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Dissection of polypeptide translocator function of SecY

Research Project

Project/Area Number 02404087
Research Category

Grant-in-Aid for General Scientific Research (A)

Allocation TypeSingle-year Grants
Research Field 分子遺伝学・分子生理学
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

ITO Koreaki  Kyoto Univ., Professor, ウイルス研究所, 教授 (90027334)

Co-Investigator(Kenkyū-buntansha) AKIYAMA Yoshinori  Kyoto Univ., Instructor, ウイルス研究所, 助手 (10192460)
Project Period (FY) 1990 – 1992
Project Status Completed (Fiscal Year 1992)
Budget Amount *help
¥15,800,000 (Direct Cost: ¥15,800,000)
Fiscal Year 1992: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 1991: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 1990: ¥9,800,000 (Direct Cost: ¥9,800,000)
KeywordsProtein secretion / protein translocation / SecY / SecE / Dominant mutation / Periplasm / Membrane protein / タンパク質のおりたたみ / ジスルフィド結合 / シグナルペプチド / プロテア-ゼ / 分泌 / HNS / サプレッサ-
Research Abstract

SecY is an integral membrane protein and believed to be a central component of the protein translocator in Escherichia coli. We have identified dominant negative mutations of secY whose expression interfered with protein export. Such mutations proved to reside in the C-terminal third of SecY, mostly in the cytoplasmic domain 5 (C5). On of them (secY^d1), a three residue deletion in the C5-TM9 interface, was strongly dominant-negative. The dominant negative mutant protein will sequester the interacting components in an inactive complex, and hence compete with SecY^+ for the formtion of the functiona SecY complex. Linker insertion mutations that suppressed secY^d1 were localized within the C4-TM7 region is important for SecY's interaction with other components of the system.
Consistent with our model, the secY24(Ts) mutation in the C4 domain was found to impair the SecY's interaction with SecE. Also, overproduction of either SecE or "ORF12" in the secDF operon overcame the export interference. Futhermore, we were able to identify a new gene, ydr, as another dosage-dependent overcomer of secY^d1. Although overexpressed (and presumably uncomplexed) SecY was rapidly degraded in vivo, it was significantly stabilized by simultaneous overproduction of either SecE, Orf12,or Ydr. Interestingly, overproduction of Ydr in the secY24 mutant cell severely interfered with protein export and the viability. Ydr, a hydrophilic 181-residue protein with is C-terminal region potentially forming an amphiphilic alpha-helix, is loosely associated with the membrane.
Finally we addressed whether any factors are required for membrane protein integration. Our mutational analyses suggested that FtsH, a putative membrane bound ATPase with homology to a family of eukaryotic ATPases, has a role in assuring efficient anchoring of a hydrophobic stretch to the membrane as well as in the translocation process itself.

Report

(4 results)
  • 1992 Annual Research Report   Final Research Report Summary
  • 1991 Annual Research Report
  • 1990 Annual Research Report
  • Research Products

    (57 results)

All Other

All Publications (57 results)

