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Transcription Signals and High-ordered Regulatory Mechanisms for Plant Gene Expression

Research Project

Project/Area Number 02304006
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field 植物生理学
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

IWABUCHI Masaki  Kyoto Univ. Botany Professor, 理学部, 教授 (30000839)

Co-Investigator(Kenkyū-buntansha) YAMAZAKI Kenichi  Nagoya Univ. Agricul. Lecture, 農学部, 助手 (40182480)
UCHIMIYA Hirobumi  Tokyo Univ. Applied Microbio. Professor, 応用微生物研究所, 教授 (50142229)
MACHIDA Yasunori  Nagoya Univ. Botany Professor, 理学部, 教授 (80175596)
NAKAMURA Kenzo  Nagoya Univ. Agri. Professor, 農学部, 教授 (80164292)
MINAMIKAWA Takao  Tokyo Metro. Univ. Botany Professor, 理学部, 教授 (30087001)
佐々木 幸子  京都大学, 農学部, 助手 (00026519)
Project Period (FY) 1990 – 1992
Project Status Completed (Fiscal Year 1992)
Budget Amount *help
¥25,000,000 (Direct Cost: ¥25,000,000)
Fiscal Year 1992: ¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 1991: ¥8,400,000 (Direct Cost: ¥8,400,000)
Fiscal Year 1990: ¥14,700,000 (Direct Cost: ¥14,700,000)
KeywordsPlant genes / Transcription Regulation / Cis-elements / DNA-binding proteins / Cell function / Highly ordered regulation mechanism / Promoter structure / Gene expression specificity / 高次調節機溝 / 植物遺伝子転写制御 / トランス制御因子 / 細胞特異的遺伝子発現 / 胚発生 / DNA結合タンパク質 / 葉緑体遺伝子 / DNAベンディング / 植物遺伝子転写 / DNA結合核タンパク質
Research Abstract

The aim of the present cooperation research (A) was to investigate the regulatory mechanisms of plant gene expression though the interaction between cis-acting DNA sequences and trans-control factors. Each partaker used his own experimental system and has identified gene-specific regulatory DNA sequences and the sequence-specific DNA binding proteins.
The cis-elements defining the S phase-specific expression of wheat H3 gene were indentified to be the hexameric and octameric motifs in the proximal promoter region and the hexamer-specific DNA-binding protein, HBP-1a(17), was shown to be a bZIP-type protein by sequence analysis of the cDNA clone. The major cis-regions of a concanavalin A gene of Canavalina gladiata was shown to be located downstream of -745 and some DNA-binding proteins that can interact with the regions were also identified. The DNA sequences conferring the induction of high-level of expression of a sweet potato alpha-amylase and sporamin genes was identified. The DNA-binding factor SP8BF was demonstratedto bind to a CGTCA motif in the 5'-upstream region of the alpha-amylase gene. One of the auxin-induced genes, par gene, was isolated and the positive or negative cis-regions were found. DNA-binding proteins that bind to the cis-regions of rolC gene in Ri plasmid were identified.

Report

(4 results)
  • 1992 Annual Research Report   Final Research Report Summary
  • 1991 Annual Research Report
  • 1990 Annual Research Report
  • Research Products

    (58 results)

All Other

All Publications (58 results)

