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Epigenetic variation in HLA genome

Planned Research

Project AreaHLA polymorphism, disease and evolution
Project/Area Number 22133003
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKurume University (2014)
Kyushu University (2010-2013)

Principal Investigator

YAMAMOTO Ken  久留米大学, 医学部, 教授 (60274528)

Project Period (FY) 2010-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥62,140,000 (Direct Cost: ¥47,800,000、Indirect Cost: ¥14,340,000)
Fiscal Year 2014: ¥11,570,000 (Direct Cost: ¥8,900,000、Indirect Cost: ¥2,670,000)
Fiscal Year 2013: ¥12,220,000 (Direct Cost: ¥9,400,000、Indirect Cost: ¥2,820,000)
Fiscal Year 2012: ¥12,740,000 (Direct Cost: ¥9,800,000、Indirect Cost: ¥2,940,000)
Fiscal Year 2011: ¥12,610,000 (Direct Cost: ¥9,700,000、Indirect Cost: ¥2,910,000)
Fiscal Year 2010: ¥13,000,000 (Direct Cost: ¥10,000,000、Indirect Cost: ¥3,000,000)
KeywordsHLA / epigenome / DNA methylation / SNP / disease / DNAメチル化 / エピゲノム / ゲノム / 遺伝的多様性 / 非コードRNA / ヒストン / ゲノム多様性 / 遺伝子発現
Outline of Final Research Achievements

We investigated a role of epigenetic variation in HLA genomic region for better understanding of the pathogenesis of HLA-associated diseases. Through the association analysis between HLA alleles in HLA-A, -B, -C, -DRB1, -DQB1 and -DPB1 loci and DNA methylation levels of CpG sites located in 3.8 Mb of HLA region, we identified correlation of DPB1*05:01 or Cw*07:02 to the methylation levels of the sites around DPA1 and DPB1 promoter region or around Cw locus, respectively. In addition, the expression level of DPB1*05:01 was associated with the methylation levels. These results suggest that particular HLA alleles posses their own epigenetic status in HLA region.

Report

(6 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (16 results)

All 2015 2014 2013 2012 2011 2010 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results,  Acknowledgement Compliant: 1 results) Presentation (3 results) Remarks (3 results)

  • [Journal Article] Identification of a Hashimoto thyroiditis susceptibility locus via a genome-wide comparison with Graves' disease.2015

    • Author(s)
      Oryoji D, Ueda S, Yamamoto K, Yoshimura Noh J, Okamura K, Noda M, Watanabe N, Yoshihara A, Ito K, Sasazuki T.
    • Journal Title

      J Clin Endocrinol Metab.

      Volume: 100 Issue: 2 Pages: E319-E324

    • DOI

      10.1210/jc.2014-3431

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Identification of independent susceptible and protective HLA alleles in Japanese autoimmune thyroid disease and their epistasis.2014

    • Author(s)
      Ueda S, Oryoji D, Yamamoto K, Noh JY, Okamura K, Noda M, Kashiwase K, Kosuga Y, Sekiya K, Inoue K, Yamada H, Oyamada A, Nishimura Y, Yoshikai Y, Ito K, Sasazuki T.
    • Journal Title

      J Clin Endocrinol Metab.

      Volume: 99 Issue: 2 Pages: E379-E383

    • DOI

      10.1210/jc.2013-2841

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of a KEAP1 germline mutation in a family with multinodular goitre.2013

    • Author(s)
      Teshiba R et al.
    • Journal Title

      PLoS One

      Volume: 8 Issue: 5 Pages: 1-8

    • DOI

      10.1371/journal.pone.0065141

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] HLA and SNP haplotype mapping in the Japanese population.2012

    • Author(s)
      Kitajima H
    • Journal Title

      Genes Immun.

      Volume: 13 Issue: 7 Pages: 543-548

    • DOI

      10.1038/gene.2012.35

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide association study of coronary artery disease in the Japanese2012

    • Author(s)
      Fumihiko Takeuchi, Mitsuhiro Yokota, et al.(他23名、3番目)
    • Journal Title

      Eur J Hum Genet

      Volume: 20 Issue: 3 Pages: 333-340

    • DOI

      10.1038/ejhg.2011.184

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of independent risk loci for Graves' disease within the MHC in the Japanese population.2011

    • Author(s)
      Nakabayashi K, Shirasawa S
    • Journal Title

      J Hum Genet

      Volume: 56(11) Issue: 11 Pages: 772-778

    • DOI

      10.1038/jhg.2011.99

    • NAID

      10030661591

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in East Asians2011

    • Author(s)
      Yamori Y
    • Journal Title

      Nat Genetics

      Volume: 43 Issue: 6 Pages: 531-538

    • DOI

      10.1038/ng.834

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of TCTE3 as a gene responsible for congenital diaphragmatic hernia using a high-resolution single-nucleotide polymorphism array.2011

    • Author(s)
      Teshiba R, et al.
    • Journal Title

      Pediatr Surg Int.

      Volume: 27 Pages: 193-198

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A definitive haplotype map as determined by genotyping duplicated haploid genomes finds a predominant haplotype preference at copy number variation events.2010

    • Author(s)
      Kukita Y, et al.
    • Journal Title

      Am.J.Hum.Genet.

      Volume: 86 Pages: 918-928

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Subtypes of familial hemophagocytic lymphohistiocytosis in Japan based on genetic and functional analyses of cytotoxic T lymphocytes2010

    • Author(s)
      Nagai K, et al.
    • Journal Title

      PLoS One

      Volume: 5

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Smoking causes epigenetic change in humans.2014

    • Author(s)
      Isomoto A, Kitajima H, Ichihara S, Nakatochi M, Matsubara T, Yokota M, Takayanagi R, Yamamoto K.
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2014-12-25 – 2014-12-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] The study of tissue specific age-related DNA methylation change in mouse.2014

    • Author(s)
      Iwaya C, Kitajima H, Shibata H, Sonoda N, Inoguchi T, Yamamoto K.
    • Organizer
      The 24th Hot Spring Harbor International Symposium
    • Place of Presentation
      Kyushu Univeristy, Fukuoka, Japan
    • Year and Date
      2014-11-07 – 2014-11-08
    • Related Report
      2014 Annual Research Report
  • [Presentation] Epistatic interaction between protective HLA alleles and susceptible HLA-DP allele in autoimmune thyroid disease.2012

    • Author(s)
      Sasazuki T
    • Organizer
      16th International HLA and Immunogenetics Workshop and Conference
    • Place of Presentation
      Liverpool, England
    • Year and Date
      2012-05-28
    • Related Report
      2012 Annual Research Report
  • [Remarks] 久留米大学医学部医化学講座

    • URL

      http://www002.upp.so-net.ne.jp/kyama-Q/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 九州大学 山本健 研究活動

    • URL

      http://www002.upp.so-net.ne.jp/kyama-Q/

    • Related Report
      2013 Annual Research Report
  • [Remarks]

    • URL

      http://www.gen.kyushu-u.ac.jp/~genome/index.html

    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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