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Exploration of disease-related genes based on personal genome analysis and elucidation of pathogenesis in ALS

Planned Research

Project AreaPersonal genome-based initiatives toward understanding bran diseases
Project/Area Number 22129005
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionYokohama City University (2011-2014)
Nagoya University (2010)

Principal Investigator

TANAKA Fumiaki  横浜市立大学, 医学(系)研究科(研究院), 教授 (30378012)

Co-Investigator(Kenkyū-buntansha) DOI Hiroshi  横浜市立大学, 医学部, 講師 (10326035)
ATSUTA Naoki  名古屋大学, 医学部附属病院, 講師 (90547457)
Co-Investigator(Renkei-kenkyūsha) SOBUE Gen  名古屋大学, 医学系研究科, 教授 (20148315)
Project Period (FY) 2010-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥51,740,000 (Direct Cost: ¥39,800,000、Indirect Cost: ¥11,940,000)
Fiscal Year 2014: ¥9,620,000 (Direct Cost: ¥7,400,000、Indirect Cost: ¥2,220,000)
Fiscal Year 2013: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Fiscal Year 2012: ¥10,660,000 (Direct Cost: ¥8,200,000、Indirect Cost: ¥2,460,000)
Fiscal Year 2011: ¥10,530,000 (Direct Cost: ¥8,100,000、Indirect Cost: ¥2,430,000)
Fiscal Year 2010: ¥10,790,000 (Direct Cost: ¥8,300,000、Indirect Cost: ¥2,490,000)
KeywordsALS / 次世代シーケンサー / エクソーム解析 / 遺伝子診断 / 病因遺伝子 / 家族性ALS
Outline of Final Research Achievements

We developed a comprehensive genetic diagnostic system of the familial ALS including 28 genes related to familial ALS and 469 sporadic ALS samples were analyzed. We identified known mutations in 14 samples and 115 novel polymorphisms or mutations. Among these, 35 mutations in 30 cases were suspected to be disease-causing. We performed exome sequencing of 800 samples including sporadic ALS and control cases and data analysis is ongoing. In addition, we identified at least 2 SNPs related to rapid progression of sporadic ALS by combinational analysis of genetic information and prospective clinical data of Japanese Consortium for Amyotrophic Lateral Sclerosis Research (JaCALS).

Report

(6 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (25 results)

All 2015 2014 2013 2012 2011 2010 Other

All Journal Article (13 results) (of which Peer Reviewed: 9 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (12 results)

  • [Journal Article] A Japanese case of cerebellar ataxia, spastic paraparesis and deep sensory impairment associated with a novel homozygous TTC19 mutation2015

    • Author(s)
      Kunii M, Doi H, Higashiyama Y, Kugimoto C, Ueda N, Hirata J, Tomita-Katsumoto A, Kashikura-Kojima M, Kubota S, Taniguchi M, Murayama K, Nakashima M, Tsurusaki Y, Miyake N, Saitsu H, Matsumoto N, Tanaka F.
    • Journal Title

      J Hum Genet

      Volume: 60 Issue: 4 Pages: 187-191

    • DOI

      10.1038/jhg.2015.7

    • NAID

      40020433141

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Late-onset spastic ataxia phenotype in a patient with a homozygous DDHD2 mutation2014

    • Author(s)
      Doi H, Ushiyama M, Baba T, Tani K, Shiina M, Ogata K, Miyatake S, Yuzawa YF, Tsuji S, Nakashima M, Tsurusaki Y, Miyake N, Saitsu H, Ikeda S, Tanaka F, Matsumoto N, Yoshida K
    • Journal Title

      Sci Rep

      Volume: 4 Issue: 1 Pages: 7132-7132

    • DOI

      10.1038/srep07132

    • NAID

      120007100602

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Early onset epileptic encephalopathy caused by de novo SCN8A mutations2014

    • Author(s)
      Ohba C, Kato M, Takahashi S, Lerman-Sagie T, Lev D, Terashima H, Kubota M, Kawawaki H, Matsufuji M, Kojima Y, Tateno A, Goldberg-Stern H, Straussberg R, Marom D, Leshinsky-Silver E, Nakashima M, Nishiyama K, Tsurusaki Y, Miyake N, Tanaka F, Matsumoto N, Saitsu H:
    • Journal Title

