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Mechanisms of hybridization barriers in rice endosperm

Planned Research

Project AreaCorrelative gene system: establishing next-generation genetics
Project/Area Number 23113003
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionYokohama City University (2014-2016)
Nagahama Institute of Bio-Science and Technology (2012-2013)
Nara Institute of Science and Technology (2011)

Principal Investigator

Kinoshita tetsu  横浜市立大学, 木原生物学研究所, 教授 (60342630)

Co-Investigator(Kenkyū-buntansha) 河邊 昭  京都産業大学, 公私立大学の部局等, 准教授 (10582405)
Project Period (FY) 2011-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥138,450,000 (Direct Cost: ¥106,500,000、Indirect Cost: ¥31,950,000)
Fiscal Year 2015: ¥24,050,000 (Direct Cost: ¥18,500,000、Indirect Cost: ¥5,550,000)
Fiscal Year 2014: ¥24,050,000 (Direct Cost: ¥18,500,000、Indirect Cost: ¥5,550,000)
Fiscal Year 2013: ¥25,610,000 (Direct Cost: ¥19,700,000、Indirect Cost: ¥5,910,000)
Fiscal Year 2012: ¥23,400,000 (Direct Cost: ¥18,000,000、Indirect Cost: ¥5,400,000)
Fiscal Year 2011: ¥41,340,000 (Direct Cost: ¥31,800,000、Indirect Cost: ¥9,540,000)
Keywordsエピジェネティクス / イネ / 胚乳 / シロイヌナズナ / 生殖隔離機構 / ゲノムインプリンティング / 生殖隔離 / 野生イネ
Outline of Final Research Achievements

In plants, the endosperm is a site for hybridization barrier, where maternally- and paternally derived genomes have distinct roles for their development.
Classical studies predicted that the maternal genome represses endosperm growth and the paternal genome promote it. In this study, we conducted detailed analyses of the hybrid endosperms in interspecific or interploidy cross of rice or combination of those (Plant J. 2011, 2013, and in preparation). These analysis revealed that developmental transition under the control of Polycomb Repressive Complex 2 (PRC2) is a key determinant for this phenomena. We also identified several components for DNA demethylation that is required for activation of imprinted genes in Arabidopsis thaliana (Dev Cell 2011, New Phytologist 2013, PNAS 2014).

Report

(6 results)
  • 2016 Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (20 results)

All 2017 2015 2014 2013 2011 Other

All Journal Article (9 results) (of which Peer Reviewed: 8 results,  Acknowledgement Compliant: 3 results,  Open Access: 2 results) Presentation (2 results) Book (5 results) Remarks (4 results)

  • [Journal Article] 受精後雑種障壁研究の育種利用に向けて2017

    • Author(s)
      石井孝佳、岡本龍史、殿崎薫、長岐清孝、木下哲
    • Journal Title

      育種学研究

      Volume: 19 Pages: 35-40

    • NAID

      130006832293

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Possible roles for Polycomb repressive complex 2 in cereal endosperm.2015

    • Author(s)
      K. Tonosaki and T. Kinoshita
    • Journal Title

      Frontiers in Plant Science.

      Volume: 6 Pages: 144-144

    • DOI

      10.3389/fpls.2015.00144

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic role for the conserved Fe-S cluster biogenesis protein AtDRE2 in Arabidopsis thaliana2014

    • Author(s)
      Buzas, D., Nakamura, M., Kinoshita, T.
    • Journal Title

      PNAS

      Volume: 111 Issue: 37 Pages: 13565-13570

    • DOI

      10.1073/pnas.1404058111

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Genomic imprinting in plants: what makes the functions of paternal and maternal genes different in endosperm formation?2014

    • Author(s)
      Takayuki Ohnishi, Daisuke Sekine, Tetsu Kinoshita
    • Journal Title

      Advances in Genetics

      Volume: 86 Pages: 1-25

    • DOI

      10.1016/b978-0-12-800222-3.00001-2

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Epigenetic memory for stress response and adaptation in plants.2014

    • Author(s)
      Kinoshita, T., Seki., M.
    • Journal Title

      Plant and Cell Physiology

      Volume: 55 Issue: 11 Pages: 1859-1863

    • DOI

      10.1093/pcp/pcu125

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Dissection of two major components of the post-zygotic hybridization barrier in rice endospern2013

