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Study on the regulatory mechanism of epigenome dynamics by histone modification erasers

Planned Research

Project AreaMechanisms underlying replication of non-genomic codes that mediate plasticity and robustness for cellular inheritance
Project/Area Number 19H05742
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionHokkaido University

Principal Investigator

MURAKAMI Yota  北海道大学, 理学研究院, 教授 (20260622)

Project Period (FY) 2019-06-28 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥80,080,000 (Direct Cost: ¥61,600,000、Indirect Cost: ¥18,480,000)
Fiscal Year 2023: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2022: ¥14,950,000 (Direct Cost: ¥11,500,000、Indirect Cost: ¥3,450,000)
Fiscal Year 2021: ¥13,130,000 (Direct Cost: ¥10,100,000、Indirect Cost: ¥3,030,000)
Fiscal Year 2020: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2019: ¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Keywordsヘテロクロマチン / 反復配列 / 分裂酵母 / RNAi / エピジェネティクス / クロマチン / 分裂公募 / イレーザー / Epe1 / JmjCタンパク質 / ヒストン修飾Eraser / エピゲノム維持 / eraser / Eraser / エピゲノム複製
Outline of Research at the Start

抑制的クロマチン構造複製・変動制御のマスターレギュレーターであるEpe1によるヘテロクロマチン複製・変動制御について以下の点を明らかにする。(1) Epe1によるRNAi活性化や異所的ヘテロクロマチン抑制の分子機構の解明、(2) 減数分裂特異的遺伝子上の一時的ヘテロクロマチンの複製維持機構、 (3) Eraserによるヘテロクロマチン複製・変動制御システムの哺乳類細胞での普遍性の検討。

Outline of Final Research Achievements

Eukaryotic DNA has a chromatin structure wrapped around histone proteins. Heterochromatin is defined by methylation of the 9th lysine of histone H3 (H3K9me) and suppresses gene expression, but it tends to form in DNA regions with repetitive sequences. However, the mechanism that connects repeat sequences and heterochromatin remains unclear. In this study, we reproduced this phenomenon in the model organism fission yeast and found that the Epe1 protein, which normally removes H3K9me, promotes H3K9me modification in repetitive DNA sequences via the RNAi mechanism. This proposes a new mechanism that connects heterochromatin and repetitive DNA sequences.

Academic Significance and Societal Importance of the Research Achievements

生物進化の過程でゲノムで繰り返し配列の増大がおこることが広く観察される。そして繰り返し配列は相同組み換えを介した遺伝子組換えの標的となりゲノム不安定性を招く。繰り返し配列上に形成されるヘテロクロマチンは遺伝子組換えを抑制し、ゲノム安定性に寄与すると考えられており、ヒトにおいてもその不具合によって発症する病気があることが知られている。しかし、反復配列上のヘテロクロマチン形成の分子機構は不明であった。したがって、本研究の成果は真核細胞のもつ根本的なゲノム安定性維持の仕組みの理解のみならず、今後ヒトにおける病気の治療法の探索にも有用であると考えられる。

Report

(6 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (14 results)

All 2024 2023 2022 2021 2019 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Open Access: 6 results) Presentation (3 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Remarks (2 results)

  • [Journal Article] A zinc‐finger protein Moc3 functions as a transcription activator to promote RNAi-dependent constitutive heterochromatin establishment in fission yeast2024

    • Author(s)
      Mori Miyuki、Sato Michiaki、Takahata Shinya、Kajitani Takuya、Murakami Yota
    • Journal Title

      Genes to Cells

      Volume: in press Issue: 6 Pages: 471-485

    • DOI

      10.1111/gtc.13116

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polymeric nature of tandemly repeated genes enhances assembly of constitutive heterochromatin in fission yeast2023

    • Author(s)
      Tetsuya Yamamoto, Takahiro Asanuma, and Yota Murakami
    • Journal Title

      Communications Biology

      Volume: 6 Issue: 1 Pages: 796-796

    • DOI

      10.1038/s42003-023-05154-w

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Opposing Roles of FACT for Euchromatin and Heterochromatin in Yeast2023