      Epilepsia

      Volume: 55 Issue: 7 Pages: 994-1000

    • DOI

      10.1111/epi.12668

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Neck weakness is a potent prognostic factor in sporadic amyotrophic lateral sclerosis patients.2013

    • Author(s)
      Nakamura R, Atsuta N, Watanabe H, Hirakawa A, Watanabe H, Ito M, Senda J, Katsuno M, Tanaka F, Izumi Y, Morita M, Ogaki K, Taniguchi A, Aiba I, Mizoguchi K, Okamoto K, Hasegawa K, Aoki M, Kawata A, Abe K, Oda M, Konagaya M, Imai T, Nakagawa M, Tsuji S, Kaji R, Nakano I, Sobue G.
    • Journal Title

      J Neurol Neurosurg Psychiatry

      Volume: 84 Issue: 12 Pages: 1365-1371

    • DOI

      10.1136/jnnp-2013-306020

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Spliceosome integrity is defective in the motor neuron diseases ALS and SMA2013

    • Author(s)
      Tsuiji H, Iguchi Y, Furuya A, Kataoka A, Hatsuta H, Atsuta N, Tanaka F, Hashizume Y, Akatsu H, Murayama S, Sobue G, Yamanaka K
    • Journal Title

      EMBO Mol Med

      Volume: 5 Issue: 2 Pages: 221-234

    • DOI

      10.1002/emmm.201202303

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A novel SCARB2 mutation causing late-onset progressive myoclonus epilepsy2013

    • Author(s)
      Higashiyama Y, Doi H, Wakabayashi M, Tsurusaki Y, Miyake N, Saitsu H, Ohba C, Fukai R, Miyatake S, Joki H, Koyano S, Suzuki Y, Tanaka F, Kuroiwa Y, Matsumoto N
    • Journal Title

      Mov Disord

      Volume: 28 Issue: 4 Pages: 552-553

    • DOI

      10.1002/mds.25296

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ALSのパーソナルゲノム解析2013

    • Author(s)
      田中章景,曽根 淳,熱田直樹,中村亮一,土井 宏,児矢野 繁,祖父江 元
    • Journal Title

      Brain and Nerve

      Volume: 65 Pages: 257-265

    • Related Report
      2013 Annual Research Report
  • [Journal Article] 次世代シーケンサーによる神経変性疾患の解析と展望 ALSのパーソナルゲノム解析2013

    • Author(s)
      田中章景
    • Journal Title

      BRAIN and NERVE

      Volume: 65 Pages: 19-30

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Corticobasal Syndrome CBSと関連する遺伝子変異2013

    • Author(s)
      土井宏
    • Journal Title

      BRAIN and NERVE

      Volume: 65 Pages: 19-30

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Neuropathology and omics in motor neuron diseases2012

    • Author(s)
      Tanaka F
    • Journal Title

      Neuropathology

      Volume: 32 Issue: 4 Pages: 458-462

    • DOI

      10.1111/j.1440-1789.2011.01281.x

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 神経疾患治療の進歩2011年 運動ニューロン疾患の治療の進歩2012

    • Author(s)
      田中章景
    • Journal Title

      神経治療学

      Volume: 29 Pages: 401-403

    • Related Report
      2012 Annual Research Report
  • [Journal Article] A functional variant in ZNF512B is associated with susceptibility to amyotrophic lateral sclerosis in Japanese.2011

    • Author(s)
      Iida A
    • Journal Title

      Hum Mol Genet

      Volume: 20 Issue: 18 Pages: 3684-3692

    • DOI

      10.1093/hmg/ddr268

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A functional variant in ZNF512B is associated with susceptibility to a myotrophic lateral sclerosis in Japanese2011

    • Author(s)
      Iida A, et al
    • Journal Title

      Hum Mol Genet

      Volume: 20 Pages: 3684-3692

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Analysis of major amyotrophic lateral sclerosis genes in Japan2014

    • Author(s)
      Nakamura R, Sone J, Atsuta N, Watanabe H, Hirakawa A, Watanabe H, Ito M, Senda J, Katsuno K, Tanaka F, Izumi Y, Morita M, Ogaki K, Taniguchi A, Aiba A, Mizoguchi K, Okamoto K, Hasegawa K, Aoki M, Kawata A, Abe K, Oda M, Konagaya M, Imai T, Nakagawa M, Tsuji S, Kaji R, Nakano I, Sobue G
    • Organizer
      64th Annual Meeting of the American Society of Human Genetics
    • Place of Presentation
      San Diego Convention Center, San Diego, CA, USA
    • Year and Date
      2014-10-18 – 2014-10-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] SCARB2遺伝子に変異を認めた高齢発症の進行性ミオクローヌスてんかん兄妹例2013

