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Reconstitution of totipotent nuclei in a test tube

Planned Research

Project AreaProgram of totipotency: From decoding to designing
Project/Area Number 19H05755
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Shintomi Keishi  国立研究開発法人理化学研究所, 開拓研究本部, 専任研究員 (60462694)

Project Period (FY) 2019-06-28 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥93,600,000 (Direct Cost: ¥72,000,000、Indirect Cost: ¥21,600,000)
Fiscal Year 2023: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2022: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2021: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2020: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2019: ¥26,520,000 (Direct Cost: ¥20,400,000、Indirect Cost: ¥6,120,000)
Keywords受精 / 核移植 / 染色体 / カエル卵抽出液 / 再構成 / 核の再プログラム化 / 細胞周期 / 再プログラム化 / 無細胞系 / 卵割周期 / 胚性遺伝子活性化
Outline of Research at the Start

受精卵では核の構造が大きく変化します。こうして核が再プログラム化されると、細胞があらゆる組織へと分化するポテンシャル「全能性」が得られます。これまで、私たちはカエル卵の抽出液を使って、核の再プログラム化を試験管内で再現する方法を開発し、そのしくみを分子レベルで理解する準備を整えてきました。この研究では、独自の方法を使って、卵に存在するどのタンパク質が、どのような化学反応を通じて、再プログラム化をもたらすのかを明らかにします。さらに、得られた知見をもとにして、さまざまな組織に由来する細胞の核を再プログラム化し、人為的に全能性を与えることにも挑戦します。

Outline of Final Research Achievements

In a fertilized egg of animals, the regulatory mode of the gamete genome is converted to an early embryo-specific one, thus allowing differentiation into various cells in the whole body. In this study, we have examined mechanistically how factors derived from egg cytoplasm promote nuclear reprogramming. Our attempt to modify cell-free assays of frog egg extracts revealed the role of proteins essential for zygotic genome activation and somatic cell nuclear transfer. We also established the protocols for in vitro reconstitution of these processes using purified factors. In sum, these results undoubtedly broaden our biochemical understanding of the process of totipotency acquisition.

Academic Significance and Societal Importance of the Research Achievements

近年のゲノム科学的手法の飛躍的な進展により、核の再プログラム化に伴うエピゲノム変化への理解は飛躍的に進んだ一方で、再プログラム化を実行する卵由来のタンパク質の同定やその機能解析は大きく遅れている。また、体細胞核移植によるクローン作出が実用化されているにもかかわらず、その成功率は依然として低いままである。本研究で得られた成果は、これらの未解決の課題に対して、生化学的視点から解答をもたらすものである。

Report

(6 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Annual Research Report
  • 2021 Annual Research Report
  • 2020 Annual Research Report
  • 2019 Annual Research Report
  • Research Products

    (25 results)

All 2024 2023 2022 2021 2020 Other

All Int'l Joint Research (4 results) Journal Article (9 results) (of which Int'l Joint Research: 4 results,  Peer Reviewed: 9 results,  Open Access: 8 results) Presentation (10 results) (of which Int'l Joint Research: 1 results,  Invited: 8 results) Remarks (2 results)

  • [Int'l Joint Research] UC Berkeley(米国)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] MRC London Institute of Medical Sciences(英国)

    • Related Report
      2023 Annual Research Report
  • [Int'l Joint Research] UC Berkeley(米国)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] MRC London Institute of Medical Sciences(英国)

    • Related Report
      2022 Annual Research Report
  • [Journal Article] Recombinant cyclin B-Cdk1-Suc1 capable of multi-site mitotic phosphorylation in vitro2024

    • Author(s)
      K. Shintomi, Y. Masahara-Negishi, Masami Shima, Shoji Tane, and T. Hirano
    • Journal Title

      PLoS One

      Volume: 19 Issue: 3 Pages: e0299003-e0299003

    • DOI

      10.1371/journal.pone.0299003

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Regulation of condensin II by self-suppression and release mechanisms2024

    • Author(s)
      Yoshida Makoto M.、Kinoshita Kazuhisa、Shintomi Keishi、Aizawa Yuuki、Hirano Tatsuya
    • Journal Title

      Molecular Biology of the Cell

      Volume: 35 Issue: 2

    • DOI

      10.1091/mbc.e23-10-0392

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Monitering the compaction of single DNA molecules in Xenopus egg extract in real time2023

    • Author(s)
      M. Sun, H. Amiri, A. B. Tong, K. Shintomi, T. Hirano, C. Bustamante, and R. Heald.
    • Journal Title

      Proc. Natl. Acad. Sci. USA.