    • Author(s)
      Takahata Shinya、Murakami Yota
    • Journal Title

      Biomolecules

      Volume: 13 Issue: 2 Pages: 377-377

    • DOI

      10.3390/biom13020377

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Tandemly repeated genes promote RNAi-mediated heterochromatin formation via an antisilencing factor, Epe1, in fission yeast2022

    • Author(s)
      Asanuma T, Inagaki S, Kakutani T, Aburatani H, Murakami Y
    • Journal Title

      Genes & Development

      Volume: 36 Issue: 21-24 Pages: 1145-1159

    • DOI

      10.1101/gad.350129.122

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The chromatin remodeler RSC prevents ectopic CENP-A propagation into pericentromeric heterochromatin at the chromatin boundary2022

    • Author(s)
      Satoru Tsunemine , Hiromi Nakagawa , Yutaka Suzuki and Yota Murakami
    • Journal Title

      Nucleic Acids Research

      Volume: 50 Issue: 19 Pages: 10914-10928

    • DOI

      10.1093/nar/gkac827

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Histone variant H2A.Z plays multiple roles in the maintenance of heterochromatin integrity2022

    • Author(s)
      Kazuki Tsukii, Shinya Takahata, Yota Murakami
    • Journal Title

      Genes to Cells

      Volume: 27 Issue: 2 Pages: 93-112

    • DOI

      10.1111/gtc.12911

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Trimethylguanosine synthase 1 (Tgs1) is involved in Swi6/HP1‐independent siRNA production and establishment of heterochromatin in fission yeast2021

    • Author(s)
      Yu Hiroki、Tsuchida Mai、Ando Motoyoshi、Hashizaki Tomoka、Shimada Atsushi、Takahata Shinya、Murakami Yota
    • Journal Title

      Genes to Cells

      Volume: 26 Issue: 4 Pages: 203-218

    • DOI

      10.1111/gtc.12833

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe12019

    • Author(s)
      Sorida Masato、Hirauchi Takahiro、Ishizaki Hiroaki、Kaito Wataru、Shimada Atsushi、Mori Chie、Chikashige Yuji、Hiraoka Yasushi、Suzuki Yutaka、Ohkawa Yasuyuki、Kato Hiroaki、Takahata Shinya、Murakami Yota
    • Journal Title

      PLOS Genetics

      Volume: 15 Issue: 6 Pages: e1008129-e1008129

    • DOI

      10.1371/journal.pgen.1008129

    • NAID

      120007002166

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Unprogrammed epigenetic variation mediated by stochastic formation of ectopic heterochromatin2019

    • Author(s)
      Sorida Masato、Murakami Yota
    • Journal Title

      Current Genetics

      Volume: 66 Issue: 2 Pages: 319-325

    • DOI

      10.1007/s00294-019-01031-4

    • Related Report
      2019 Annual Research Report
    • Peer Reviewed
  • [Presentation] Tandemly repeated genes promote RNAi-mediated heterochromatin formation via an anti-silencing factor Epe12023

    • Author(s)
      Yota Murakami
    • Organizer
      The 11th international fission yeast meeting
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 標的遺伝子の密集がR N A i -ヘテロクロマチン形成を促進する2021

    • Author(s)
      浅沼 高寛、稲垣 宗一、角谷 徹仁、油谷 浩幸、村上 洋太
    • Organizer
      第39回染色体ワークショップ・第20回核ダイナミクス研究会
    • Related Report
      2021 Annual Research Report
  • [Presentation] RNA capのメチル化酵素Tgs1のRNAi依存ヘテロクロマチン形成での機能2021

    • Author(s)
      村上洋太
    • Organizer
      トランスポゾン研究会
    • Related Report
      2021 Annual Research Report
  • [Remarks] 繰り返し配列のDNAがヘテロクロマチン化される仕組みを解明

    • URL

      https://www.hokudai.ac.jp/news/pdf/230113_pr.pdf

    • Related Report
      2022 Annual Research Report
  • [Remarks] 遺伝情報継承に重要な染色体領域を維持する仕組みを解明

    • URL

      https://www.hokudai.ac.jp/news/2022/10/post-1108.html

    • Related Report
      2022 Annual Research Report

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Published: 2019-07-04   Modified: 2025-01-30  

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