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Exploring regulatory association and dissociation processes of biological molecules constituting a functional module

Planned Research

Project AreaDynamical ordering of biomolecular systems for creation of integrated functions
Project/Area Number 25102003
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Science and Engineering
Research InstitutionNara Institute of Science and Technology

Principal Investigator

Kamikubo Hironari  奈良先端科学技術大学院大学, 先端科学技術研究科, 教授 (20311128)

Co-Investigator(Kenkyū-buntansha) 片岡 幹雄  一般財団法人総合科学研究機構(総合科学研究センター(総合科学研究室)及び中性子科学センター(研究開発, 中性子科学センター, サイエンスコーディネーター (30150254)
Project Period (FY) 2013-06-28 – 2018-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥92,430,000 (Direct Cost: ¥71,100,000、Indirect Cost: ¥21,330,000)
Fiscal Year 2017: ¥13,260,000 (Direct Cost: ¥10,200,000、Indirect Cost: ¥3,060,000)
Fiscal Year 2016: ¥14,170,000 (Direct Cost: ¥10,900,000、Indirect Cost: ¥3,270,000)
Fiscal Year 2015: ¥15,990,000 (Direct Cost: ¥12,300,000、Indirect Cost: ¥3,690,000)
Fiscal Year 2014: ¥19,890,000 (Direct Cost: ¥15,300,000、Indirect Cost: ¥4,590,000)
Fiscal Year 2013: ¥29,120,000 (Direct Cost: ¥22,400,000、Indirect Cost: ¥6,720,000)
KeywordsX線溶液散乱 / タンパク質 / 分子複合系 / 多成分平衡状態 / 相互作用解析 / μ流路 / 光センサータンパク質 / 情報伝達 / 蛋白質 / マイクロ流路 / 生物物理学 / 構造生物学 / 動的秩序 / マルチドメイン蛋白質 / 蛋白質集団
Outline of Final Research Achievements

We have developed a new analytical method that would enable us to perform structure and interaction analyses on multi-component equilibrium systems. Here, we have successfully developed the microfluidics-based, auto sampling equipment designed for continuous titration SAXS. Using this newly designed equipment, we can automatically collect numerous scattering profiles while altering the molar ratios of each component involved in the multi-component equilibrium; thus, enabling us to determine the system’s free energy landscape of the multi-component equilibrium. We performed a feasibility study of titration-SAXS measurements on a signal transduction system, which allow us to extract scattering curves of multiple complexes and their concentration dependence. The method is found to be applicable in wide range of understanding the dynamical ordering of complex molecular systems.

Academic Significance and Societal Importance of the Research Achievements

以上の研究を通じ、当初目的としていた多成分混合溶液の動的秩序を解析する新しい手法を提案することに成功した。更に、Native-MSや高速AFM等の測定手法を統合的に活用することによって、複雑な系であっても定量的な解析が可能であることを示すことができた。ここで示した統合解析は、タンパク質に一般的な性質、すなわち、分子量、分子形状、分子形状変化を指標としており対象を選ばない。今後は、より生理学的、薬理学的に重要度が高いタンパク質集団の動的秩序を解析し、生理活性や薬理活性の機序を分子論に明らかにすることで新たな作用機序に基づいた創薬の実現を目指す。

Report

(6 results)
  • 2018 Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (148 results)

All 2018 2017 2016 2015 2014 2013 2012 Other

All Int'l Joint Research (4 results) Journal Article (22 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 22 results,  Open Access: 14 results,  Acknowledgement Compliant: 2 results) Presentation (122 results) (of which Int'l Joint Research: 18 results,  Invited: 25 results)

  • [Int'l Joint Research] UC Davis(米国)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Aarhus University(Denmark)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] University of Groningen(オランダ)

    • Related Report
      2016 Annual Research Report
  • [Int'l Joint Research] Aarhus university(Denmark)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Solution scattering approaches to dynamical ordering in biomolecular systems2018

    • Author(s)
      Bernad? Pau、Shimizu Nobutaka、Zaccai Giuseppe、Kamikubo Hironari、Sugiyama Masaaki
    • Journal Title

      Biochimica et Biophysica Acta (BBA) - General Subjects

      Volume: 1862 Issue: 2 Pages: 253-274

    • DOI

      10.1016/j.bbagen.2017.10.015

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of <b><i>µ</i></b>-fluidics Based Auto Sampling System Designed for Continuous Titration SAXS Experiments2018

    • Author(s)
      KAMIKUBO Hironari
    • Journal Title

      Journal of Computer Chemistry, Japan

      Volume: 17 Issue: 1 Pages: 57-64

    • DOI

      10.2477/jccj.2018-0008

    • NAID

      130006555814

    • ISSN
      1347-1767, 1347-3824
    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Active-Site pKa Determination for Photoactive Yellow Protein Rationalizes Slow Ground-State Recovery2017

    • Author(s)
      Oktaviani Nur Alia、Pool Trijntje J.、Yoshimura Yuichi、Kamikubo Hironari、Scheek Ruud M.、Kataoka Mikio、Mulder Frans A.A.
    • Journal Title

      Biophysical Journal

      Volume: 112 Issue: 10 Pages: 2109-2116

    • DOI

      10.1016/j.bpj.2017.04.008

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Aggregation Control by Multi-stimuli-Responsive Poly(N-vinylamide) Derivatives in Aqueous System2017

    • Author(s)
      Kawatani Ryo、Nishiyama Yasuhiro、Kamikubo Hironari、Kakiuchi Kiyomi、Ajiro Hiroharu
    • Journal Title

