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Biosynthetic Mechanism of Unique Lipids Constituting Archaebacterial Cell-Membrane

Research Project

Project/Area Number 01470027
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 天然物有機化学
Research InstitutionTokyo Institute of Technology

Principal Investigator

KAKINUMA Katsumi  Tokyo INST. Tech., FAC. Science, Professor, 理学部, 教授 (90092543)

Project Period (FY) 1989 – 1991
Project Status Completed (Fiscal Year 1991)
Budget Amount *help
¥8,000,000 (Direct Cost: ¥8,000,000)
Fiscal Year 1991: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1990: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 1989: ¥4,500,000 (Direct Cost: ¥4,500,000)
KeywordsHalobacterium halobium / sn-2, 3-di-OMICRON-Phytanyl Giycerol / Archaebacteria / Sulfolobus acidocaldarius / Biosynthesis / Chiral Deuterium Labeling / Triose-phosphate Isomerase / Cheirally Monodeuterated Glycerol / 好酸好熱菌 / エ-テル型膜脂質 / 重水素化グリセロ-ル / 糖代謝 / ホスホリピド / グリセロ-ル代謝 / グリセロ-ル-1-リン酸
Research Abstract

Evolutionary intriguing archaebacteria contain 2, 3-di-OMICRON-polyisopranyl glycerol structures as core membrane lipids, which may be regarded as mirror images to the lipids of the eubacterial and eukaryotic cells. In this project, the biosynthetic mechanisms which afford such intriguing stereochemistry of the membrane lipids were studied by the stable isotope-tracer technique and NMR analysis.
1) The absolute stereochemistry of the glycerol moiety of core lipid in halophilic archaebacteria Halobacterium halobium was confirmed by combination of the enantiospecific synthesis of both 1, 2- and 2, 3-di-OMICRON-phytanyl glycerol from D-mannitol and close analysis of their 500MHz ^1H-NMR spectra.
2) The biosynthesis of 2, 3-Di-OMICRON-phytanyl glycerol in H. halobium has been elucidated for the first time from the stereochemical viewpoints. The core lipid appears to be biosynthesized from glycerol and D-glucose via reduction of dihydroxyacetone phosphate or its derivative, during which the s … More tereochemistry of C-2 is inverted. In the ether-bond formations, the C-2 and C-3 oxygen atoms of glycerol act as nucleophile. The plausible pathway of the biosynthesis was postulated.
3) A novel and convenient synthetic method of chirally monodeuterated glycerol was developed based on the chirality transcription concept using 1, 2 : 5, 6-di-OMICRON-iopropylidene-alpha-D-ribo-hexofuranos-3-urose as a template.
4) Stereochemistry of the archaebacterial triose-phosphate isomerase reaction was elucidated for the first time by chasing the deuterium of D-[5- ^2H]-and D-[4- ^2H]glucose during the core lipid biosynthesis in Halobacterium halobium, followed by 500 MHz ^1H-NMR comparison of the deuterated lipid and the synthetic sn-2, 3-di-OMICRON-phytanyl (3R) - and - (3S) -[3- ^2H_1]glycerol.
5) The finding that the diglyceryl tetraether lipid of thermoacidophilic archaebacteria Sulfolobus acidocaldarius is biosynthesized from glycerol without inversion of configuration at C-2 suggests a possibility of direct formation of glycerol-1-phosphate rather than glycerol-3-phosphate found in H. halobium. A diversified and contrasting biochemical transformation may be evolved within the archaebacterial species. Less

Report

(4 results)
  • 1991 Annual Research Report   Final Research Report Summary
  • 1990 Annual Research Report
  • 1989 Annual Research Report
  • Research Products

    (20 results)

All Other

All Publications (20 results)

