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Functional role of non-coding DNA region in DNA damage tolerance

Planned Research

Project AreaFunctions of non-coding DNA region for genome integrity
Project/Area Number 23114007
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionGakushuin University

Principal Investigator

HISHIDA Takashi  学習院大学, 理学部, 教授 (60335388)

Project Period (FY) 2011-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥122,330,000 (Direct Cost: ¥94,100,000、Indirect Cost: ¥28,230,000)
Fiscal Year 2015: ¥23,140,000 (Direct Cost: ¥17,800,000、Indirect Cost: ¥5,340,000)
Fiscal Year 2014: ¥23,140,000 (Direct Cost: ¥17,800,000、Indirect Cost: ¥5,340,000)
Fiscal Year 2013: ¥24,440,000 (Direct Cost: ¥18,800,000、Indirect Cost: ¥5,640,000)
Fiscal Year 2012: ¥24,180,000 (Direct Cost: ¥18,600,000、Indirect Cost: ¥5,580,000)
Fiscal Year 2011: ¥27,430,000 (Direct Cost: ¥21,100,000、Indirect Cost: ¥6,330,000)
KeywordsDNA修復 / DNA相同組換え / DNA損傷 / 非コードDNA / 紫外線 / 出芽酵母 / DNA複製 / 非コードDNA領域 / 突然変異 / DNA損傷トレランス
Outline of Final Research Achievements

Genomic integrity is constantly challenged by damage from a variety of sources such as certain chemical agents and UV radiation. The repetitive sequences and chromatin compaction characteristic of non-coding DNA are known to constitute a barrier for DNA replication and repair.Hence, DNA damage and replication stress caused in non-coding DNA regions are implicated in genomic instability. Yeast Srs2, conserved from bacteria to humans, plays important roles in the integrity of repetitive sequences by regulating homologous recombination (HR) pathway. In this study, we demonstrated that Srs2 participates in essential pathways preventing accumulation of inter-homolog recombination intermediates, thereby reducing the risk of genome instability. This work also identified novel H3/H4 alleles involved in replication stress tolerance, which requires a functional HR pathway. Thus, our data identify novel roles of Srs2 and histone H3/H4 in regulating the HR pathway.

Report

(6 results)
  • 2016 Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • Research Products

    (27 results)

All 2016 2015 2014 2013 2012 2011

All Journal Article (4 results) (of which Peer Reviewed: 4 results,  Open Access: 2 results,  Acknowledgement Compliant: 2 results) Presentation (21 results) (of which Invited: 2 results) Book (2 results)

  • [Journal Article] Srs2 and Mus81-Mms4 Prevent Accumulation of Toxic Inter-Homolog Recombination Intermediates2016

    • Author(s)
      Keyamura K, Arai K, Hishida T.
    • Journal Title

      PLoS Genet.

      Volume: 12(7)

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] RecA protein recruits structural maintenance of chromosomes (SMC)-like RecN protein to DNA double-strand breaks2013

    • Author(s)
      Keyamura K, Sakaguchi C, Kubota Y, Niki H, Hishida T.
    • Journal Title

      J Biol Chem.

      Volume: 288(41) Issue: 41 Pages: 29229-29237

    • DOI

      10.1074/jbc.m113.485474

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Chronic low-dose ultraviolet-induced mutagenesis in nucleotide excision repair-deficient cells2012

    • Author(s)
      Haruta, N., et al.
    • Journal Title

      Nucleic Acids Res.

      Volume: 40 Issue: 17 Pages: 8406-8415

    • DOI

      10.1093/nar/gks580

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] En bloc transfer of polyubiquitin chains to PCNA in vitro is mediated by two different human E2-E3 pairs2012

    • Author(s)
      Masuda Y
    • Journal Title

      Nucleic Acids Res.

      Volume: 40(20) Issue: 20 Pages: 10394-10407

    • DOI

      10.1093/nar/gks763

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] 出芽酵母DNA損傷トレランス経路関連タンパク質におけるリン酸化修飾の解析2016

    • Author(s)
      林匡史
    • Organizer
      第39回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2016-11-30
    • Related Report
      2015 Annual Research Report
  • [Presentation] Effects of chronic low-dose UV irradiation in nucleotide excision repair-deficient cells2016

    • Author(s)
      Takashi Hishida
    • Organizer
      The 10th 3R symposium
    • Place of Presentation
      島根県松江市
    • Year and Date
      2016-11-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 複製ストレス応答における出芽酵母Mgs1の役割2016

    • Author(s)
      長谷川ゆき
    • Organizer
      第89回日本遺伝学会
    • Place of Presentation
      日本大学(静岡県三島市)
    • Year and Date
      2016-09-07
    • Related Report
      2015 Annual Research Report
  • [Presentation] 慢性的な紫外線ストレスに対する出芽酵母ヌクレオチド除去修復欠損株の耐性獲得メカニズム2016

    • Author(s)
      塩入拓馬
    • Organizer
      第89回日本遺伝学会
    • Place of Presentation
      日本大学(静岡県三島市)
    • Year and Date
      2016-09-07
    • Related Report
      2015 Annual Research Report
  • [Presentation] 出芽酵母Srs2ヘリカーゼとMus81-Mms4ヌクレアーゼによる相同染色体間の組換え制御機構2015

