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Elucidation of the working principle of repetitive motors driving protein export

Planned Research

Project AreaHarmonized supramolecular machinery for motility and its diversity
Project/Area Number 24117003
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyoto University

Principal Investigator

Mori Hiroyuki  京都大学, ウイルス・再生医科学研究所, 准教授 (10243271)

Co-Investigator(Renkei-kenkyūsha) TSUKAZAKI Tomoya  奈良先端科学技術大学院大学, バイサイエンス研究科, 准教授 (80436716)
Project Period (FY) 2012-06-28 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥86,970,000 (Direct Cost: ¥66,900,000、Indirect Cost: ¥20,070,000)
Fiscal Year 2016: ¥16,640,000 (Direct Cost: ¥12,800,000、Indirect Cost: ¥3,840,000)
Fiscal Year 2015: ¥16,640,000 (Direct Cost: ¥12,800,000、Indirect Cost: ¥3,840,000)
Fiscal Year 2014: ¥16,770,000 (Direct Cost: ¥12,900,000、Indirect Cost: ¥3,870,000)
Fiscal Year 2013: ¥16,640,000 (Direct Cost: ¥12,800,000、Indirect Cost: ¥3,840,000)
Fiscal Year 2012: ¥20,280,000 (Direct Cost: ¥15,600,000、Indirect Cost: ¥4,680,000)
KeywordsSecDF / タンパク質膜透過 / プロトン駆動力 / SecA ATPase / 大腸菌 / ビブリオ菌 / 細菌 / モータータンパク質 / 膜透過 / SecA / トランスロコン / PMF / SecYEG / 分泌 / YidC / タンパク質分泌 / 反復モータ / イオンチャネル / エネルギー変換
Outline of Final Research Achievements

In bacteria, protein translocation is mediated by two repetitive motors, SecA ATPase and SecDF, which exist on the cytoplasmic side and periplasic side of the SecYEG channel, respectively. In order to elucidate how these two motors contribute to protein translocation reaction, we carried out the following experiments. 1) We systematically performed site-directed in vivo photo cross-linking experiments targeted to E. coli SecD and identified a substrate binding site in the SecD protein. 2) We determined new crystal structures of SecDF in collaboration with Dr. Tsukazaki and carried out structure-instructed biochemical studies. 3) We determined biochemical properties and physiological functions of two SecDF paralogs in Vibrio alginolyticus.

Report

(6 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • 2012 Annual Research Report
  • Research Products

    (24 results)

All 2017 2016 2015 2014 2013 2012

All Journal Article (10 results) (of which Peer Reviewed: 9 results,  Open Access: 5 results,  Acknowledgement Compliant: 6 results) Presentation (14 results) (of which Int'l Joint Research: 2 results,  Invited: 13 results)

  • [Journal Article] Tunnel formation inferred from the I form structures of the proton-driven protein secretion motor SecDF2017

    • Author(s)
      Furukawa, A., Yoshikaie, K., Mori, T., Mori, H., Morimoto, Y. V., Sugano, Y., Iwaki, S., Minamino, T., Sugita, Y., Tanaka, Y. and Tsukazaki, T.
    • Journal Title

      Cell Reports

      Volume: 印刷中

    • NAID

      120006353868

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ビブリオ属細菌における二つのタンパク質膜透過促進因子の生理的意義と使い分け機構2017

    • Author(s)
      石井英治、森 博幸
    • Journal Title

      医学の歩み

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
  • [Journal Article] A novel SRP recognition sequence in the homeostatic control region od heat shock transcription factor sigma 322016

    • Author(s)
      Miyazaki, R., Yura, T., Suzuki, T. Dohmae, N., Mori, H. and Akiyama, Y.
    • Journal Title

      Scientfic reports

      Volume: 6 Issue: 1 Pages: 24147-24147

    • DOI

      10.1038/srep24147

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria2015

    • Author(s)
      Ishii, E., Chiba, S., Hashimoto, N., Kojima, S., Homma, M., Ito, K., Akiyama, Y. and Mori, H.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 112 Issue: 40