      Volume: 120 Issue: 12

    • DOI

      10.1073/pnas.2221309120

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Cell cycle-specific loading of condensin I is regulated by the N-terminal tail of its kleisin subunit2022

    • Author(s)
      S. Tane, K. Shintomi, K. Kinoshita, Y. Tsubota, M. M. Yoshida, T. Nishiyama, and T. Hirano
    • Journal Title

      eLife

      Volume: 11 Pages: 1-23

    • DOI

      10.7554/elife.84694

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Solubilization of Mouse Sperm Chromatin for Sequencing Analyses Using a Chaperon Protein2022

    • Author(s)
      Yuko Fukuda, Keishi Shintomi, Kosuke Yamaguchi, Yasuhiro Fujiwara, Yuki Okada
    • Journal Title

      Methods in Molecular Biology

      Volume: 2577 Pages: 161-173

    • DOI

      10.1007/978-1-0716-2724-2_11

    • ISBN
      9781071627235, 9781071627242
    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Molecular dissection of condensin II-mediated chromosome assembly using in vitro assays2022

    • Author(s)
      M. M. Yoshida, K. Kinoshita, Y. Aizawa, S. Tane, D. Yamashita, K. Shintomi, and T. Hirano
    • Journal Title

      eLife

      Volume: 11

    • DOI

      10.7554/elife.78984

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Making Mitotic Chromosomes in a Test Tube2022

    • Author(s)
      Shintomi Keishi
    • Journal Title

      Epigenomes

      Volume: 6 Issue: 3 Pages: 20-20

    • DOI

      10.3390/epigenomes6030020

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A loop extrusion-independent mechanism contributes to condensin I-mediated chromosome shaping2022

    • Author(s)
      Kinoshita Kazuhisa、Tsubota Yuko、Tane Shoji、Aizawa Yuuki、Sakata Ryota、Takeuchi Kozo、Shintomi Keishi、Nishiyama Tomoko、Hirano Tatsuya
    • Journal Title

      Journal of Cell Biology

      Volume: 221 Issue: 3

    • DOI

      10.1083/jcb.202109016

    • Related Report
      2021 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Guiding functions of the C-terminal domain of topoisomerase IIα advance mitotic chromosome assembly2021

    • Author(s)
      Keishi Shintomi and Tatsuya Hirano
    • Journal Title

      Nature Communications

      Volume: - Issue: 1 Pages: 2917-2917

    • DOI

      10.1038/s41467-021-23205-w

    • Related Report
      2021 Annual Research Report 2020 Annual Research Report 2019 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] An unexpected role of nucleosomes in mitotic chromosome assembly2023

    • Author(s)
      Keishi Shintomi
    • Organizer
      第46回日本分子生物学会年会
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] 全能性獲得過程を試験管内で再現する2023

    • Author(s)
      新冨 圭史
    • Organizer
      新学術領域「全能性プログラム」公開シンポジウム
    • Related Report
      2023 Annual Research Report
  • [Presentation] 染色体をつくる:物理化学的特性の理解を目指して2022

    • Author(s)
      新冨圭史
    • Organizer
      第45回日本分子生物学会年
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Biochemical dissection of nuclear reprogramming on somatic cell nuclear transfer2022

    • Author(s)
      Keishi Shintomi
    • Organizer
      The International Symposium "Totipotency and Germ Cell Development"(
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] カエル卵を使って見えてきた染色体の構築メカニズム2022

    • Author(s)
      新冨圭史
    • Organizer
      第93回日本動物学会大会 サテライトシンポジウ
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] 細胞周期の再構成は可能か?2022

    • Author(s)
      新冨圭史
    • Organizer
      細胞分裂研究会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] カエル卵抽出液を使った体細胞核の再プログラム化2022

    • Author(s)
      新冨圭史
    • Organizer
      第74回日本細胞生物学会大会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] カエル卵抽出液をつかって染色体構築におけるヌクレオソームの役割に迫る2021

    • Author(s)
      新冨圭史
    • Organizer
      第44回日本分子生物学会年会
    • Related Report
      2021 Annual Research Report
  • [Presentation] Reprogramming somatic cell nuclei in Xenopus egg extracts2020

    • Author(s)
      Keishi Shintomi
    • Organizer
      第93回 日本生化学会大会
    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Invited
  • [Presentation] Topoisomerase IIa utilizes its C-terminal domain to work in crowded environments of mitotic chromosome assembly2020

    • Author(s)
      Keishi Shintomi and Tatsuya Hirano
    • Organizer
      第43回 日本分子生物学会年会
    • Related Report
      2020 Annual Research Report 2019 Annual Research Report
    • Invited
  • [Remarks] Research Map

    • URL

      https://researchmap.jp/k_shintomi/presentations/38977698

    • Related Report
      2022 Annual Research Report
  • [Remarks] 研究成果に関するプレスリリース

    • URL

      https://www.riken.jp/press/2021/20210518_4/index.html

    • Related Report
      2021 Annual Research Report

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Published: 2019-07-04   Modified: 2025-01-30  

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