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Functional analysis of noncoding RNAs in nervous systems

Planned Research

Project AreaNeo-taxonomy of noncoding RNAs
Project/Area Number 26113006
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKobe University

Principal Investigator

Kageyama Yuji  神戸大学, バイオシグナル総合研究センター, 准教授 (90335480)

Research Collaborator Inagaki Sachi  
Nakamura Natsuki  
Yoshida Yuki  
Hamada Yuki  
Yamabe Takuya  
Nakano Miyuki  
Taira Yuki  
Project Period (FY) 2014-07-10 – 2019-03-31
Project Status Completed (Fiscal Year 2018)
Budget Amount *help
¥102,050,000 (Direct Cost: ¥78,500,000、Indirect Cost: ¥23,550,000)
Fiscal Year 2018: ¥20,800,000 (Direct Cost: ¥16,000,000、Indirect Cost: ¥4,800,000)
Fiscal Year 2017: ¥20,670,000 (Direct Cost: ¥15,900,000、Indirect Cost: ¥4,770,000)
Fiscal Year 2016: ¥20,410,000 (Direct Cost: ¥15,700,000、Indirect Cost: ¥4,710,000)
Fiscal Year 2015: ¥20,280,000 (Direct Cost: ¥15,600,000、Indirect Cost: ¥4,680,000)
Fiscal Year 2014: ¥19,890,000 (Direct Cost: ¥15,300,000、Indirect Cost: ¥4,590,000)
KeywordsノンコーディングRNA / ショウジョウバエ / 中枢神経系 / 軸索誘導 / PRC複合体 / lncRNA / 遺伝子発現制御 / 神経発生 / 長鎖ノンコーディングRNA / 突然変異 / 分子遺伝学 / 軸索走行 / 発生生物学 / キノコ体 / エピジェネティックな遺伝子発現制御 / noncoding RNA / incRNA / RNAネオタクソノミ
Outline of Final Research Achievements

Transcriptome studies in eukaryotes have uncovered a large number of long noncoding RNAs (lncRNAs) in their genomes. Physiological and biochemical roles of these lncRNAs are enigmatic, and thereby comprehensive understandings of lncRNA function is far away from the goal. In current study, we chose Drosophila Lobe-less (LOL) RNA as a model, which is specifically expressed in proliferating neuroblasts during embryogenesis. Using various nerve cell specific cell markers, we found that the lol gene is essential for axon guidance of mushroom body neurons. Transcriptome analysis with a high-throughput sequencer showed that lol regulates many genes including neurogenesis- and axon-guidance specific genes in. We also found lol genetically interacts with Polycomb Group (Pc-G) genes, suggesting that lol functions as chromatin modifiers, consistent with its nuclear localization.

Academic Significance and Societal Importance of the Research Achievements

Lobe-less(LOL)RNAはショウジョウバエの中枢神経系に発現する長鎖ノンコーディングRNAであり、LOL RNAを欠損した変異体では、行動や記憶を司る脳内中枢であるキノコ体の部分欠損が起こることが知られている。本研究ではlol変異体の詳細な解析を行い、lol変異体の表現型がキノコ体神経細胞の軸索誘導の異常に起因するものであること、実際にlol変異体では多数の軸索誘導関連遺伝子の発現に異常が見られることを示した。これらの結果は、LOL RNAのみならず、多数見つかっている他の神経系特異的長鎖ノンコーディングRNAもまた神経発生において重要な機能を担っていることを示唆するものである。

Report

(6 results)
  • 2018 Annual Research Report   Final Research Report ( PDF )
  • 2017 Annual Research Report
  • 2016 Annual Research Report
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (22 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (2 results) Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 3 results) Presentation (15 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Int'l Joint Research] Northwestern University(米国)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] Northwestern University(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] Shavenbaby and Yorkie mediate Hippo signaling to protect adult stem cells from apoptosis2018

    • Author(s)
      Jerome Bohere, Alexandra Mancheno-Ferris, Sandy Al Hayek, Jennifer Zanet, Philippe Valenti, Kohsuke Akino, Yuya Yamabe, Sachi Inagaki, Helene Chanut-Delalande, Serge Plaza, Yuji Kageyama, Dani Osman, Cedric Polesello, Francois Payre
    • Journal Title

      Nat. Commun.

      Volume: 9 Issue: 1 Pages: 5123-5123

    • DOI

      10.1038/s41467-018-07569-0

    • Related Report
      2018 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] ショウジョウバエroX RNA -ヒストン修飾酵素複合体と相互作用するRNAの発見2015

    • Author(s)
      影山裕二
    • Journal Title

      実験医学増刊

      Volume: 33 Pages: 3274-3275

    • Related Report
      2015 Annual Research Report
  • [Journal Article] 小さなペプチドの発見から学ぶこと2015

    • Author(s)
      稲垣幸、影山裕二
    • Journal Title

      実験医学増刊

      Volume: 33 Pages: 3306-3307

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Pri peptides are mediators of ecdysone for the temporal control of development2014

    • Author(s)
      H. Chanut-Delalande, Y. Hashimoto, A. Pelissier-Monier, R. Spokony, A. Dib, T. Kondo, J. Bohere, K. Niimi, Y. Latapie, S. Inagaki, L. Dubois, P. Valenti, C. Polesello, S. Kobayashi, B. Moussian, K. White, S. Plaza, Y. Kageyama, and F. Payre
    • Journal Title

      Nature Cell Biol.