    • DOI

      10.1073/pnas.1513001112

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Roles of the membrane-reentrant β-hairpin-like loop of RseP protease in selective substrate cleavage2015

    • Author(s)
      Koichiro Akiyama, Shinya Mizuno, Yohei Hizukuri, Hiroyuki Mori, Terukazu Nogi, Yoshinori Akiyama
    • Journal Title

      eLife

      Volume: 4

    • DOI

      10.7554/elife.08928

    • NAID

      120005712942

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Crystal structure of Escherichia coli YidC, a membrane protein chaperone and insertase2014

    • Author(s)
      Kumazaki, K., Kishimoto, T., Furukawa, A., Mori, H., Tanaka, Y., Dohmae, N., Ishitani, R., Tsukazaki, T., and Nureki, O.
    • Journal Title

      Scientific reports

      Volume: 4 Issue: 1 Pages: 7299-7299

    • DOI

      10.1038/srep07299

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Structural basis for Sec-independent membrane protein insertion by YidC.2014

    • Author(s)
      Kumazaki, K., Chiba, S., Takemoto, M., Furukawa, A., Nishiyama, K., Sugano, Y., Mori, T., Dohmae, N., Hirata, K., Nakada-Nakura, Y., Maturana, A.D., Tanaka, Y., Mori, H., Sugita, Y., Arisaka, F., Ito K., Ishitani, R., Tsukazaki, T. and Nureki, O.
    • Journal Title

      Nature

      Volume: 509 Issue: 7501 Pages: 516-520

    • DOI

      10.1038/nature13167

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Conformational variation of the translocon enhancing chaperone SecDF2014

    • Author(s)
      K.Mio, T.Tsukazaki, H.Mori, M.Kawata, T.Moriya, Y.Sasaki, R.Ishitani, K.Ito, O.Nurekiand C.Sato
    • Journal Title

      J Struct Funct Genomics

      Volume: 15 Issue: 3 Pages: 107-115

    • DOI

      10.1007/s10969-013-9168-4

    • NAID

      120005716853

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural basis for Sec-independent membrane protein insertion by YidC2014

    • Author(s)
      Kumazaki K, Chiba S, Takemoto M, Furukawa A, Nishiyama K, Sugano Y, Mori T, Dohmae N, Hirata K, Nakada-Nakura Y, Maturana A, Tanaka Y, Mori H, Sugita Y, Arisaka F, Ito K, Ishitani R, Tsukazaki T, Nureki O
    • Journal Title

      Nature

      Volume: 未定

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 細菌のタンパク質分泌を促進する膜タンパク質SecDFの構造と機能2013

    • Author(s)
      森 博幸、塚崎智也
    • Journal Title

      化学と生物

      Volume: 51 Pages: 28-35

    • NAID

      10031146872

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Presentation] タンパク質膜透過を駆動するモータータンパク質のスナップショット2016

    • Author(s)
      古川 新 , 吉海江 国仁 , 森 貴治 , 森 博幸 , 森本 雄祐 , 菅野 泰功 , 岩木 薫大 , 南野 徹 , 杉田 有治 , 田中 良樹 , 塚崎 智也
    • Organizer
      第54回日本生物物理学会年会シンポジウム「次世代研究者による動的構造生命」
    • Place of Presentation
      筑波
    • Year and Date
      2016-11-25
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria.2016

    • Author(s)
      Mori, H., Ishii, E., Chiba, S., Sakashita, S., Ito, K. & Akiyama, Y.
    • Organizer
      NASCENT CHAIN BIOLOGY
    • Place of Presentation
      山梨
    • Year and Date
      2016-09-01
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 2つの反復モーターによるタンパク質膜透過駆動メカニズム2016

    • Author(s)
      森 博幸
    • Organizer
      第6回分子モーター討論会
    • Place of Presentation
      大阪
    • Year and Date
      2016-07-24
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] 部位特異的in vivo光架橋法を用いた生細胞内の動的タンパク質間相互作用解析2016