    • Author(s)
      東山雄一,土井宏,阿部弘基,中村治子,工藤洋祐,上木英人,児矢野 繁,鈴木ゆめ,黒岩義之,松本直通,田中章景
    • Organizer
      第54回日本神経学会学術大会
    • Place of Presentation
      東京国際フォーラム(東京都千代田)
    • Year and Date
      2013-05-29 – 2013-06-01
    • Related Report
      2013 Annual Research Report
  • [Presentation] 運動ニューロン特異的TDP-43ノックアウトマウスの病理学的検討2013

    • Author(s)
      井口洋平, 勝野雅央, 丹羽淳一, 高木伸之介, 山中宏二, 三澤日出巳, 高橋良 輔, 佐々木彰一, 田中章景, 祖父江元
    • Organizer
      第54回日本神経学会学術大会
    • Place of Presentation
      東京国際フォーラム(東京都千代田)
    • Year and Date
      2013-05-29 – 2013-06-01
    • Related Report
      2013 Annual Research Report
  • [Presentation] ALS疾患関連遺伝子の探索2013

    • Author(s)
      田中章景
    • Organizer
      新学術領域研究 脳疾患ゲノム情報班会議
    • Place of Presentation
      東京大学小柴ホール(東京都)
    • Year and Date
      2013-02-09
    • Related Report
      2012 Annual Research Report
  • [Presentation] 孤発性および家族性ALS疾患関連遺伝子の探索2012

    • Author(s)
      田中章景
    • Organizer
      新学術領域研究 脳疾患ゲノム情報班会議
    • Place of Presentation
      東京大学小柴ホール(東京都)
    • Year and Date
      2012-09-01
    • Related Report
      2012 Annual Research Report
  • [Presentation] 家族性および孤発性ALS関連遺伝子の探索2012

    • Author(s)
      中村亮一, ら
    • Organizer
      パーソナルゲノム情報に基づく脳疾患メカニズムの解明班班会議
    • Place of Presentation
      東京大学本郷キャンパス理学部1号館小柴ホール(東京)
    • Year and Date
      2012-02-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] パーソナルゲノム解析に基づくALSの疾患関連遺伝子探索と病態解明2011

    • Author(s)
      田中章景, ら
    • Organizer
      パーソナルゲノム情報に基づく脳疾患メカニズムの解明班班会議
    • Place of Presentation
      東京大学本郷キャンパス理学部1号館小柴ホール(東京)
    • Year and Date
      2011-09-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] パーソナルゲノム解析に基づくALSの疾患関連遺伝子探索と病態解明2010

    • Author(s)
      田中章景, ら
    • Organizer
      パーソナルゲノム情報に基づく脳疾患メカニズムの解明班班会議
    • Place of Presentation
      学術総合センター(東京)
    • Year and Date
      2010-12-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] パーソナルゲノム解析に基づくALSの疾患関連遺伝子探索と病態解明2010

    • Author(s)
      田中章景, ら
    • Organizer
      パーソナルゲノム情報に基づく脳疾患メカニズムの解明班班会議
    • Place of Presentation
      神戸ポートピアホテル(神戸)
    • Year and Date
      2010-08-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] JaCALS (Japanese Consortium for Amyotrophic Lateral Sclerosis research)について2010

    • Author(s)
      熱田直樹, ら
    • Organizer
      パーソナルゲノム情報に基づく脳疾患メカニズムの解明班班会議
    • Place of Presentation
      神戸ポートピアホテル(神戸)
    • Year and Date
      2010-08-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] パーソナルゲノム解析に基づくALSの疾患関連遺伝子探索と病態解明

    • Author(s)
      田中章景
    • Organizer
      新学術領域研究 脳疾患ゲノム情報班会議
    • Place of Presentation
      東京大学小柴ホール(東京都)
    • Related Report
      2011 Annual Research Report
  • [Presentation] 家族性および孤発性ALS関連遺伝子の探索

    • Author(s)
      中村亮一
    • Organizer
      新学術領域研究 脳疾患ゲノム情報班会議
    • Place of Presentation
      東京大学小柴ホール(東京都)
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2018-03-28  

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