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Logic for the establishment and maintenance of macro-level robust gene expression in organs

Planned Research

Project AreaFrom molecules, cells to organs : trans-hierarchical logic for higher-order pattern and structures
Project/Area Number 22127002
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionThe University of Tokyo

Principal Investigator

TAKEDA Hiroyuki  東京大学, 理学(系)研究科(研究院), 教授 (80179647)

Project Period (FY) 2010-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥148,850,000 (Direct Cost: ¥114,500,000、Indirect Cost: ¥34,350,000)
Fiscal Year 2014: ¥27,170,000 (Direct Cost: ¥20,900,000、Indirect Cost: ¥6,270,000)
Fiscal Year 2013: ¥28,600,000 (Direct Cost: ¥22,000,000、Indirect Cost: ¥6,600,000)
Fiscal Year 2012: ¥30,030,000 (Direct Cost: ¥23,100,000、Indirect Cost: ¥6,930,000)
Fiscal Year 2011: ¥27,300,000 (Direct Cost: ¥21,000,000、Indirect Cost: ¥6,300,000)
Fiscal Year 2010: ¥35,750,000 (Direct Cost: ¥27,500,000、Indirect Cost: ¥8,250,000)
Keywords器官形成 / メダカ / 体軸形成 / 転写因子 / 境界形成 / *器官形成
Outline of Final Research Achievements

Compartment-based modularity is one of the important features in the development of multi-cellular organisms. We examined the mechanisms underlying the establishment and maintenance of the dorsal compartment in the somite, characterized by the expression of zic1/zic4 genes in the trunk region of medaka fish. We demonstrated that the dorsoventral boundary of this compartment is established by a special group of cells, called “boundary cells”. They are born in the region near the notochord and migrate out to the presumptive boundary. We also found that boundary cells finally differentiate into the horizontal myoceptum which mechanically dives the dorsal and ventral compartment of the somite. At later stages, the horizontal myoceptum could play an essential role in the maintenance of the compartment bourdary.

Report

(6 results)
  • 2015 Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (30 results)

All 2016 2015 2014 2013 2012 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Open Access: 6 results,  Acknowledgement Compliant: 3 results) Presentation (16 results) (of which Int'l Joint Research: 4 results,  Invited: 6 results) Remarks (5 results)

  • [Journal Article] Development of the pancreas in medaka, Oryzias latipes, from embryo to adult2015

    • Author(s)
      Takayoshi Otsuka, Tatsuya Tsukahara & Takeda, H.
    • Journal Title

      Development, Growth&Differentiation

      Volume: 57 Issue: 8 Pages: 557-569

    • DOI

      10.1111/dgd.12237

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] The medaka dhc2 mutant reveals conserved and distinct mechanisms of Hedgehog signaling in teleosts.2015

    • Author(s)
      Yamamoto, T., Tsukahara, T., Ishiguro, T., Hagiwara, H., Taira, M. & Takeda, H.
    • Journal Title

      BMC Developmental Biology

      Volume: 15 Issue: 1 Pages: 9-9

    • DOI

      10.1186/s12861-015-0057-x

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Unexpected link between polyketide synthase and calcium carbonate biomineralization2015

    • Author(s)
      Motoki Hojo, Ai Omi, Gen Hamanaka, Kazutoshi Shindo, Atsuko Shimada, Mariko Kondo, Takanori Narita, Masato Kiyomoto, Yohei Katsuyama, Yasuo Ohnishi, Naoki Irie and Hiroyuki Takeda
    • Journal Title

      Zoological Letters

      Volume: 1 Issue: 1 Pages: 1-16

    • DOI

      10.1186/s40851-014-0001-0

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The establishment of rotational polarity in the airway and ependymal cilia: analysis with a novel cilium motility mutant mouse2013

    • Author(s)
      Matsuo, M., Shimada, A., Koshida, S., Saga, Y. & Takeda, H.
    • Journal Title

      Am J Physiol Lung Cell Mol Physiol

      Volume: 304 Issue: 11 Pages: L736-L745

    • DOI

      10.1152/ajplung.00425.2012

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Trunk exoskeleton in teleosts is mesodermal in origin.2013

    • Author(s)
      Atsuko Shimada
    • Journal Title

      Nature Communications

      Volume: 4 Issue: 1 Pages: 1-8

    • DOI

      10.1038/ncomms2643

    • Related Report
      2013 Annual Research Report 2012 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Modular development of the teleost trunk along the dorsoventral axis and zic1/zic4 as selector genes in the dorsal module.2013

    • Author(s)
      Toru Kawanishi
    • Journal Title

      Development

      Volume: 140 Issue: 7 Pages: 1486-1496

    • DOI

      10.1242/dev.088567

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The medaka zic1/zic4 mutant provides molecular insights into teleost caudal fin evolution.2012

    • Author(s)
      Yuuta Moriyama
    • Journal Title

      Current Biology

      Volume: 21 Issue: 7 Pages: 601-607

    • DOI

      10.1016/j.cub.2012.01.063

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Pkd1l1 complexes withPkd2 on motile cilia and functions toestablish the left-right axis2011

    • Author(s)
      Kamura, K., Kobayashi, D., Uehara, Y., Koshida, S., et al
    • Journal Title

      Development

      Volume: 138 Issue: 6 Pages: 1121-9

    • DOI

      10.1242/dev.058271

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The medaka zic1/zic4 mutant provides molecular insights into teleost caudal fin evolution2011

    • Author(s)
      Yuuta Moriyama
    • Journal Title

      Current Biology

      Volume: 22 Pages: 601-607

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Deciphering the genetic code for the vertebrate pluripotent epigenome‐Insights from the medaka genome2016