    • Author(s)
      森 博幸、宮崎亮次、町田裕紀子、三登一八、何あゆみ、秋山光市郎、大門康志、舛井千草、塚崎智也、成田新一郎、秋山芳展
    • Organizer
      第16回日本蛋白質科学会年会ワークショップ「人工的にカスタマイズされた蛋白質による生命現象の再構成」
    • Place of Presentation
      福岡
    • Year and Date
      2016-06-07
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] ビブリオ菌SecDFパラログの発現制御と生理機能2016

    • Author(s)
      森 博幸
    • Organizer
      2015年度 遺伝研研究会 「単細胞の細胞構築・運動・増殖機構の研究」
    • Place of Presentation
      三島
    • Year and Date
      2016-03-25
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Environmental adaptation of marine Vibrio by nascent chain-mediated remodeling of protein export machinery2016

    • Author(s)
      Mori, H.
    • Organizer
      RNA2016 satellite-symposium “Nascent biology and Ribosome functions”
    • Place of Presentation
      京都
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Nascent chain-monitored remodeling of the Sec machinery for salinity adaptation of marine bacteria.2015

    • Author(s)
      Mori, H., Ishii, E., Chiba, S., Hashimoto, N., Kojima, S., Homma, M., Ito, K. and Akiyama, Y.
    • Organizer
      BMB2015 Symposium “Nascent chains: the ribosome as a hub for protein quality control”
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] タンパク質分泌を駆動する反復モーターの駆動原理.2015

    • Author(s)
      森 博幸
    • Organizer
      第53回生物物理学会年会シンポジウム「生体マシナリーにおける力発生と進化の共通原理」
    • Place of Presentation
      金沢
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Nascent chain-mediated regulation of a SecDF paralog optimizes sodium dependence of protein export for environmental adaptation of a marine-estuarine bacterium, Vibrio alginolyticus2015

    • Author(s)
      H. Mori, E. Ishii, S. Chiba, N. Hashimoto, S. Kojima, M. Homma, K. Ito and Y. Akiyama
    • Organizer
      Progress 100: Kyushu-U and Stanford-U Joint Research and Education Program First Symposium: From Genes to Human Diseases
    • Place of Presentation
      福岡
    • Year and Date
      2015-03-16 – 2015-03-17
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] The mode of expression and physiological roles of SecDF paralogs, protein translocation enhancing factors, in Vibrio alginolyticus2014

    • Author(s)
      Ishii E, Hashimoto N, Chiba S, Kojima S, Homma M, Ito K, Akiyama Y, Mori H
    • Organizer
      第9回研究所ネットワー ク国際シンポジウム
    • Place of Presentation
      大阪
    • Related Report
      2013 Annual Research Report
  • [Presentation] 分泌タンパク質VemPの翻訳停止と共役したV.SecD2の発現上昇2014

    • Author(s)
      森 博幸
    • Organizer
      2013年度国立遺伝学研究所研究会「単細胞システムの細胞構築・運動・増殖機構の研究」
    • Place of Presentation
      三島
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Structure and function of SecDF, a membrane integrated protein translocation enhancing factor2013

    • Author(s)
      森 博幸、塚崎智也、町田裕紀子、三登一八、濡木理、伊藤維昭、秋山芳展
    • Organizer
      第86回日本細菌学会ワークショップ
    • Place of Presentation
      千葉
    • Year and Date
      2013-03-18
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Structure and function of SecDF, a membrane integrated protein translocation enhancing factor2013

    • Author(s)
      Mori H, Mito K, Machida Y, Tsukazaki T, Nureki O, Ito K, Akiyama Y
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] ビブリオ菌のタンパク質分泌マシナリー:SecDFパラログの発現制御機構2012

    • Author(s)
      森 博幸、橋本成祐、小嶋誠司、本間道夫、秋山芳展
    • Organizer
      第85回日本生化学会大会シンポジウム
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-14
    • Related Report
      2012 Annual Research Report
    • Invited

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Published: 2012-11-27   Modified: 2019-07-29  

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