      Nanoscale Research Letters

      Volume: 12 Issue: 1 Pages: 461-461

    • DOI

      10.1186/s11671-017-2221-7

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI2017

    • Author(s)
      Nawata Marina、Tsutsumi Hirotaka、Kobayashi Yuta、Unzai Satoru、Mine Shouhei、Nakamura Tsutomu、Uegaki Koichi、Kamikubo Hironari、Kataoka Mikio、Hamada Daizo
    • Journal Title

      The FEBS Journal

      Volume: 284 Issue: 18 Pages: 3114-3127

    • DOI

      10.1111/febs.14181

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal2017

    • Author(s)
      Yonezawa Kento、Shimizu Nobutaka、Kurihara Kazuo、Yamazaki Yoichi、Kamikubo Hironari、Kataoka Mikio
    • Journal Title

      Sci. Rep.

      Volume: 7 Issue: 1 Pages: 9361-9361

    • DOI

      10.1038/s41598-017-09718-9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT2017

    • Author(s)
      Satoh Tadashi、Song Chihong、Zhu Tong、Toshimori Takayasu、Murata Kazuyoshi、Hayashi Yugo、Kamikubo Hironari、Uchihashi Takayuki、Kato Koichi
    • Journal Title

      Scientific Reports

      Volume: 7 Issue: 1 Pages: 12142-12142

    • DOI

      10.1038/s41598-017-12283-w

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Statistical description of the denatured structure of a single protein, staphylococcal nuclease, by FRET analysis2017

    • Author(s)
      Yamaguchi Mariko、Ohta Emi、Muto Takuya、Watanabe Takayoshi、Hohsaka Takahiro、Yamazaki Yoichi、Kamikubo Hironari、Kataoka Mikio
    • Journal Title

      Biophys Rev.

      Volume: 10(2) Issue: 2 Pages: 145-152

    • DOI

      10.1007/s12551-017-0334-y

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Probing the early stages of photoreception in photoactive yellow protein with ultrafast time-domain Raman spectroscopy2017

    • Author(s)
      H. Kuramochi , S. Takeuchi ,K. Yonezawa , H. Kamikubo , M. Kataoka, T.Tahara
    • Journal Title

      Nature Chemistry

      Volume: - Issue: 7 Pages: 660-666

    • DOI

      10.1038/nchem.2717

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] VIPP1 has a disordered C-terminal tail necessary for protecting photosynthetic membranes against stress in Arabidopsis2016

    • Author(s)
      L. Zhang, H. Kondo, H. Kamikubo, M. Kataoka, W. Sakamoto
    • Journal Title

      Plant Physiology

      Volume: 171 Issue: 3 Pages: 1983-1995

    • DOI

      10.1104/pp.16.00532

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Unambiguous Determination of the Ionization State of a Photoactive Protein Active Site Arginine in Solution by NMR Spectroscopy2016

    • Author(s)
      Y. Yoshimura, N. A.Oktaviani, K.Yonezawa, H.Kamikubo, F. A. A. Mulder
    • Journal Title

      Angewandte Chemie

      Volume: 56 Issue: 1 Pages: 239-242

    • DOI

      10.1002/anie.201609605

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Polyglycine acts as a rejection signal for protein transport at the chloroplast envelope2016

    • Author(s)
      J. K. Endow, A. G. Rocha , A. J. Baldwin , R. L. Roston , T. Yamaguchi, H. Kamikubo, K. Inoue
    • Journal Title

      PLOS ONE

      Volume: 11(12) Issue: 12 Pages: e0167802-e0167802

    • DOI

      10.1371/journal.pone.0167802

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Vibrational analysis on the revised potential energy curve of the low-barrier hydrogen bond in photoactive yellow protein2015

    • Author(s)
      Yusuke Kanematsu, Hironari Kamikubo, Mikio Kataoka, Masanori Tachikawa
    • Journal Title

      Computational and Structural Biotechnology Journal

      Volume: 14 Pages: 16-19

    • DOI

      10.1016/j.csbj.2015.10.003

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551: Structural insights into domain swapping of cytochrome c family proteins2015

    • Author(s)
      Satoshi Nagao, Mariko Ueda, Hisao Osuka, Hirofumi Komori, Hironari Kamikubo, Mikio Kataoka, Yoshiki Higuchi, Shun Hirota
    • Journal Title

      PLoS One

      Volume: 10 Issue: 4 Pages: e0123653-e0123653

    • DOI

      10.1371/journal.pone.0123653

    • NAID

      120005716860

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Decreased amyloidogenicity by mutational modulation of surface properties of the immunoglobulin light chain BRE variable domain2014

    • Author(s)
      Yuta Kobayashi, Hirotaka Tsutsumi, Tetsuyuki Abe, Kyohei Ikeda, Yuki Tashiro, Satoru Unzai, Hironari Kamikubo, Mikio Kataoka, Hidekazu Hiroaki, Daizo Hamada
    • Journal Title

      Biochemistry

      Volume: 53(31) Issue: 31 Pages: 5162-5173

    • DOI

      10.1021/bi5007892

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Formation of Domain-Swapped Oligomer of Cytochrome c from Its Molten Globule State Oligomer2014

    • Author(s)
      Megha Deshpande, Partha Parui, Hironari Kamikubo, Masaru Yamanaka, Satoshi Nagao, Hirofumi Komori, Mikio Kataoka, Yoshiki Higuchi, Shun Hirota
    • Journal Title