    • Author(s)
      Hiroyuki Takeda
    • Organizer
      3rd Medaka Strategic Meeting and 17th Australia & New Zealand Zebrafish Metting
    • Place of Presentation
      メルボルン(オーストラリア)
    • Year and Date
      2016-02-03
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Sequence-based logic for the vertebrate pluripotent epigenome2015

    • Author(s)
      Hiroyuki Takeda
    • Organizer
      4th International Symposium of the mathematics on Chromatin Live dynamics
    • Place of Presentation
      JMSアステールプラザ(広島県広島市)
    • Year and Date
      2015-12-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Genomics and epigenomics in fish genomes2015

    • Author(s)
      Hiroyuki Takeda
    • Organizer
      The 7th Internatinal Symposium of Integrative
    • Place of Presentation
      蘭州(中国)
    • Year and Date
      2015-08-25
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Prepatterning of Developmental Gene Expression in Vertebrates - interplay between genetic and epigenetic mechanisms2015

    • Author(s)
      Hiroyuki Takeda
    • Organizer
      UT- NTU Joint Symposium- Frontier of Biological Sciences
    • Place of Presentation
      台北(台湾)
    • Year and Date
      2015-03-09
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Prepatterning of Developmental Gene Expression in Vertebrates ‐ interplay between genetic and epigenetic mechanisms2015

    • Author(s)
      武田洋幸
    • Organizer
      UT ‐ NTU Joint Symposium ‐ Frontier of Biological Sciences
    • Place of Presentation
      台北(台湾)
    • Year and Date
      2015-03-09
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Logic of the epigenetic code in the vertebrate genome2015

    • Author(s)
      Hiroyuki Takeda
    • Organizer
      Finnish-Japanese joint symposium on Morphogenesis and Signaling
    • Place of Presentation
      ヘルシンキ(フィンランド)
    • Year and Date
      2015-03-04
    • Related Report
      2014 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Establishment of robust compartments in fish somites along the dorsoventral axis2014

    • Author(s)
      武田洋幸
    • Organizer
      FORCE IN DEVELOPMENT
    • Place of Presentation
      岡崎カンファレンスセンター(愛知県岡崎市)
    • Year and Date
      2014-11-18
    • Related Report
      2013 Annual Research Report
  • [Presentation] 魚類におけるヘッジホッグシグナル伝達経路の繊毛依存性2013

    • Author(s)
      山元孝佳
    • Organizer
      第46回日本発生生物学会
    • Place of Presentation
      くにびきメッセ(島根県松江市)
    • Year and Date
      2013-05-30
    • Related Report
      2013 Annual Research Report
  • [Presentation] メダカ体節細胞集団におけるzic1の領域的な発現の形成・維持機構2012

    • Author(s)
      西川穂高、兼子拓也、河西通、塚原達也、島田敦子、武田洋幸
    • Organizer
      日本動物学会第83回大会
    • Place of Presentation
      大阪大学豊中キャンパス
    • Related Report
      2012 Annual Research Report
  • [Presentation] Mechanism for the maintenance of the regional expression of zic1 in medaka somites2012

    • Author(s)
      Nishikawa, H., Kaneko, T., Kawanishi, T., Shimada, A., Takeda, H.
    • Organizer
      第18回小型魚類研究会
    • Place of Presentation
      京都大学芝蘭会館
    • Related Report
      2012 Annual Research Report
  • [Presentation] Antagonistic relationship between histone and DNA methylation in long-term regulation of zic1/zic4, key regulators of vertebrate body patterning2012

    • Author(s)
      Nakamura, R., Tsukahara, T., Takeda, H.
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      マリンメッセ福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Novel Developmental and evolutionary insights from a peculiar medaka mutant, Da2012

    • Author(s)
      Takeda, H.
    • Organizer
      The inaugural E.S.Morse lecturer to the Functional Morphology and Ecology of Marine Fishes course at Friday Harbor Laboratories
    • Place of Presentation
      米国
    • Related Report
      2012 Annual Research Report
  • [Presentation] 発生後期におけるzic1/zic4を介した背腹パターン決定機構2011

    • Author(s)
      島田敦子
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都府)(招待講演)
    • Year and Date
      2011-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Epigenetic Regulation of Key Developmental Genes in the Medaka Fish

    • Author(s)
      Takeda, H.
    • Organizer
      Distinguished BCH Seminar, the Department of Biology & Chemistry
    • Place of Presentation
      中国
    • Related Report
      2012 Annual Research Report
  • [Presentation] Casting Genetic Light on Morphological Diversity in the Fish Body Shape

    • Author(s)
      Takeda, H.
    • Organizer
      22nd Pacific Science Congress
    • Place of Presentation
      Kuala Lumpur, Malaysia
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] 発生後期におけるzic1/zic4を介した背腹パターン決定機構

    • Author(s)
      島田敦子
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      国立京都国際会館(京都市)
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Remarks] 東京大学大学院理学系研究科動物発生学研究室

    • URL

      http://www.biol.s.u-tokyo.ac.jp/users/hassei/

    • Related Report
      2014 Annual Research Report
  • [Remarks] ミクロからマクロへ階層を超える秩序形成のロジック

    • URL

      http://www.morphologic.jp/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 動物発生学研究室

    • URL

      http://www.biol.s.u-tokyo.ac.jp/users/hassei/

    • Related Report
      2012 Annual Research Report
  • [Remarks] 東京大学大学院理学系研究科・動物発生学研究室

    • URL

      http://www.biol.s.u-tokyo.ac.jp/users/hassei/index.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.biol.s.u-tokyo.ac.jp/users/hassei/index.html

    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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