Report
      2020 Annual Research Report
  • [Presentation] とっても小さい放線菌等の実体と新機能2021

    • Author(s)
      中井亮佑
    • Organizer
      第67回日本放線菌学会学術講演会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 培養アプローチで迫る稀少微生物たちの実体2021

    • Author(s)
      中井亮佑、草田裕之、玉木秀幸
    • Organizer
      日本農芸化学会2021年度仙台大会
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 極地微生物ハンティングのこれまでとこれから2020

    • Author(s)
      中井亮佑
    • Organizer
      極限環境生物学会 第21回年会・シンポジウム
    • Related Report
      2020 Annual Research Report
    • Invited
  • [Presentation] 深部地下圏環境におけるメトキシ芳香族化合物(MACs)分解メタン生成共生系の発見2020

    • Author(s)
      坂本 幸子、延 優、眞弓 大介、玉澤 聡、五十嵐 雅之、若山 樹、前田 治男、坂田 将、鎌形 洋一、玉木 秀幸
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 深部地下圏環境におけるメトキシ芳香族化合物(MACs)分解メタン生成共生系の発見2020

    • Author(s)
      坂本 幸子、延 優、眞弓 大介、玉澤 聡、五十嵐 雅之、若山 樹、前田 治男、坂田 将、鎌形 洋一、玉木 秀幸
    • Organizer
      日本農芸化学会2020年度大会 優秀発表会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 胆汁酸分解と抗生物質耐性に関わる両機能性酵素によるプロバイオティクス2020

    • Author(s)
      草田 裕之、有田 正規、遠野 雅徳、玉木 秀幸
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Annual Research Report
  • [Presentation] 単離培養から紐解く稀少微生物たちの実態と多様性2020

    • Author(s)
      中井 亮佑、玉木 秀幸
    • Organizer
      日本農芸化学会2020年度大会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 稀少微生物たちの実態と新機能を探る2019

    • Author(s)
      中井 亮佑
    • Organizer
      第14回 札幌微生物勉強会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Presentation] 未知の微生物を”培養”して新たな生物機能を探る2019

    • Author(s)
      玉木 秀幸
    • Organizer
      BioJapan2019 バイオインダストリー大賞・奨励賞受賞講演会
    • Related Report
      2019 Annual Research Report
    • Invited
  • [Book] 遺伝学の百科事典 -継承と多様性の源-2022

    • Author(s)
      日本遺伝学会
    • Total Pages
      690
    • Publisher
      丸善出版
    • ISBN
      9784621306604
    • Related Report
      2021 Annual Research Report
  • [Remarks] 新学術領域研究「超地球生命体を解き明かすポストコッホ機能生態学」ウェブサイト

    • URL

      https://postkoch.jp/

    • Related Report
      2023 Annual Research Report 2022 Annual Research Report 2021 Annual Research Report 2020 Annual Research Report 2019 Annual Research Report
  • [Patent(Industrial Property Rights)] 耐熱性胆汁酸塩加水分解酵素および経口組成物2020

    • Inventor(s)
      草田裕之、玉木秀幸、有田正規
    • Industrial Property Rights Holder
      産業技術総合研究所、国立遺伝学研究所
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2020-143314
    • Filing Date
      2020
    • Related Report
      2020 Annual Research Report

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Published: 2019-07-04   Modified: 2025-01-30  

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