      Biochemistry

      Volume: 53(28) Issue: 28 Pages: 4696-4703

    • DOI

      10.1021/bi500497s

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preferential domain orientation of HMGB2 determined by the weak intramolecular interactions mediated by the interdomain linker2013

    • Author(s)
      J. Uewaki, H. Kamikubo, J. Kurita, N. Hiroguchi, H. Moriuchi, M. Yoshida, M. Kataoka, N. U.-Tate, S. Tate
    • Journal Title

      Chem.Phys

      Volume: 419 Pages: 212

    • DOI

      10.1016/j.chemphys.2013.02.004

    • URL

      https://pure.teikyo.jp/en/publications/d5a2b53c-f986-4ac3-b994-d5a09681cf5f

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Fingerprint signatures of lanthanide circularly polarized luminescence from proteins covalently labeled by a β -diketonate europium(III) chelate2013

    • Author(s)
      Junpei Yuasa
    • Journal Title

      Chem. Commn.

      Volume: 49 Issue: 41 Pages: 4604-4606

    • DOI

      10.1039/c3cc40331a

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular dissection of IZUMO1, a sperm protein essential for sperm-egg fusion2013

    • Author(s)
      Inoue N, Hamada D, Kamikubo H, Hirata K, Kataoka M, Yamamoto M, Ikawa M, Okabe M, Hagihara Y
    • Journal Title

      Development

      Volume: 140(15) Issue: 15 Pages: 3221-3229

    • DOI

      10.1242/dev.094854

    • NAID

      120006957398

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis of α-Catenin Recognition by EspB from Enterohaemorrhagic E. coli Based on Hybrid Strategy Using Low-Resolution Structural and Protein Dissection2013

    • Author(s)
      Mitsuhide Hamaguchi
    • Journal Title

      PLoS One

      Volume: 8 Issue: 8 Pages: 71618-71618

    • DOI

      10.1371/journal.pone.0071618

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Excited-State Proton Transfer in Fluorescent Photoactive Yellow Protein Containing 7-Hydroxycoumarin2013

    • Author(s)
      Dian Novitasari
    • Journal Title

      Advanced Materials Reserch

      Volume: 896 Pages: 85-88

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Theoretical analysis of the geometrical isotope effect on the hydrogen bonds in photoactive yellow protein with multi-component density functional theory2012

    • Author(s)
      Y. Kita, H. Kamikubo, M. Kataoka, M. Tachikawa
    • Journal Title

      Chem. Phys

      Volume: 419 Pages: 50-53

    • DOI

      10.1016/j.chemphys.2012.11.022

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] Structural Exploring Multi-component Equilibrium in Biological Systems by using Continuous Titration SAXS2018

    • Author(s)
      Hironari Kamikubo
    • Organizer
      The6th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Multiple phosphorylation and structural alteration of shootin12018

    • Author(s)
      Shoki Nakata , Kentarou Baba, Yugo Hayashi,Yoichi Yamazaki, Naoyuki Inagaki, Hironari Kamikubo
    • Organizer
      The 6th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structure and interaction analysis of the complex molecular systems (GGA/Arf/MPR/Ub) involved in Clathrin-coated vesicles2018

    • Author(s)
      Endo Natsumi, Yugo Hayashi, Miho Shinohara, Keito Yoshida, Yoichi Yamazaki, Hironari Kamikubo
    • Organizer
      The 6th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 光による蛋白質分子複合系の自由エネルギーランドスケープの変調2018

    • Author(s)
      上久保 裕生
    • Organizer
      日本化学会 第98回春季年会(2018)
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Multi-component equilibrium in biological systems explored by using continuous titration SAXS2017

    • Author(s)
      Hironari Kamikubo
    • Organizer
      Frontier Bioorganization Forum 2017 Dynamical ordering and integrated functions of biomolecular systems
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 機能を生み出す単位生体分子集団(機能モジュール)の動的秩序の探査2017

    • Author(s)
      上久保 裕生
    • Organizer
      平成29年度新学術領域研究「動的秩序と機能」全体班会議
    • Related Report
      2017 Annual Research Report
  • [Presentation] Structure-based analysis on the equilibrium state of a multi-component system2017

    • Author(s)
      上久保 裕生, 山崎 洋一
    • Organizer
      第17回日本蛋白質科学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Photoproducts of PYP Phytochrome Related (Ppr) protein accumulated under various illumination conditions2017

    • Author(s)
      Jia-Siang Sum、山崎 洋一 、林 有吾、上久保 裕生
    • Organizer
      第17回日本蛋白質科学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Structural Exploring Multi-component Equilibrium in Biological Systems2017

    • Author(s)
      Hironari Kamikubo
    • Organizer
      the 24th Congress & General Assembly of the International Union of Crystallography
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Light dependent multiple complex formation of Rc-PYP2017

    • Author(s)
      Yoichi Yamazaki, Yohei Shibata, Yugo Hayashi, Nathumi Endo, Kentaro Ishii, Susumu Uchiyama, Takayuki Uchihashi, Hironari Kamikubo
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Self-assembly of nanofibers from spider silk fibroin2017

    • Author(s)
      Yugo Hayashi, Tomoaki Murakami, Mai Arakawa, Keito Yoshida, Yoichi Yamazaki, Takehiro K. Sato, Hironari Kamikubo
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Structure elements are closely related to intramolecular residue-residue contacts2017

    • Author(s)
      Yasumichi Takase, Yugo Hayashi, Yoichi Yamazaki, Hironari Kamikubo
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Influence of the PYP domain on Photoreaction of the phytochrome domain in Ppr2017