  • [Publications] Kawata, Takefumi: "Isolation and characterization of a cDNA clone encoding the TATA box-binding protein (TFIIDE from wheat" Plant Mol.Biol.19. 867-872 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Terada,Rie: "A wheat histone H3 promoter confers cell division-dependent and -independent expression of the gus A gene in transgenic rice plants" Plant J.3. 241-252 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yamauchi,Disuke: "Cystein endopeptidase from Vigna mungo:gene structure and expression" Plant Cell Physiol.33. 789-797 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ishiguro,Sumie: "The nuclear factor SP8BF binds to the 5^'-upstream regions of three different genes coding for major tuberous root proteins of sweet potato" Plant Mol.Biol.18. 97-108 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Onouchi,H.: "Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells" Nucl.Acids Res.19. 6373-6378 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Suzuki,Akihiro: "Single-strand DNA of 5^'upstream region of rol C gene interacts with nuclear proteins of carrot cell cultures" Biochem.Biophys.Res.Commun.188. 727-733 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Mikami,Koji: "Regulation of cell cycle-dependent gene expression.In ″Control of Plant Gene Expressin″(ed.D.P.S.Verma)" CRC Press Inc., 17 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Uchimiya,Hirobumi: "Production of transgenic rice plants by direct gene transfer into protoplasts.In ″Plant Transformation Protocols″(ed.L.Fitzmaurice and F.Lin)" Academic Press, (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kawata, T. et al.: "Isolation and characterization of a cDNA clone encoding the TATA box-binding protein (TFIID) from wheat." Plant Mol. Biol.19. 867-872 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Terada, R. et al.: "A wheat histone H3 promoter confers cell division-dependent and -independent expression of the gus A gene in transgenic rice plats." Plant J.3. 241-252 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yamauchi, D. et al.: "Cystein endopeptidase from Vigna mungo: gene structure and expression." Plant Cell Physiol.33. 789-797 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ishiguro, S. et al.: "The nuclear factor SP8BF binds to the 5'-upstream regions of three different genes coding for major tuberous root proteins of sweet potato." Plant Mol. Biol.18. 97-108 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Onouchi, H. et al.: "Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells." Nucl. Acids Res.19. 6373-6378 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Suzuki, A. et al.: "Single-strand DNA of 5'-upstream region of rol C gene interacts with nuclear proteins of carrot cell cultures." Biochem. Biophys. Res. Commun.19. 727-733 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yamazaki, K. et al.: "TGAla, a tobacco DNA-binding protein, increases the rate of initiation in a plant in vitro transcription system." Proc. Natl. Acad. Sci. USA. 87. 7035-7039 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Tasaka, M. et al.: "Protein binding and DNase I-hypersensitive sites in the cis-acting regulatory region of the spore-coat SP96 gene of Dictyostelium." Mech. Develp.36. 105-115 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Nagano, Y. et al.: "Nucleotide sequence and expression of the ribosomal protein L2 gene in pea chloroplasts." Plant Mol Biol.17. 541-545 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Mikami, K. and Iwabuchi, M.: "Regulation of cell cycle -dependent gene expression." In "Control of Plant Gene Expression" (ed.D.P.S. Verma). 51-68 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Uchimiya, H. et al.: "Production of transgenic rice plants by direct gene transfer into protoplasts." In"Plant Transformation Protocols"(ed. L. Fitzmaurice and F. Lin).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kawata,Takafumi: "Isolation and characterization of a cDNA clone encoding the TATA box-binding protein (TFIID) from wheat" Plant Mol.Biol.19. 867-872 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Terada,Rie: "A wheat histone H3 promoter confers cell divisiondependent and-independent expression of the gus a gene in transgenic rice plants" Plant J.3. 241-252 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] Yamauchi,Disuke: "Cystein endopeptidase from Vigna mungo:gene structure and expression" Plant Cell Physiol.33. 789-797 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Ishiguro,Sumie: "The nuclear factor SP8BF binds to the 5'-upstream regions of three defferent genes boding for major tuberous root proteins of sweet potato" Plant Mol.Biol.18. 97-108 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Onouchi,H.: "Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells" Nucl.Acids Res.19. 6373-6378 (1991)