    • Author(s)
      毛谷村賢司
    • Organizer
      第23回DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      静岡県焼津市
    • Year and Date
      2015-10-19
    • Related Report
      2015 Annual Research Report
  • [Presentation] DNA損傷ストレス応答に影響を及ぼすヒストン変異体の解析2014

    • Author(s)
      吉田 麻美、毛谷村 賢司、菱田 卓
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] 出芽酵母Mgs1タンパク質の機能ドメインの解析2014

    • Author(s)
      重森 悠、毛谷村 賢司、菱田 卓
    • Organizer
      第37回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Roles of the Saccharomyces cerevisiae Srs2 helicase in inter-homologue recombination repair2014

    • Author(s)
      Kenji Keyamura, Kota Arai, Takashi Hishida
    • Organizer
      3R symposium
    • Place of Presentation
      静岡県御殿場高原ホテル
    • Year and Date
      2014-11-17 – 2014-11-21
    • Related Report
      2014 Annual Research Report
  • [Presentation] 慢性的な紫外線損傷ストレスに対する耐性獲得に関与するヌクレオソーム構造2014

    • Author(s)
      菱田 卓
    • Organizer
      日本放射線影響学会57回大会
    • Place of Presentation
      鹿児島県民交流センター
    • Year and Date
      2014-10-01 – 2014-10-03
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] DNA二本鎖切断修復に関与するRecNのDNA相互作用メカニズムの解析2014

    • Author(s)
      毛谷村 賢司、金子 佳樹、仁木 宏典、菱田 卓
    • Organizer
      21世紀大腸菌研究会
    • Place of Presentation
      岩手県盛岡市
    • Year and Date
      2014-06-05 – 2014-06-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] SMCファミリータンパク質RecNのDNA二重鎖切断修復における役割2013

    • Author(s)
      毛谷村賢司、久保田佳乃、小林万希子、金子佳樹、仁木宏典、菱田卓
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2013-12-03 – 2013-12-06
    • Related Report
      2013 Annual Research Report
  • [Presentation] 出芽酵母を用いたジーンターゲティングに関与する新規因子の同定2013

    • Author(s)
      櫻本健郎、毛谷村賢司、菱田卓
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2013-12-03 – 2013-12-06
    • Related Report
      2013 Annual Research Report
  • [Presentation] 相同染色体間の組換えにおける出芽酵母 Srs2 へリカーゼの役割2013

    • Author(s)
      毛谷村賢司、新井康太、菱田卓
    • Organizer
      第22回複製・組換え・修復ワークショップ
    • Place of Presentation
      宮城県秋保温泉
    • Year and Date
      2013-11-20 – 2013-11-22
    • Related Report
      2013 Annual Research Report
  • [Presentation] 出芽酵母を用いたジーンターゲティングに関する新規遺伝子の探索2013

    • Author(s)
      櫻本健郎、毛谷村賢司、菱田卓
    • Organizer
      第22回複製・組換え・修復ワークショップ
    • Place of Presentation
      宮城県秋保温泉
    • Year and Date
      2013-11-20 – 2013-11-22
    • Related Report
      2013 Annual Research Report
  • [Presentation] 相同染色体間のDNA相同組換え制御メカニズムの解析2013

    • Author(s)
      毛谷村賢司、新井康太、菱田卓
    • Organizer
      第85回日本遺伝学会
    • Place of Presentation
      慶応大学
    • Year and Date
      2013-09-19 – 2013-09-21
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA二重鎖切断修復に関与するSMCファミリータンパク質RecNの機能解析2013

    • Author(s)
      毛谷村賢司、久保田佳乃、仁木宏典、菱田卓
    • Organizer
      第10回21世紀大腸菌研究会
    • Place of Presentation
      伊豆・修善寺
    • Year and Date
      2013-06-20 – 2013-06-21
    • Related Report
      2013 Annual Research Report
  • [Presentation] DNA二本鎖切断修復に関与する大腸菌RecNタンパク質の機能解析2012

    • Author(s)
      菱田 卓
    • Organizer
      第9回21世紀大腸菌研究会
    • Place of Presentation
      滋賀県長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 慢性的な紫外線照射による突然変異の誘起メカニズムの解析2012

    • Author(s)
      菱田 卓
    • Organizer
      日本放射線影響学会第55回大会
    • Place of Presentation
      東北大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 相同染色体間のDNA相同組換え制御メカニズムの解析2012

    • Author(s)
      新井康太
    • Organizer
      第84回日本遺伝学会
    • Place of Presentation
      九州大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Srs2による相同染色体間の組換え制御機構2012

    • Author(s)
      新井康太
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNA損傷ストレスに対する耐性獲得に必要な3つの力2011

    • Author(s)
      菱田卓
    • Organizer
      学習院大学生命科学シンポジウム
    • Place of Presentation
      学習院大学
    • Year and Date
      2011-04-23
    • Related Report
      2011 Annual Research Report
  • [Book] ゲノムを司るインターメア(第13章;非コードDNA領域のDNA損傷応答)2015

    • Author(s)
      菱田 卓
    • Total Pages
      13
    • Publisher
      化学同人
    • Related Report
      2015 Annual Research Report
  • [Book] パリティ(DNA修復の分子メカニズムの解明)2015

    • Author(s)
      菱田 卓
    • Total Pages
      3
    • Publisher
      丸善出版
    • Related Report
      2015 Annual Research Report

URL: 

Published: 2011-08-01   Modified: 2019-07-29  

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