    • Author(s)
      Jia Siang Sum, Yoichi Yamazaki, Yugo Hayashi, Hironari Kamikubo
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Multiple phosphorylated species of shootin1 and their solution structure2017

    • Author(s)
      Shoki Nakata, Kentarou Baba, Yugo Hayashi, Yoichi Yamazaki, Naoyuki Inagaki, Hironari Kamikubo
    • Organizer
      第55回日本生物物理学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 複数混合溶液中に存在する生体高分子の構造・相互作用評価2017

    • Author(s)
      上久保 裕生
    • Organizer
      分子・物質合成プラットフォーム、大学連携研究設備ネットワーク主催 「ソフトでウェットな素材のやさしい観察」
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 連続滴定溶液散乱測定による蛋白質分子複合系の多成分平衡状態の解析2017

    • Author(s)
      上久保 裕生
    • Organizer
      第40回溶液化学シンポジウム
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 混合溶液中の蛋白質分子複合系の構造・相互作用評価~デバイス開発とその応用~2017

    • Author(s)
      上久保 裕生
    • Organizer
      日本学術振興会 構造生物第169委員会 第54回研究会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] イエロープロテインの中性子結晶構造解析2017

    • Author(s)
      片岡幹雄、米澤健人、清水伸隆、栗原和夫、上久保裕生
    • Organizer
      日本中性子科学会 第17回年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 連続滴定溶液散乱による多成分系解析の標準化2017

    • Author(s)
      上久保 裕生
    • Organizer
      第4回タンパク質X線溶液散乱講習会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] 蛋白質溶液散乱を用いた多成分平衡状態の構造/相互作用解析の試み2016

    • Author(s)
      上久保裕生
    • Organizer
      PF研究会「徹底討論!小角散乱の魅力~基礎・応用・産業利用」
    • Place of Presentation
      高エネルギー加速器研究機構 物質構造科学研究所( 茨城県つくば市)
    • Year and Date
      2016-03-30
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2016

    • Author(s)
      Chiaki Ota, Hiroko Tanaka, Yoichi Yamazaki, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      The Biophycial Society 60th Annual Meeting
    • Place of Presentation
      Los Angeles, USA
    • Year and Date
      2016-03-01
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Development of auto-sampling system designed for titration-saxs to investigate protein complexes under an equilibrium condition2016

    • Author(s)
      Hironari Kamikubo, Keito Yoshida, Nobutaka Shimizu, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      The Biophycial Society 60th Annual Meeting
    • Place of Presentation
      Los Angeles, USA
    • Year and Date
      2016-02-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 機能を生み出す単位生体分子集団(機能モジュール)の動的秩序の探査2016

    • Author(s)
      上久保 裕生
    • Organizer
      平成28年度新学術領域研究「動的秩序と機能」全体班会議
    • Related Report
      2016 Annual Research Report
  • [Presentation] システムズバイオロジーを指向した構造生物学的手法の開発2016

    • Author(s)
      上久保 裕生
    • Organizer
      平成28年度第1回生物構造学研究会
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Dynamical characterization of a denaturant denatured state by using the lifetime measurement of Trp-triplet state2016

    • Author(s)
      Hironari Kamikubo
    • Organizer
      The 9th Korea-Japan Seminars on Biomolecular Sciences
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Rhodobacter capsulatus PYP の複合体形成に伴う構造変化 Complex induced structural changes of Rhodobacter capsulatus Photoactive Yellow Protein2016

    • Author(s)
      Yoichi Yamazaki, Yohei Shibata, Hironari Kamikubo
    • Organizer
      第54回日本生物物理学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] Rc-PYP の光依存的に形成する複数種の複合体解析 Analysis of light dependent multiple complex formation of Rc-PYP2016

    • Author(s)
      Yohei Shibata, Yoichi Yamazaki, Keito Yoshida, Shoki Nakata, Hironari Kamikubo
    • Organizer
      第54回日本生物物理学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] キメラカルシトニンによるヒトカルシトニンアミロイド凝集阻害機構の解明 Analysis of amyloid formation and inhibition mechanisms of human calcitonin by chimera calcitonin2016

    • Author(s)
      Chiaki Ota, Hiroko Tanaka, Tomoyasu Aizawa, Yoichi Yamazaki, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      第54回日本生物物理学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] 滴定X 線溶液散乱測定を用いたアダプター蛋白質GGA-ユビキチン相互作用の解析 An analysis of the interaction of GGA with ubiquitin by using titration SAXS measurement2016

    • Author(s)
      Yugo Hayashi, Miho Shinohara, Keito Yoshida, Yoichi Yamazaki, Kazuhisa Nakayama, Soichi Wakatsuki, Hironari Kamikubo
    • Organizer
      第54回日本生物物理学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] X 線小角散乱法を用いた神経軸索伸長系関連蛋白質shootin1 の動的な構造変化の解析 Structural alteration of shootin1 upon phosphorylation revealed by using small angle x-ray scattering2016

    • Author(s)
      Shoki Nakata, Keito Yoshida, Kentarou Baba, Yohei Shibata, Yoichi Yamazaki, Naoyuki Inagaki, Hironari Kamikubo
    • Organizer
      第54回日本生物物理学会年会
    • Related Report
      2016 Annual Research Report
  • [Presentation] Exploring regulatory association and dissociation processes of biological molecules constituting a functional module2016

