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Analysis of the Structural Elements Required for Highly Efficient Catalysis

Research Project

Project/Area Number 01470149
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 物質生物化学
Research InstitutionKyushu University

Principal Investigator

OHNO Motonori  Kyushu University, Faculty of Science, Professor, 理学部, 教授 (30038434)

Co-Investigator(Kenkyū-buntansha) SHIMOHIGASHI Yasuyuki  Kyushu University, Faculty of Science, Res. Associate, 理学部, 助手 (00211293)
WAKI Michinori  Kyushu University, Faculty of Science, Res. Associate, 理学部, 助手 (30037212)
AOYAGI Haruhiko  Kyushu University, Faculty of Science, Assoc. Professor, 理学部, 助教授 (80037267)
Project Period (FY) 1989 – 1990
Project Status Completed (Fiscal Year 1990)
Budget Amount *help
¥5,100,000 (Direct Cost: ¥5,100,000)
Fiscal Year 1990: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 1989: ¥3,800,000 (Direct Cost: ¥3,800,000)
KeywordsTrimeresurus flavoviridis / Phospholipase A_2 / Isozyme / Genetic engineering / cDNA / Genome DNA / ハブ毒 / アミノ酸配列 / アクロモバクタ-プロテア-ゼI / α→β転位 / イソ酵素
Research Abstract

A highly reactive Asp-49-phospholipase A_2 (PLA_2) and two Lys-49-PLA_2, whose activities are only 1-2% that of Asp-49-PLA_2, from Trimeresurus flavoviridis venom contain 122 amino acid residues, and their sequences are 60% homologous and the positions of the 14 half-cystine residues are identical. Such PLA_2 isozymes provide an invaluable system for elucidating the structural elements required for eliciting catalytic function and various physiological functions. The aim of this research is to study the structure-function relationships of PLA_2 through synthesis of mutant proteins of the types of T. flavoviridis PLA_2. (1) As a step of this study, an active site His47-Asp99 couple in Asp-49-PLA_2 was investigated by pH-dependent methylation of His47 with methyl p-nitrobenzenesulfonate. Protonation of His47 appears to stabilize a transient state of catalysis. (2) Three cDNAs for Asp-49-PLA_2 and two Lys-49-PLA_2 were prepared. The amino acid sequence deduced from the uncleotide sequence … More of cDNA of Asp-49-PLA_2 was partially inconsistent with the amino acid sequence determined with the protein. The reinvestigation of the protein sequence established that the sequence from cDNA is correct. The nucleotide sequence of a cDNA encoding a PLA_2 which is similar to an Asp-49-PLA_2 called PL-X was also sequenced. Expression of the proteins using the cDNAs by recombinant DNA technology has not yet been successful. Intensive study is in progress. (3) Comparison of the four cDNAs encoding four different PLA_2 led to an interesting discovery that the nucleotide sequences of 5'- and 3'-noncoding regions are much more homologous than those of the coding regions. As a step for searching the roles of the noncoding regions in regulation and expression, analysis of genome DNA is on the way. One of nine clones obtained us under analysis. (4) Although expression of PLA_2 proteins has not yet been successful during the period, the finding of the unique nucleotide sequences for T. flavoviridis PLA_2 isozymes established the basis for future development. Less

Report

(3 results)
  • 1990 Annual Research Report   Final Research Report Summary
  • 1989 Annual Research Report
  • Research Products

    (18 results)

All Other

All Publications (18 results)

