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Understanding the "genome adaptation" in fertilized embryo

Planned Research

Project AreaSystematic study of chromosome adaptation
Project/Area Number 22125007
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

OKADA Yuki  東京大学, 分子細胞生物学研究所, 准教授 (60546430)

Co-Investigator(Renkei-kenkyūsha) SHIRAHIGE Katsuhiko  東京大学, 分子細胞生物学研究所, 教授 (90273854)
SHIRAHIGE Katsuhiko  東京工業大学, 大学院・生命理工学研究科, 教授 (90501106)
MAKINO Katsuhiko  東京大学, 分子細胞生物学研究所, 特任助教 (60431334)
PARK Sung-Joon  東京大学, 医科学研究所, 特任講師
Research Collaborator AOSHIMA Keisuke  
HADA Masashi  
Project Period (FY) 2010-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥77,870,000 (Direct Cost: ¥59,900,000、Indirect Cost: ¥17,970,000)
Fiscal Year 2014: ¥14,560,000 (Direct Cost: ¥11,200,000、Indirect Cost: ¥3,360,000)
Fiscal Year 2013: ¥15,210,000 (Direct Cost: ¥11,700,000、Indirect Cost: ¥3,510,000)
Fiscal Year 2012: ¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2011: ¥15,860,000 (Direct Cost: ¥12,200,000、Indirect Cost: ¥3,660,000)
Fiscal Year 2010: ¥16,250,000 (Direct Cost: ¥12,500,000、Indirect Cost: ¥3,750,000)
Keywords発生生物学 / ゲノム / エピゲノム / リモデリング / クロマチンダイナミクス / 初期胚発生 / ChIP-seq / 受精卵 / 転写 / リプログラミング / ゲノムアダプテーション / ストレス / 染色体構造 / 遺伝
Outline of Final Research Achievements

In this study, we aimed i) the establishment of ChIP-seq from very small number of cells, especially mouse preimplantation embyors, and ii) analysis of the (epi)genome reprogramming in fertilized 1-cell embryos using the new ChIP-seq technology.
In the former project, we obtained substantial improvement of reproducibility in top ~15% sequence reads by modifying the step of linear amplification of sequence libraries, although further modifications are still required to reach the goal. In the latter project, instead of using the new ChIP-seq method, we utilized recently identified histone mutants, which erase endogenous histone methylations at the mutated sites, to investigate the importance of histone methylations in preimplantation embryos. As a result, we identified that paternal-specific H3K4 monomethylation by Mll3/4 is required for transcription of paternal genome in late 1-cell embryos, likely through enhancer activation.

Report

(6 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (17 results)

All 2015 2014 2013 2012 2011 2010 Other

All Journal Article (8 results) (of which Peer Reviewed: 6 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (8 results) Remarks (1 results)

  • [Journal Article] Paternal H3K4 methylation is essential for minor zygotic gene activation and early embryonic development2015

    • Author(s)
      Keisuke Aoshima, Erina Inoue, Hirofumi Sawa, Yuki Okada
    • Journal Title

      EMBO reports

      Volume: -

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Generation of a dual-color reporter mouse line to monitor spermatogenesis in vivo2014

    • Author(s)
      Yoshinori Makino, Erina Inoue, Masashi Hada, Keisuke Aoshima, Satsuki Kitano, Hitoshi Miyachi and Yuki Okada
    • Journal Title

      Frontiers in cell and developmental biology

      Volume: 2 Pages: 1-9

    • DOI

      10.3389/fcell.2014.00030

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ヒストン制御とエピジェネティクス2014

    • Author(s)
      羽田政司、岡田由紀
    • Journal Title

      生体の科学

      Volume: 65

    • Related Report
      2014 Annual Research Report
  • [Journal Article] マウス受精卵前核期におけるクロマチンダイナミクス2013

    • Author(s)
      青島圭佑、岡田由紀
    • Journal Title

      生化学

      Volume: 85-4 Pages: 278-283

    • NAID

      10031169571

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of Alternative Culture Method for Spermatogonial Stem Cells Using Knockout Serum Replacement.2013

    • Author(s)
      Aoshima K, Baba A, Makino Y, Okada Y.
    • Journal Title

      PLoS One

      Volume: 8-10 Issue: 10 Pages: e77715-e77715

    • DOI

      10.1371/journal.pone.0077715

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] マウス受精卵前核期におけるクロマチンダイナミクス2013

    • Author(s)
      青島圭佑
    • Journal Title

      生化学

      Volume: 未定

    • NAID

      10031169571

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 精子形成のエピジェネティック制御機構2012

    • Author(s)
      牧野吉倫
    • Journal Title

      実験医学

      Volume: 30 Pages: 2916-2922

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
  • [Journal Article] Understanding paternal genome demethylation through live-cell imaging and siRNA2011

    • Author(s)
      Kazuo Yamagata, Yuki Okada
    • Journal Title

      Cellular and Molecular Life Sciences

      Volume: 68(10) Pages: 1669-79

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] マウス受精卵におけるクロマチンダイナミクスの解析2013

    • Author(s)
      青島圭佑
    • Organizer
      第155回日本獣医学会学術集会
    • Place of Presentation
      東京大学 駒場キャンパス
    • Year and Date
      2013-03-28
    • Related Report
      2012 Annual Research Report
  • [Presentation] マウス受精卵前核期におけるクロマチンダイナミクスの解析2013

    • Author(s)
      青島圭佑、岡田由紀
    • Organizer
      第36回分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Presentation] 精子残存ヒストンのプロファイリングと機能解析2012

    • Author(s)
      羽田政司
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
  • [Presentation] マウス前核期受精卵リプログラミングにおけるヒストン脱メチル化酵素Kdm6bの役割2012

    • Author(s)
      青島圭佑
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場
    • Year and Date
      2012-12-11
    • Related Report
      2012 Annual Research Report
  • [Presentation] 受精卵のゲノムアダプテーションの理解2012

    • Author(s)
      岡田由紀
    • Organizer
      新学術領域「ゲノムアダプテーションのシステム的理解」H24班会議
    • Place of Presentation
      東京大学 山上会館
    • Year and Date
      2012-07-04
    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
  • [Presentation] マウス前核期受精卵リプログラミングにおけるヒストン脱メチル化酵素 Kdm6b の役割2012

    • Author(s)
      青島圭佑
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2011 Annual Research Report
  • [Presentation] Investigation of the role of H3K79 Methylation in Spermatogonial Stem Cells2011

    • Author(s)
      岡田由紀
    • Organizer
      CDB symposium 2011
    • Place of Presentation
      神戸
    • Related Report
      2010 Annual Research Report
  • [Presentation] DOT1L/KMT4, an H3K79 methyltransferase, is required for the mainte nance of spermatogonial stem cells2010

    • Author(s)
      岡田由紀
    • Organizer
      第34回分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.cp.kyoto-u.ac.jp/DirectoryJ.html

    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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