    • Author(s)
      Yohei Shibata, Yoichi Yamazaki, Keito Yoshida, Shoki Nakata, Hironari Kamikubo
    • Organizer
      The 5th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural change of shootin1 upon phosphorylation revealed by using small angle x-ray scattering2016

    • Author(s)
      Shoki Nakata, Yugo Hayashi, Kentarou Baba, Keito Yoshida, Yohei Shibata, Yoichi Yamazaki, Naoyuki Inagaki, Hironari Kamikubo
    • Organizer
      The 5th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin by chimera calcitonin2016

    • Author(s)
      Chiaki Ota, Yasumichi Yakase, Kentaro Ishii, Tomoyasu Aizawa, Yoichi Yamazaki, Mikio Kataoka, Susumu Uchiyama, Hironari Kamikubo
    • Organizer
      The 5th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] An analysis of the interaction of gga with ubiquitin by using titration saxs measurement2016

    • Author(s)
      Endo Natsumi, Yugo Hayashi, Miho Shinohara, Keito Yoshida, Yoichi Yamazaki, Hironari Kamikubo
    • Organizer
      The 5th International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Related Report
      2016 Annual Research Report
  • [Presentation] Structural Exploring Multi-component Equilibrium in Biological Systems by using Continuous Titration SAXS2016

    • Author(s)
      Hironari Kamikubo
    • Organizer
      第78回岡崎コンファレンス Grand Challenges in Small-angle Scattering
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Mechanism of amyloid formation of human calcitonin2015

    • Author(s)
      Mikio Kataoka, Hironari Kamikubo
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2015-12-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Picosecond photobiology: Watching a signaling protein function in real time via 150-picosecond time-resolved X-ray diffraction and solution scattering2015

    • Author(s)
      Philip Anfinrud, Friedrich Schotte, Hyun Sun Cho, John Kyndt, Hironari Kamikubo, Mikio Kataoka
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Femtosecond time-resolved impulsive stimulated Raman study of the primary process of photoactive yellow protein2015

    • Author(s)
      Hikaru Kuramochi, Satoshi Takeuchi, Kento Yonezawa, Hironari Kamikubo, Mikio Kataoka, Tahei Tahara
    • Organizer
      The International Chemical Congress of Pacific Basin Societies 2015
    • Place of Presentation
      Honolulu, USA
    • Year and Date
      2015-12-15
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Exploring regulatory association and dissociation processes of biological molecules constituting a functional module2015

    • Author(s)
      Hironari Kamikubo
    • Organizer
      The 4rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      西新プラザ(福岡県福岡市)
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Structural investigation of direct interaction between Shootin1 and cortactin by the titration SAXS measurements2015

    • Author(s)
      J. Makino, K. Yoshida, Y. Kubo, K. Baba, Y. Yamazaki, N. Inagaki, M. Kataoka, H. Kamikubo
    • Organizer
      The 4rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      西新プラザ(福岡県福岡市)
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2015

    • Author(s)
      C. Ota, H. Tanaka, T. Aizawa, Y. Yamazaki, M. Kataoka, H. Kamikubo
    • Organizer
      The 4rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      西新プラザ(福岡県福岡市)
    • Year and Date
      2015-11-22
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] BioSAX論文投稿規定に関して2015

    • Author(s)
      上久保裕生
    • Organizer
      第3回タンパク質X線溶液散乱講習会
    • Place of Presentation
      高エネルギー加速器研究機構 物質構造科学研究所(茨城県つくば市)
    • Year and Date
      2015-11-19
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 水-蛋白質界面の電荷状態と蛋白質内部で生じる化学反応2015

    • Author(s)
      上久保裕生
    • Organizer
      第64回高分子討論会
    • Place of Presentation
      東北大学川内キャンパス(宮城県仙台市)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Effects of chromophores of PYP - Phytochrome Related Protein on the structure2015

    • Author(s)
      Keito Yoshida, Kento Yonezawa, Yoichi Yamazaki, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Interaction/Structure analysis of GGA-Ubiquitin complex by using titration SAXS Measurement2015

    • Author(s)
      Miho Shinohara, Hironari Kamikubo, Keito Yoshida, Yoichi Yamazaki, Kazuhisa Nakayama, Soichi Wakatsuki, Mikio Kataoka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structural characterization of a denaturant denatured state2015

    • Author(s)
      Hironari Kamikubo
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Analysis of interaction sites on &beta;-scaffold region of Rhodobacter capsulatus Photoactive Yellow Protein2015

    • Author(s)
      Yoichi Yamazaki, Atsuhiro Kawamura, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Protein2015

    • Author(s)
      Kento Yonezawa, Hironari Kamikubo, Yusuke Kanematsu, Yoichi Yamazaki, Masanori Tachikawa, Mikio Kataoka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Intramolecular interaction as a determination factor for structure elements of proteins2015

    • Author(s)
      Yuji Konno, Takeshi Inagaki, Hironari Kamikubo, Mikio Kataoka
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
  • [Presentation] Structural investigation of direct interaction between Shootin1 and cortactin by the titration SAXS measurements2015

    • Author(s)
      Junko Makino, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka, Keito Yoshida, Naoyuki Inagaki, Yusuke Kubo, Kentarou Baba
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] The role of N-terminal region of PYP binding protein at the formation of complex with Rc-PYP2015

    • Author(s)
      Tomoyuki Yasumuro, Yoichi Yamazaki, Mikio Kataoka, Hironari Kamikubo
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学(石川県金沢市)
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
  • [Presentation] 滴定溶液散乱測定用自動サンプリングシステムの開発と応用 Development of auto-sampling system designed for titration-SAXS and its applications.2015