  • [Publications] T.Kohzuma,N.Oda, H.Kihara,M.Ohno: "Investigation of an Active Site HistidineーAspartate Couple in <Trimeresurus>___ー <flavoviridis>___ー Phospholipase A_2" Journal of Biochemistry. 106. 1054-1058 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] K.Yoshizumi,S.ーY.Liu,T.Miyata,S.Saita,M.Ohno,S.Iwanaga,H.Kihara: "Purification and Amino Acid Sequence of Basic Protein I,a Lysineー49ーPhospholipase A_2 with Low Activity,from the Venom of Trimeresurus flavoviridis (Habu Snake)" Toxicon. 28. 43-54 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y.Shinoda,A.Shouji,A.Suzuki,T.Ashida,H.Kihara,M.Ohno: "Preliminary Crystallographic Study of Phospholipase A_2 from the Venom of Trimeresurus flavoviridis (Habu Snake)" Journal of Biochemistry. 107. 84-86 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] S.ーY.Liu,K.Yoshizumi,N.Oda,M.Ohno,F.Tokunaga,S.Iwanaga,H.Kihara: "Purification and Amino Acid Sequence of Basic Protein II,a Lysineー49ーPhospholipase A_2 with Low Activity,from Trimeresurus flavoviridis Venom" Journal of Biochemistry. 107. 400-408 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] N.Oda,T.Ogawa,M.Ohno,H.Sasaki,Y.Sakaki,H.Kihara: "Cloning and Sequence Analysis of cDNA for Trimeresurus flavoviridis Phospholipase A_2,and Consequent Revision of the Amino Acid Sequence" Journal of Biochemistry. 108. 816-821 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] K. Kohzuma, N. Oda, H. Kihara, and M. Ohono: "Investigation of an Active Site Histidine-Aspartate Couple in Trimeresurus flavoviridis Phospholipase A_2" Journal of Biochemistry. 106. 1054-1058 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] K. Yoshizumi, S. -Y. Liu, T. Miyata, S. Saita, M. Ohno, s. Iwanaga, and H. Kihara: "Purification and Amino Acid Sequence of Basic Protein I, a Lysine-49-Phospholipase A_2 with Low Activity, from the Venom of Trimeresurus flavoviridis (Habu Snake)" Toxicon. 28. 43-54 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y. Shinoda, A. Shouji, A. Suzuki, T. Ashida, H. Kihara, and M. Ohno: "Preliminary Crystallographic Study of Phospholipase A_2 from the Venom of Trimeresurus flavoviridis (Habu Snake)" Journal of Biochemistry. 107. 84-86 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] S. -Y. Liu, K. Yoshizumi, N. Oda, M. Ohno, F. Tokunaga, S. Iwanaga, and H. Kihara: "Purification and Amino Acid Sequence of Basic Protein II, a Lysine-49-Phospholipase A_2 with Low Activity, from Trimeresurus flavoviridis Venom" Journal of Biochemistry. 107. 400-408 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] N. Oda, T. Ogawa, M. Ohno, H. Sasaki, Y. Sasaki, and H. Kihara: "Cloning and Sequence Analysis of cCNA for Trimeresurus flavoviridis Phospholipase A_2, and Consequent Revision of the Amino Acid Sequence" Journal of Biochemistry. 108. 816-821 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] T.Kohzuma,N.Oda,H.Kihara,M.Ohno: "Investigation of an Active Site HistidineーAspartate Couple in <Trimeresurus>___ー <flavoviridis>___ー Phospholipase A_2" Journal of Biochemistry. 106. 1054-1058 (1989)

    • Related Report
      1990 Annual Research Report
  • [Publications] K.Yoshizumi,S.ーY.Liu,T.Miyata,S.Saita,M.Ohno,S.Iwanaga,H.Kihara: "Purification and Amino Acid sequence of Basic Protein I,a Lysineー49ーPhospholipase A_2 with Low Activity,from the Venom of <Trimeresurus>___ー <flavoviridis>___ー (Habu Snake)" Toxicon. 28. 43-54 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Y.Shinoda,A.Shouji,A.Suzuki,T.Ashida,H.Kihara,M.Ohno: "Preliminary Crystallographic Study of Phospholipase A_2 from the Venom of <Trimeresurus>___ー <flavoviridis>___ー (Habu Snake)" Journal of Biochemistry. 107. 84-86 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] S.ーY.Liu,K.Yoshizumi,N.Oda,M.Ohno,F.Tokunaga,S.Iwanaga,H.Kihara: "Purification and Amino Acid Sequence of Basic Protein II,a Lysineー49ーPhospholipase A_2 with Low Activity,from <Trimeresurus>___ー <flavoviridis>___ー Venom" Journal of Biochemistry. 107. 400-408 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] N.Oda,T.Ogawa,M.Ohno,H.Sasaki,Y.Sakai,H.Kihara: "Cloning and Sequence Analysis of cDNA for <Trimeresurus>___ー <flavoviridis>___ー Phospholipase A_2,and Consequent Revision of the Amino Acid Sequence" Journal of Biochemistry. 108. 816-821 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 吉住清美: "Purification and Amino Acid Sequence of Basic Protein I,a Lysine-49-Phospholipase A_2 with Low Activity,from the Venom of Trimeresurus flavoviridis(Habu Snake)" Toxicon. 28. 43-54 (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] 劉松原: "Purification and Amino Acid Sequence of Basic Protein II,a Lysine-49-Phospholipase A_2 with Low Activity,from Trimeresurus flavoviridis Venom" Journal of Biochemistry(Tokyo). 107. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] 小田直子: "Cloning and Sequence Analysis of cDNA for Trimeresurus Flavoviridis Phospholipase A_2 and the Revised Amino Acid Sequence" Journal of Biochemistry(Tokyo).

    • Related Report
      1989 Annual Research Report

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Published: 1989-04-01   Modified: 2016-04-21  

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