    • Related Report
      1992 Annual Research Report
  • [Publications] Suzuki,Akihiro: "Single-strand DNA of 5'upstream region of rol C gene interacts with nuclear proteins of carrot cell cultures" Biochem.Biophys.Res.Commun.188. 727-733 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Mikami,Koji: "Regulation of cell cycle-dependent gene expression.In “Control of Plant Gene Expression"(ed.D.P.S.Verma.)" CRC Press Inc., 17 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] Uchimiya,Hirobumi: "Production of transgenic rice plants by direct gene transfer into protoplasts.In “Plant Transformation Protocols"(ed.L.Fitzmaurice and F.Lin)" Academic Press, (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Tabata,T.: "HBPー1a and HBPー1b: Leucineーzipper type transcription factors of wheat" The EMBO J.19. 1459-1467 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Takase,H.: "Sequenceーspecific singleーstrand DNAーbinding proteins that interact with the regulatory regions of wheat histone H3 and H4 genes" Biochem.Biophys.Res.Commun.176. 1593-1600 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Kawata,T.: "A cDNA clone encoding HBPー1b homologue in Arabidopsis thaliana" Nucl.Acids Res.20. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Nakayama,T.: "Highly conserved hexamer,octamer and nonamer motifs are positive cisーregulatory elements of the wheat histone H3 gene." FEBS Lett.(1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Tanaka,T.: "Nucleotide sequence of cDNA for an endopeptidase (EPーC1) from pods of maturing Phaseolus vulgaris fruits" Plant Mol.Biol.16. 1083-1084 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Minamikawa,T.: "Expression of αーamylase in Phaseolus vulgaris and Vigna mungo plants" Plant Cell Physiol.33. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Nakayama,T (B.V.Conger,ed.): "Regulation of wheat histone gene expression.In “Critical Reviews in Plant Sciences"" CRC Press, (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Mikami,K. (D.P.S.Verma,ed): "Regulation of cell cycleーdependent gene expression.In “Control of Plant Gene Expression"" Telford Press, (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Kawata,Takefumi: "Cell cycleーregulated gene expression in transgenic plant cells" Develop.Genet.11. 205-213 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Tabata,Tetsuya: "HBPー1a and HBPー1b:Leucineーzipper type transcription factors of wheat" EMBO J.(1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Mikami,Koji: "Regulation of cell cycleーdependent gene expression" In“Control of Plant Gene Expression"(ed.D.P.S.Verma),Telford Press. (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Mikami,Koji: "Cisーacting elements and transーacting factors in the transcription of higher plant histone genes" Oxford Survey of Plant Molecular and Cell Biology. (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Yamauchi,D.: "Structure of the gene encoding concanavalin A from <Canavalia>___ー <gladiata>___ー and its expression in <Escherichia>___ー <coli>___ー cells" FEBS Lett.260. 127-130 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Akasofu,H.: "Nucleotide sequence of the gene for sulfhydrylーendoーpeptidase (SHーEP) from <Vigna>___ー <mungo>___ー" Nucleic Acids Res.18. 1892 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Kanaya,K.: "Specific binding of nuclear protein from tobacco hairy roots cultured in vitro to a 5'ーupstream region of the rolC gene of the Ri plasmid" Plant Cell Physiol.31. 941-946 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Fujii,N.: "Conditions favorable for the somatic embryogenesis in carrot cell culture enhance expression of the <rolC>___ー promoterーGUS fusion gene" Plant Physiol.95. 238-241 (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Hattori,T.: "Sucroseーinduced expression of genes coding for tuberous root storage protein,sporamin,of sweet potato in leaves and petioles" Plant Cell Physiol.32. 79-86 (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Ohta,S.: "Stemーpredominant expression of the sweet potato sporamin gene promoter:βーglucuronidase (GUS) fusion gene in transgenic tobacco is conferred by multiple cell typeーspecific regulatory elements" Mol.Gen.Genet.(1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Shimoda,Nobuyoshi: "Control of expression of Agrobacterium tumefaciens vir genes by synergistic actions of phenolic signal and monosaccharides" Proc.Natl.Acad.Sci.USA. 87. 6684-6688 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Matsumoto,Shogo: "Integration of Agrobacterium TーDNA into a tobacco chromosome:Possible involvement of DNA homology between TーDNA and plant DNA" Mol.Gen.Genet.224. 309-316 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Tasaka,Masao: "Isolation and characterization of spore coat protein (Sp96) gene of <Dictyostelium>___ー <discoideum>___ー" Cell Diff.Develop.31. 1-9 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Sasaki,Yukiko: "Correlation of plastid DNA copy number with plastid gene expression in various organs in mature pea plants(<Pisum>___ー <sativum>___ー L.)" Plant Cell Physiol.31. 925-931 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Nagano,Yukio: "An essential gene of <Escherichia>___ー <coli>___ー that has sequence similarity to an unknown chloroplast gene" Mol.Gen.Genet.(1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Yamazaki,Kenーichi: "TGAla,a tobacco DNAーbinding protein,increases the rate of initiation in a plant <in>___ー <vitro>___ー transcription system" Proc.Natl.Acad.Sci.USA. 87. 7035-7039 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Katagiri,F.: "A plant DNAーbinding protein increases the number of active preinitiation complexes in a human <in>___ー <vitro>___ー transcription system" Genes Develop.4. 1899-1909 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 岩渕 雅樹(分担執筆): "発生・分化の遺伝子的背景(江口・鈴木・名取編)" 東京大学出版会, 288 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 岩渕 雅樹(分担執筆): "高等植物の情報発現と制御(岡田・池田編)" 丸善株式会社, 292 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 岩渕 雅樹(分担執筆): "遺伝子の発現と制御II(志村・村松・鈴木・近藤編)" 丸善株式会社, 325 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 岩渕 雅樹(分担執筆): "植物全能性の分子生物学(駒嶺他8名編)" 朝倉書店, 305 (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] 内宮 博文: "植物遺伝子操作マニュアルートランスジェニック植物の作り方ー" 講談社サイエンティフィク, 138 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 町田 泰則(分担執筆): "高等植物の情報発現と制御(岡田・池田編)" 丸善株式会社, 292 (1990)

    • Related Report
      1990 Annual Research Report

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Published: 1990-04-01   Modified: 2016-04-21  

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