    • Author(s)
      上久保裕生、岡部龍二、吉田佳人、山崎洋一
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      あわぎんホール(徳島県徳島市)
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] Designing an Artificial Protein by Using a Kind of Building Blocks Responsible for Structure and Function2015

    • Author(s)
      Hironari Kamikubo
    • Organizer
      IMS Asian International Symposium
    • Place of Presentation
      分子科学研究所(愛知県岡崎市)
    • Year and Date
      2015-06-12
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] X線溶液散乱測定用AUTO-SAMPLING装置の開発と応用2015

    • Author(s)
      上久保裕生
    • Organizer
      第3回物構研サイエンスフェスタ
    • Place of Presentation
      つくば国際会議場(茨城県つくば市)
    • Year and Date
      2015-03-17 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] Exploring regulatory association and dissociation processes of biological molecules constituting a functional module2015

    • Author(s)
      H. Kamikubo, M.Kataoka
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Ptotein2015

    • Author(s)
      K. Yonezawa, H. Kamikubo, K. Yoshida, Y. Yamazaki, M. Kataoka
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Relationship of the photoreactions of two sensor domains in PYP-Phytochrome Related Protein2015

    • Author(s)
      Y. Keito, H. Kamikubo, K. Yonezawa, Y. Yamazaki, M. Kataoka
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2015

    • Author(s)
      H. Tanaka, H. Kamikubo, Y. Yamazaki, M. Kataoka
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] The elucidation of the relationship between b4-5 loop region and the chromophore environment in PYPs2015

    • Author(s)
      A. Kawamura, Y. Yamazaki, H. Kamikubo, M. Kataoka
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] Characterization of the denatured structure of staphylococcal nuclease by tryptophan triplet state lifetime measurements2015

    • Author(s)
      S. Aoyagi, M. Yamaguchi, H. Kamikubo, Y. Yamazaki, M. Kataoka
    • Organizer
      The 3rd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      合歓の郷(三重県志摩市)
    • Year and Date
      2015-01-10 – 2015-01-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 溶液散乱の出版ガイドラインについて2014

    • Author(s)
      上久保裕生
    • Organizer
      分子システム研究における溶液散乱
    • Place of Presentation
      分子科学研究所(愛知県岡崎市)
    • Year and Date
      2014-12-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Molecular actions in the light sensor protein, Photoactive Yellow Protein2014

    • Author(s)
      H. Kamikubo
    • Organizer
      The 7th Korea-Japan Seminars on Biomolecular Sciences: Experiments and Simulations
    • Place of Presentation
      Seoul (Korea)
    • Year and Date
      2014-11-26 – 2014-11-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Analysis for different property of light induced structural changes between two PYPs2014

    • Author(s)
      Y. Yamazaki, Y. Matsumoto, H. Kamikubo, M. Kataoka
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structural change in Arginine 52 of photoactive yellow protein during the photoreaction2014

    • Author(s)
      K. Yonezawa, H. Kamikubo, K. Yoshida, Y. Yamazaki, M. Kataoka
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] Light-induced structural change of PYP-phytochrome related protein2014

    • Author(s)
      K. Yoshida, H. Kamikubo, K. Yonezawa, Y. Yamazaki, M. Kataoka
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] The elucidation of the relationship between β4-5 loop region and the chromophore environment in PYPs2014

    • Author(s)
      A. Kawamura, Y. Yamazaki, H. Kamikubo, M. Kataoka
    • Organizer
      16th International Conference on Retinal Proteins
    • Place of Presentation
      長浜ロイヤルホテル(滋賀県長浜市)
    • Year and Date
      2014-10-05 – 2014-10-10
    • Related Report
      2014 Annual Research Report
  • [Presentation] 機能性を生み出す複雑系分子システムの動作機構と構築2014

    • Author(s)
      上久保裕生
    • Organizer
      第270回 光ナノサイエンス特別講義
    • Place of Presentation
      奈良先端科学技術大学院大学(奈良県生駒市)
    • Year and Date
      2014-10-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] Photoactive Yellow Proteinにおけるアルギニン52のプロトン化状態2014

    • Author(s)
      米澤健人, 上久保裕生, 吉田桂人, 山崎洋一, 片岡幹雄
    • Organizer
      第1回「動的秩序と機能」若手研究会
    • Place of Presentation
      ラフォーレ蔵王(宮城県刈田郡蔵王町)
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] トリプトファン三重項寿命を用いたStaphylococcal nucleaseの変性構造の評価2014

    • Author(s)
      青柳貞利, 山口真理子, 上久保裕生, 山崎洋一, 片岡幹雄
    • Organizer
      第1回「動的秩序と機能」若手研究会
    • Place of Presentation
      ラフォーレ蔵王(宮城県刈田郡蔵王町)
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] マイクロ流路を用いたX線溶液散乱測定サンプルチェンジャーの開発2014

    • Author(s)
      岡部龍二, 上久保裕生, 山崎洋一, 片岡幹雄
    • Organizer
      第1回「動的秩序と機能」若手研究会
    • Place of Presentation
      ラフォーレ蔵王(宮城県刈田郡蔵王町)
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Annual Research Report
  • [Presentation] Molecular actions of the light sensor protein, Photoactive Yellow Protein, as a prototype for sensor proteins2014

    • Author(s)
      Hironari Kamikubo
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis for different property of light induced structural changes between two PYPs2014

    • Author(s)
      Yoichi Yamazaki, Yoshiaki Matsumoto, Hironari Kamikubo, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Protein2014