  • [Publications] Masahiro Yamagishi: "Confirmation of the Absolute Stereochemistry of Sn-2,3-Di-O-phytanyl glycerol,the Unit Liped of the Cell Membrane of Halophilic Archaebacteria Halobacterium halobium" Agric.Biol.Chem.53. 867-686 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Katsumi Kakinuma: "The Stereochemical Fate of glycerol during the Biosynthesis of Memlrane Lipids in Thermoacidophilic Archaebacteria Sulfolobus acidocaldarius" J.Chem.Soc.Chem.Commun.925-927 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Katsumi Kakinuma: "Biosynthetic Mechanism of Sn-2,3-Di-O-phytanylglycerol,Core Membrane Lipid of the Archaebacterium Halobacterium halobium" J.Am.Chem.Soc.112. 2740-2745 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 柿沼 勝己: "古細菌エ-テル脂質の生合成" Cell Science. 6. 222-224 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Katsumi kakinuma: "Diacetone glucose Architecture as a Chirality Template.II.Versatile Synthon for the Chiral Deuterium labeling and Synthesis of All Diastereoisomers of Chirally Monodemterated glycerol" Tetrahedron.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Katsumi kakinuma: "Stereochemistry of the Triose-phosphate Isomerase Reaction in Archaebacteria Halobacterium halobium" J.Am.Chem.Soc.,.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] M. Yamagishi, K. Kakinuma: "Confirmation of the Absolute Stereochemistry of sn-2, 3-Di-OMICRON-Phytanyl Glycerol, The Unit Lipid of the Cell Membrane of Halophilic Archae-bacteria Halobacterium halobium" Agric. Biol. Chem.53. 867-868 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K. Kakinuma, M. Yamagishi, Y. Fujimoto, N. Ikekawa, T. Oshima: "Biosynthetic Mechanism of sn-2, 3-Di-OMICRON-Phytanyl Glycerol, Core Membrane Lipid of the Archaebacterium Halobacterium halobium" J. Am. Chem. Soc.112(7). 2740-2745 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K. Kakinuma, Y. Obata, T. Matsuzawa, T. Uzawa, T. Oshima: "The Stereochemical Fate of Glycerol during the Biosynthesis of Membrane Lipids in Thermoacidophilic Archaebacteria Sulfolobus acidocaldarius" J. Chem. Soc., Chem. Commun.1990(13). 925-927

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K. Kakinuma, Y. Obata: "Biosynthesis of Archaebacterial Ether Lipids" Cell Science. 6(3). 222-224 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K. Kakinuma, Y. Iihama, I. Takagi, K. Ozawa, N. Yamauchi, N. Imamura, Y. Esumi, M. Uramoto: "Diacetone Glucose Architecture as a Chirality Template II. Versatile Synthon for the Chiral Deuterium Labeling and Synthesis of All Diastereoisomers of Chirally Monodeuterated Glycerol" Tetrahedron.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K. Kakinuma, I. Takagi, T. Eguchi: "Stereochemistry of the Triose-phosphate Isomerase Reaction in Archae-bacteria Halobacterium halobium." J. Am. Chem. Soc.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Katsumi Kakinuma: "Diacetone Glucose Architecture as a Chirolity Template II.Versatile Synthon for the Chinal Deuterium habeling and synthesis of All Diastereoisomers of Chirally Monodeuterates Glycerol" Tetrahedron.

    • Related Report
      1991 Annual Research Report
  • [Publications] Katsumi Kakinuma: "Stereochemistry of the trioseーphosphate Isomerase Reaction in Archaebacteria Halobacterium halobium" J.Am.Chem.Soc,.

    • Related Report
      1991 Annual Research Report
  • [Publications] Katsumi Kakinuma: "Biosynthetic Mechanism of <sn>___ーー2,3ーDiーO__ーーPhytanyl Glycerol,Core Membrane Lipid of Archaebacterium Halobacterium halobium" J.Amer.Chem.Soc.,. 112. 2740-2745 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Katsumi Kakinuma: "The Stereochemical Fate of Glycerol during the Biosyntlesis of Membrane Lipids in Thermoacidophilic Archaebacteria Sulfolobus acidocaldarius" J.Chem.Soc.Chem.Commun.,. 925-927 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Katsumi Kakinuma: "Diacetone Glucose Architecture as a Chirality Template.Synthesis of Glycerol Isotopomers with Chiral Deuterium Labeling"

    • Related Report
      1990 Annual Research Report
  • [Publications] Masahiro Yamagishi: "Confirmation of the Absolute Stereochemistry of sn-2,3-Di-0-Phytanyl Glycerol,The Unit Lipid of the Cell Membrane of Halophilic Archaebacteria Halobacterium halobium" Agric.Biol.Chem.,. 53. 867-868 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] Katsumi Kakinuma: "Biosynthetic Mechanism of sn-2,3-Di-0-Phytanylglycerol,Core Membrane Lipid of the Archaebacterium Halobacterium halobium" J.Am.Chem.Soc.,. 112. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] Katsumi Kakinuma: "The Stereochemical Fate of Glycerol during the Biosynthesis of Membrane Lipids in Thermoacidophilic Archaebacteria Sulfolobus acidocaldarius" J.Chem.Soc.Chem.Commun.,. (1990)

    • Related Report
      1989 Annual Research Report

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Published: 1989-04-01   Modified: 2016-04-21  

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