      Volume: 16 Issue: 11 Pages: 1035-1044

    • DOI

      10.1038/ncb3052

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear lncRNAs as epigenetic regulators-beyond skepticism.2014

    • Author(s)
      Nakagawa, S., Kageyama, Y.
    • Journal Title

      Biochim. Biophys. Acta.

      Volume: 1839 Issue: 3 Pages: 215-222

    • DOI

      10.1016/j.bbagrm.2013.10.009

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Presentation] Lobe-less RNAはショウジョウバエの胚発生期において軸索走行制御に寄与する長鎖ノンコーディングRNAである2018

    • Author(s)
      稲垣幸、中村奈月、佐藤昌直、門田光隆、Sean D. Keeley、工樂樹洋、影山裕二
    • Organizer
      第20回日本RNA学会年会
    • Related Report
      2018 Annual Research Report
  • [Presentation] Lobe-less, a long noncoding RNA that regulates Drosophila mushroom body morphogenesis.2017

    • Author(s)
      Sachi Inagaki, Natsuki Nakamura, Masanao Sato, Mitsuhiro Kadota, Sean D. Keeley, Shigehiro Kuraku and Yuji Kageyama1
    • Organizer
      The 22nd Annual Meeting of the RNA society
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ショウジョウバエLobe-less RNAはキノコ体において軸索走行制御因子の発現を制御している2017

    • Author(s)
      稲垣幸、中野美幸、中村奈月、門田光隆、Sean D. Keeley、佐藤昌直、工樂 樹洋、影山裕二
    • Organizer
      第19回RNA学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Lobe-less RNAは、胚発生期において神経母細胞に発現し、軸索走行制御を介した神経回路形成に寄与している2017

    • Author(s)
      稲垣幸、門田光隆、Sean D. Keeley、工樂樹洋、影山裕二
    • Organizer
      第40回日本分子生物学会年会
    • Related Report
      2017 Annual Research Report
  • [Presentation] Screening for modifier genes of polished rice gain-of-function phenotypes:Results of second and third chromosomes.2016

    • Author(s)
      Yuya Yamabe, Yuki Hamada, Kosuke Akino, Yuki Yoshida, Sachi Inagaki, Yuji Kageyama
    • Organizer
      第12回日本ショウジョウバエ研究会
    • Place of Presentation
      東京
    • Year and Date
      2016-09-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] polished rice is essential for tip cell specification and tubular fusion of tracheal dorsal branch2016

    • Author(s)
      Yuki Taira, Housei Wada, Shigeo Hayashi, Yuji Kageyama
    • Organizer
      第12回日本ショウジョウバエ研究会
    • Place of Presentation
      東京
    • Year and Date
      2016-09-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] Lobe-less RNA is necessary for establishment of neural circuits in Drosophila mushroom body2016

    • Author(s)
      Miyuki Nakano, Sachi Inagaki, Natsuki Nakamura and Yuji Kageyama
    • Organizer
      第12回日本ショウジョウバエ研究会
    • Place of Presentation
      東京
    • Year and Date
      2016-09-09
    • Related Report
      2016 Annual Research Report
  • [Presentation] Lobe-less RNA regulates axon guidance of mushroom body neurons in Drosophila and genetically interacts with PRC1 components2016

    • Author(s)
      Sachi Inagaki, Natsuki Nakamura, Masanao Sato, Yuji kageyama
    • Organizer
      21st Annual Conference of the RNA Society
    • Place of Presentation
      京都
    • Year and Date
      2016-06-28
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ゲノムの舞台袖に控える役者たち:ノンコーディングRNAとマイクロペプチド2015

    • Author(s)
      影山裕二
    • Organizer
      第23回山形分子生物学セミナー
    • Place of Presentation
      山形
    • Year and Date
      2015-12-21
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 影山裕二、稲垣幸2015

    • Author(s)
      脳内神経回路形成と長鎖noncoding RNA:ショウジョウバエのキノコ体形成におけるLobe-less RNAの役割
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 長鎖noncoding RNA Lobe-lessはショウジョウバエ中枢神経系においてキノコ体の軸索投射及び脳内回路形成に寄与している2015

    • Author(s)
      稲垣 幸、中村 奈月、影山 裕二
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] coding vs noncoding2015

    • Author(s)
      影山裕二
    • Organizer
      第20回分生研シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2015-10-28
    • Related Report
      2015 Annual Research Report
  • [Presentation] Lobe-less RNA はショウジョウバエキノコ体の軸索走行制御を介して神経回路形成に寄与している2015

    • Author(s)
      稲垣幸、中村奈月、影山裕二
    • Organizer
      第17回RNA学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2015-07-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] 長鎖ノンコーディングRNA の神経系における機能:ショウジョウバエlobe-less 変異体の細胞学的解析2014

    • Author(s)
      中村奈月、稲垣幸、影山裕二
    • Organizer
      日本RNA学会
    • Place of Presentation
      名古屋
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] Lobe-less RNAはポリコーム複合体と相互作用し、ショウジョウバエにおけるキノコ体の形態形成を制御している2014

    • Author(s)
      稲垣幸、佐藤昌直、中村奈月、小林悟、影山裕二
    • Organizer
      日本RNA学会
    • Place of Presentation
      名古屋
    • Year and Date
      2014-07-23 – 2014-07-25
    • Related Report
      2014 Annual Research Report

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Published: 2014-11-20   Modified: 2022-02-28  

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