    • Author(s)
      Kento Yonezawa, Hironari Kamikubo, Keito Yoshida, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Relationship of the photoreactions between two sensor domains in PYP-Phytochrome Related Protein2014

    • Author(s)
      Keito Yoshida, Hironari Kamikubo, Kento Yonezawa, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Development of a microfluidics-based auto-sample changer for solution X-ray scattering2014

    • Author(s)
      Ryuji Okabe, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Analysis of amyloid formation and inhibition mechanisms of human calcitonin2014

    • Author(s)
      Hiroko Tanaka, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Characterization of the denatured structure of staphylococcal nuclease by tryptophan triplet state lifetime measurements2014

    • Author(s)
      Sadatoshi Aoyagi, Mariko Yamaguchi, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] The elucidation of the relationship between β4-5 loop region and the chromophore environment in PYPs2014

    • Author(s)
      Atuhiro Kawamura, Yoichi Yamazaki, Hironari Kamikubo, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Acid induced proton transfer in Photoactive Yellow Protein2014

    • Author(s)
      Masayoshi Noji, Mai Arakawa, Hironari Kamikubo, Yoichi Yamazaki, Mikio Kataoka
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌コンベションセンター(北海道札幌市)
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] The potential uses of structure and function elements2014

    • Author(s)
      Hironari Kamikubo, Mikio Kataoka
    • Organizer
      The 14th KIAS Conference on Protein Structure and Function
    • Place of Presentation
      Seoul (Korea)
    • Year and Date
      2014-09-17 – 2014-09-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 演習「タンパク質の形を見てみよう」講義「光散乱・小角散乱に関する基礎」「X線溶液散乱デモデータの処理」2014

    • Author(s)
      上久保裕生
    • Organizer
      「第8回大学生のための素粒子・原子核、物質・生命スクール」サマーチャレンジ2014
    • Place of Presentation
      高エネルギー加速器研究機構(茨城県つくば市)
    • Year and Date
      2014-08-23 – 2014-08-24
    • Related Report
      2014 Annual Research Report
  • [Presentation] 機能を生み出す単位生体分子集団(機能モジュール)の動的秩序の探査2014

    • Author(s)
      上久保裕生
    • Organizer
      新学術領域研究「動的秩序と機能」班会議
    • Place of Presentation
      粟津温泉 おびし荘(石川県小松市)
    • Year and Date
      2014-08-04 – 2014-08-07
    • Related Report
      2014 Annual Research Report
  • [Presentation] 弱い相互作用で関連づけられたタンパク質分子集団の特性と制御2014

    • Author(s)
      上久保裕生
    • Organizer
      東京理科大学総合研究機構「分子連関相乗系研究部門」セミナー
    • Place of Presentation
      東京理科大学(東京都新宿区)
    • Year and Date
      2014-07-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] マルチドメイン蛋白質におけるドメイン再配置と結合調整/Domain rearrangement of a multi-domain protein regulates the association and dissociation of its interaction partners2014

    • Author(s)
      上久保裕生
    • Organizer
      第14 回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(神奈川県横浜市)
    • Year and Date
      2014-06-18 – 2014-06-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] Rhodobacter capsulatus PYP結晶構造に見られる活性中間体様構造の解析/Crystal structural analysis for active-state like structure of Rhodobacter capsulatus PYP2014

    • Author(s)
      山崎洋一、松本寛史、上久保裕生、片岡幹雄
    • Organizer
      第14 回日本蛋白質科学会年会
    • Place of Presentation
      ワークピア横浜(神奈川県横浜市)
    • Year and Date
      2014-06-18 – 2014-06-22
    • Related Report
      2014 Annual Research Report
  • [Presentation] 共役した蛋白質分子内プロトン移動反応の実験的検証2014

    • Author(s)
      上久保裕生
    • Organizer
      第47 回量子物理化学セミナー兼理数GP セミナー
    • Place of Presentation
      横浜市立大(神奈川県横浜市)
    • Year and Date
      2014-06-04
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] BioSAXS論文投稿規定に関して2014

    • Author(s)
      上久保裕生
    • Organizer
      第2回タンパク質X線溶液散乱講習会
    • Place of Presentation
      高エネルギー加速器研究機構 物質構造科学研究所(茨城県つくば市)
    • Year and Date
      2014-06-03
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Exploring regulatory association and dissociation processes of biological molecules constituting a functional module2014

    • Author(s)
      Hironari Kamikubo
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Interaction sites analysis for the photoactive yellow protein of Rhodobacter capsulatus2014

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Local disordered structure of staphylococcal nuclease studied by tryptophan triplet state lifetime measurement2014

    • Author(s)
      Mariko Yamaguchi
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Loop dynamics of staphylococcal nuclease in microsecond timescale2014

    • Author(s)
      Takahiro Matsumoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Local flexibility around tryptophan140 and its relationship to non-local interaction in disordered staphylococcal nuclease2014

    • Author(s)
      Toshiyuki Minemura
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Extraction of function elements from green fluorescent protein2014

    • Author(s)
      Toshio Morimoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation state of R52 at the pypm intermediate state2014

    • Author(s)
      Masayoshi Noji
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray crystal structure analysis of the Photoactive Yellow Protein of Rhodobacter capsulatus2014

    • Author(s)
      Hiroshi Matsumoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of Equilibrium of intermediate states of PYP by use of chimera proteins2014

    • Author(s)
      Yoshiaki Matsumoto
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Statistical characteristics of unfolded staphylococcal nuclease studied2014