    • Author(s)
      Daisuke Sekine, Takayuki Ohnishi, Hiroyasu Furuumi, Akemi Ono, Toshihiro Yamada, Nori Kurata and Tetsu Kinoshita^*
    • Journal Title

      Plant Journal

      Volume: 76(5) Issue: 5 Pages: 792-799

    • DOI

      10.1111/tpj.12333

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis2013

    • Author(s)
      Vu TM, Nakamura M, Calarco JP, Susaki D, Lim PQ, Kinoshita T, Higashiyama T, Martienssen RA, Berger F.
    • Journal Title

      Development

      Volume: 140 Issue: 14 Pages: 2953-2960

    • DOI

      10.1242/dev.092981

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of Arabidopsis thaliana NAR1, a cytosolic iron-sulfur cluster assembly component, in gametophytic gene expression and oxidative stress responses in vegetative tissue2013

    • Author(s)
      Nakamura M, Buzas DM, Kato A, Fujita M, Kurata N, Kinoshita T.
    • Journal Title

      New Phytolosist

      Volume: 199 Issue: 4 Pages: 925-935

    • DOI

      10.1111/nph.12350

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] HMG domain containing SSRP1 is required for DNA demethylation and genomic imprinting in Arabidopsis2011

    • Author(s)
      池田陽子, 他8名
    • Journal Title

      Developmental Cell

      Volume: 21 Issue: 3 Pages: 589-596

    • DOI

      10.1016/j.devcel.2011.08.013

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] イネの倍数体間交雑における胚乳発生異常の解析

    • Author(s)
      関根大輔
    • Organizer
      日本植物生理学会
    • Place of Presentation
      京都府北区
    • Related Report
      2011 Annual Research Report
  • [Presentation] イネの胚乳発生・サイズを制御する父・母ゲノムの効果

    • Author(s)
      関根大輔
    • Organizer
      日本育種学会
    • Place of Presentation
      栃木県宇都宮市
    • Related Report
      2011 Annual Research Report
  • [Book] シロイヌナズナにおけるゲノムインプリンティングとDNAの脱メチル化の制御にはHMGドメインを含むタンパク質SSRP1をコードする遺伝子が必要である2011

    • Author(s)
      池田陽子
    • Total Pages
      8
    • Publisher
      新着論文レビュー
    • Related Report
      2011 Annual Research Report
  • [Book] HMG遺伝子SSRP1はシロイヌナズナにおけるDNA脱メチル化およびゲノムインプリンティングに必要である2011

    • Author(s)
      池田陽子
    • Total Pages
      9
    • Publisher
      学研メディカル秀順社
    • Related Report
      2011 Annual Research Report
  • [Book] 細胞履歴に基づく植物の形態形成2011

    • Author(s)
      木下哲
    • Total Pages
      12
    • Publisher
      高等研報告書
    • Related Report
      2011 Annual Research Report
  • [Book] ゲノムに刷り込まれた生殖隔離2011

    • Author(s)
      木下哲
    • Total Pages
      14
    • Publisher
      文一総合出版
    • Related Report
      2011 Annual Research Report
  • [Book] エピジェネティクス2011

    • Author(s)
      中村みゆき
    • Total Pages
      13
    • Publisher
      文一総合出版
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.yokohama-cu.ac.jp/univ/pr/press/140902_res.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] プレスリリース]バイオサイエンス研究科の池田陽子特任助教、木下哲特任准教授の研究グループ

    • URL

      http://www.naist.jp/news/detail_j/topics/1185/

    • Related Report
      2011 Annual Research Report
  • [Remarks] 鍵のかかった遺伝子の活性化に必要な新たな因子を同定: ~遺伝情報書き換えの仕組み解明に期待~

    • URL

      http://bsw3.naist.jp/achievements/index.php?id=647

    • Related Report
      2011 Annual Research Report
  • [Remarks] A new player for DNA demethylation and imprinting

    • URL

      http://bsw3.naist.jp/eng/researchtopics/2011/20110913.html

    • Related Report
      2011 Annual Research Report

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Published: 2011-08-01   Modified: 2019-07-29  

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