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Fast Protein Crystallographic Refinement System Using 3D Computer Graphics System with Built - in CPU.

Research Project

Project/Area Number 01880031
Research Category

Grant-in-Aid for Developmental Scientific Research (B).

Allocation TypeSingle-year Grants
Research Field 生物物性学
Research InstitutionNagaoka University of Technology

Principal Investigator

MITSUI Yukio  Professor Faculty of Engineering, Nagaoka University of Tehcnology, 工学部, 教授 (40012637)

Co-Investigator(Kenkyū-buntansha) ISHIGURO Masamichi  Principal Investigator Biomedical Institute, Suntory Ltd., 室長
永嶋 伸也  味の素(株)中央研究所, 生任研究員
NAKAMURA Kazuo  Assoc. Professor Faculty of Engineering, Nagaoka University of Technology, 工学部, 助教授 (00012675)
NAGASHIMA Nobya  Principal investigator Central Research Institute, Ajinomoto Ltd.
Project Period (FY) 1989 – 1990
Project Status Completed (Fiscal Year 1990)
Budget Amount *help
¥4,600,000 (Direct Cost: ¥4,600,000)
Fiscal Year 1990: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 1989: ¥4,100,000 (Direct Cost: ¥4,100,000)
KeywordsComputer graphics / Protein structure / X-ray structure analysis / Protein crystallography / Protein structure refinement / 蛋白結晶学
Research Abstract

1.3D computer graphics "IRIS" with built - in CPU was purchased. After checking the basic performance, molecular display program QUANTA and molecular mechanics program CHARMM have been installed and made active.
2. The program "FRODO" has been transplanted from Vector General graphics system to IRIS graphics system making possible the prompt interpretations of protein electron density maps.
3. Using the above hard - and soft - ware systems, the structures of murine interferon, ribonuclease Ms complexed with 3'GMP and SSI-subtilisin complex have been successfully refined.
4. Through the achievements described in 3. Above, the usefulness of the system developed here has fully been proved.

Report

(3 results)
  • 1990 Annual Research Report   Final Research Report Summary
  • 1989 Annual Research Report
  • Research Products

    (19 results)

All Other

All Publications (19 results)

  • [Publications] Y.Takeuchi,Y.Mitsui: "Structural and Functional Aspects of ProteinーProtein Interaction" GBF Monographs,Vol.12“Advances in Protein Desigm". 177-1783 (1989)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y.Takeuchi,S.Kojima,K.Miura,Y.Mitsui: "Molecular Recognition at the Interface between Subtilism and SSI" Protein Engineering(M.Ikehara ed.)Japan Scientific Societies Press. 103-108 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y.Takeuchi,S.Kojima,K.Miura,Y.Mitsui: "Molecular Recognition at the Active Site of Subtilis in BPN´" Protein Engineering. (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y.Takeuchi,K.T.Nakamura,Y.Mitsui: "Refined Crystal structure of the Complex of Subtilisin and SSI" J.Mol.Biol.(1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] 三井 幸雄,石川 弘紀,竹内 康雄: "タンパク質の立体構造と機能" 現代化学、増刊19「プロテイン・エンジニアリング」. 145-160 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] 熊谷 泉,竹内 康雄,三井 幸雄,三浦 謹一郎: "プロテア-ゼとプロテア-ゼ・インヒビタ-" シリ-ズ 分子生物学の進歩 3.蛋白質の件能構増. 219-241 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y. Takeuchi, Y. Mitsui et al.: "Structural and functional aspects of protein - protein interaction." Advances in Protein Design. 177-183 (1989)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y. Takeuchi, S. Kojima, K. Miwa, Y. Mitsui et al.: "Molecular recognition at the interface between subtilisin and SSI." Protein Engineering. 103-108 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y. Takeuchi, S. Kojima, K. Miwa, Y. Mitsui et al.: "Molecular recognition at the active site of subtilisin BPN'" Protein Engineering.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y. Takeuchi, K. T. Nakamura, Y. Mitsui et al.: "Refined crystal structure of the complex of subtilisin and SSI" J. Mol. Biol.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1990 Final Research Report Summary
  • [Publications] Y.Takeuchi,S.Kojima,K.Miura,Y.Mitsi: "Molecular Recognition at the Interface between Subtilisin and SSI" Protein Engineering (M.Ikehara ed.) Japan Scientific Societies Press. 103-108 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Y.Takeuchi,S.Kojima,K.Miura,Y.Mitsui: "Molecular Recognition at the Active Site of Subtilis in BPN'" Protein Engineering. (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Y.Takeuchi,K.T.Nakamura,Y.Mitsui: "Refined Crystal structure of the Complex of Subtilisim and SSI" J.Mol.Biol.(1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] 三井 幸雄,石川 弘紀,竹内 康雄: "タンパク質の立体構造と機能" 現代化学,増刊19「プロテイン、エンジニアリング」. 145-160 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 熊谷 泉,竹内 康雄,三井 幸雄,三浦 謹一郎: "プロテア-ゼとプロテア-ゼ・インヒビタ-" シリ-ズ分子生物学の進歩 3.蛋白質の機能構造. 219-241 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] T.Nonaka,Y.Mitsui,K.T.Nakamura: "Three-dimensional Structure of RNase Ms" Nucleic Acids Res.Symposium Series. No.21. 71-72 (1989)

    • Related Report
      1989 Annual Research Report
  • [Publications] T.Senda,S.Matsuda,Y.Mitsui: "Three-dimensional Structure of Recombinant Murine Interferon-β" Proc.Japan Acad.in press. (1990)

    • Related Report
      1989 Annual Research Report
  • [Publications] 中村和郎: "タンパク質の電子密度図解釈用グラフィックス・プログラムFRODOの使い方" 日本結晶学会誌. 30. 215-222 (1988)

    • Related Report
      1989 Annual Research Report
  • [Publications] 磯晃二郎,三井幸雄: "タンパク質のかたちをコンピュ-タ-グラフィックスで見る" 遺伝. 42. 1-2 (1988)

    • Related Report
      1989 Annual Research Report

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Published: 1989-04-01   Modified: 2016-04-21  

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