    • Author(s)
      Emi Ohta
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Roles of functional elements transplanted into the artificial enzyme2014

    • Author(s)
      Mai Arakawa
    • Organizer
      The 2nd International Symposium on Dynamical Ordering of Biomolecular Systems for Creation of Integrated Functions
    • Place of Presentation
      キャンパスプラザ京都、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 溶液散乱を用いた多成分平衡系における構造解析2014

    • Author(s)
      上久保裕生
    • Organizer
      Spring-8ワークショップ「Spring-8とユーザーのさらなる連携をめざして」
    • Place of Presentation
      理化学研究所播磨事業所、兵庫県、佐用町
    • Related Report
      2013 Annual Research Report
  • [Presentation] X線溶液散乱法を用いたタンパク質構造の解析2013

    • Author(s)
      上久保裕生
    • Organizer
      分子・物質合成プラットフォーム技術研修会-先端施設の利用機会と高度な技術支援の提供-
    • Place of Presentation
      ホテル京阪 京都、京都府京都市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Excited-state proton transfer in fluorescent Photoactive Yellow Protein containing 7-hydroxycoumarin2013

    • Author(s)
      Dian Novitasari
    • Organizer
      International Conference on Advanced Materials Science and Technology 2013
    • Place of Presentation
      University Gadjah Mada,Yogyakarta, Indonesia
    • Related Report
      2013 Annual Research Report
  • [Presentation] トリプトファン三重項寿命を用いたStaphylococcal nucleaseの主鎖の運動性評価2013

    • Author(s)
      松本昇紘
    • Organizer
      日本物理学会 2013年秋季大会
    • Place of Presentation
      徳島大学、常三島キャンパス徳島県徳島市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Time-resolved Laue crystallography of photoactive yellow protein with 150psec time resolution2013

    • Author(s)
      Mikio Kataoka
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Domain-Swapped Oligomerization and Molten Globule State of Cytochrome c2013

    • Author(s)
      Megha Deshpande
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of interaction sites on the Photoactive Yellow Protein of Rhodobacter capsulatus2013

    • Author(s)
      Yoichi Yamazaki
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] The role of the flexible loop in Staphylococcal nuclease on its catalytic activity2013

    • Author(s)
      Rumi Shiba
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Exited State Proton Transfer of Fluorescent Photoactive Yellow Protein Reconstituted with Hydroxycoumarin2013

    • Author(s)
      Dian Novitasari
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation State of Arginine 52 in Photoactive Yellow Protein2013

    • Author(s)
      Kento Yonezawa
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray Solution Scattering Studies of PYP-Phytochrome Related Protein2013

    • Author(s)
      Keito Yoshida
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of unfolded structure of Staphylococcal nuclease mutants by using FRET2013

    • Author(s)
      Emi Ohta
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Main-chain dynamics of staphylococcal nuclease in microsecond timescale2013

    • Author(s)
      Takahiro Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Local flexibility of denatured structure and its relationship to non-local interaction in staphylococcal nuclease2013

    • Author(s)
      Toshiyuki Minemura
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Extraction of Function Elements from Green Fluorescent Protein2013

    • Author(s)
      Toshio Morimoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Roles of functional elements transplanted into the artificial enzyme2013

    • Author(s)
      Mai Arakawa
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] X-ray crystal structure analysis of the Photoactive Yellow Protein of Rhodobacter capsulatus2013

    • Author(s)
      Hiroshi Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Analysis of equilibrium of intermediate states of PYP by use of chimera proteins2013

    • Author(s)
      Yoshiaki Matsumoto
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Protonation state of R52 at the PYPM intermediate state2013

    • Author(s)
      Masayoshi Noji
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      国立京都国際会館、京都府京都市
    • Related Report
      2013 Annual Research Report
  • [Presentation] Functional modification of a protein by using element implantation2013

    • Author(s)
      Hironari Kamikubo
    • Organizer
      Sixth Korea-Japan Seminars on Biomdecular Sciences; Experiments and Simulations
    • Place of Presentation
      岡崎コンファレンスセンタ-、愛知県岡崎市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 光センサー蛋白質の局所状態変化と全体構造変化

    • Author(s)
      上久保裕生
    • Organizer
      第3回CIMoSセミナー
    • Place of Presentation
      分子科学研究所協奏分子システム研究センター、愛知県岡崎市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 光センサー蛋白質からみた階層間の連続性

    • Author(s)
      上久保裕生
    • Organizer
      国際高等研究所研究プロジェクト「分子基盤に基づく生体機能への揺らぎとダイナミックネットワークの解明」2013年度第2回研究会プログラム
    • Place of Presentation
      国際高等研究所、京都府木津川市
    • Related Report
      2013 Annual Research Report
  • [Presentation] 折り畳み機構を踏まえた蛋白質分子設計方の開発

    • Author(s)
      上久保裕生
    • Organizer
      NAIST未来開発コロキウム-明日をつくる分子・人材ネットワーク
    • Place of Presentation
      奈良先端科学技術大学院大学 物質創成科学研究科、奈良県生駒市
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 機能を生み出す単位生体分子集団

    • Author(s)
      上久保裕生
    • Organizer
      生命システムにおける動的秩序形成と高次機能発現 第1回公開シンポジウム
    • Place of Presentation
      岡崎コンファレンスセンタ-、愛知県岡崎市
    • Related Report
      2013 Annual Research Report
    • Invited

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Published: 2013-07-10   Modified: 2022-02-22  

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