  • [Publications] Akiyama,Y.and Ito,K.: "SecY protein,a membrane embedded secretion factor of E.coli,is cleaved by the OmpT protease in vitro." Biochem.Biophys.Res.Commun.167. 711-715 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Akiyama,Y.,Inada,T.,Nakamura,Y.and Ito,K.: "SecY,a multispanning membrane protein,contains a potential leader peptidase cleavage site." J.Bacteriol.172. 2888-2893 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Amaya,Y.,Nakano,A.,Ito,K.and Mori,M.: "Isolation of a yeast gene,SRH1,that encodes a homologue of the 54K subunit of mammalian signal recognition particle." J.Biochem.107. 457-463 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Baba,T.,Jacq,A.,Brickman,E.,Beckwith,J.,Taura,T.,Ueguchi,C.,Akiyama,Y.,and Ito,K.: "Characterization of cold-sensitive secY mutants of Escherichia coli." J.Bacteriol.172. 7005-7010 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K.: "Structure,function and biogenesis of SecY,an integral membrane protein involved in protein export." J.Bioenerg.Biomembr.22. 353-367 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Nakamura,K.,Takamatsu,H.,Akiyama,Y.,Ito,K.,and Yamane,K.: "Complementation of the protein transport defect of the Escherichia coli secY mutant (secY24) by B.subtilis secY homologue." FEBS Lett.273. 75-78 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ueguchi,C.,and Ito,K.: "Escherichia coli sec mutants accumulate a processed immature form of maltose-binding protein (MBP),a late-phase intermediate in MBP export." J.Bacteriol.172. 5643-5649 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yamane,K.,Akiyama,Y.,Ito,K.,and Mizushima,S.: "A positively charged region is a determinant of the orientation of cytoplasmic membrane proteins in Escherichia coli." J.Biol.Chem.265. 21166-21171 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Sakaguchi,M.,Ueguchi,C.,Ito,K.,and Omura,T.: "Yeast gene which suppresses the defect in protein export of a secY mutant of E.coli." J.Biochem.109. 799-802 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Taura,T.,and Ito,K.: "Does protein secretion activity vary during the cell cycle of Escherichia coli?" J.Biochem.109. 811-815 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K.and Akiyama,Y.: "In vivo analysis of integration of membrane proteins in Escherichia coli." Mol.Microbiol.5. 2243-2253 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kamitani,S.,Akiyama,Y.,and Ito,K.: "Identification and characterization of an Escherichia coli gene required for the formation of correctly folded alkaline phosphatase,a periplasmic enzyme." EMBO J.11. 57-62 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ueguchi,C.,and Ito,: "Multicopy suppression:an approach to understanding intracellular functioning of the protein export system." J.Bacteriol.174. 1454-1461 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Shimoike,T.,Akiyama,Y.,Baba,T.,Taura,T.,and Ito,K.: "SecY variants that interfere with Escherichia coli protein export in the presence of normal secY." Mol.Microbiol.6. 1205-1210 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K.: "SecY and integral membrane components of the Escherichia coli protein translocation system." Mol.Microbiol.6. 2423-2428 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Taura,T.,Ueguchi,C.,Shiba,K.,and Ito,K.: "Insertional disruption of the nusB gene leads to cold-sensitive growth and suppression of the secY24 mutation." Mol.Gen.Genet.234. 429-432 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Akiyama,Y.,Kamitani,S.,Kusukawa,N.,and Ito,K.: "In vitro catalysis of oxidative folding of disulfidebonded proteins by Escherichia coli dsbA (ppfA) gene product." J.Biol.Chem.267. 22440-22445 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Akiyama,Y.and Ito,K.: "Folding and assembly of bacterial alkaline phosphatase in vitro and in vivo." J.Biol.Chem.268,. (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K.,Akiyama,Y.,Ueguchi,C.,Taura,T.and Baba,T.: "Structure and function of E.coli SecY protein,an integral membrane component of the protein translocation system.Protein Engineering.Protein Design in Basic Research,Medicine,and Industry (ed.M.Ikehara)" Japan Scientific Societies Press/Springer-Verlag,6 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Akiyama,Y. and Ito,K.: "SecY protein, a membrane embedded secretion factor of E.coli, is cleaved by the OmpT protease in vitro." Biochem.Biophys.Res.Commun. 167. 711-715 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Akiyama,Y., Inada,T., Nakamura,Y. and Ito,K: "SecY, a multispanning membrane protein, contains a potential leader peptidase cleavage site." J.Bacteriol. 172. 2888-2893 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K: "Structure, function and biogenesis of SecY, an integral membrane protein involved in protein export." J.Bioenerg.Biomembr. 22. 353-367 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ueguchi,C. and Ito,K: "Escherichia coli sec mutants accumulate a processed immature form of maltose-binding protein (MBP), a late-phase intermediate in MBP export" 4.Bacteriol. 172. 5643-5649 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Baba,T., Jacq,A., Brickman,E., Beckwith,J., Taura,T., Ueguchi,C., Akiyama,Y., and Ito,K: "Characterization of cold-sensitive secY mutants of Escherichia coli" J.Bacteriol. 172. 7005-7010 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Taura,T., and Ito,K: "Does protein secretion activity vary during the cell cycle of Escherichia coli?" J.Biochem. 109. 811-815 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K. and Akiyama,Y: "In vivo analysis of integration of proteins Escherichia coli." Mol.Microbiol. 5. 2243-2253 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K., and Akiyama,Y.: "Membrane components of the protein secretion machinery." Meth.Cell Biol. 34. 189-203 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kamitani,S., Akiyama,Y., and Ito,K: "Identification and characterization of an Escherichia coli gene required for the formation of correctly folded alkaline phosphatase, a periplasmic enzyme." EMBO J. 11. 57-62 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ueguchi,C., and Ito,K: "Multicopy suppression an approach to understanding intracellular functioning of the protein export system." J.Bacteriol. 174. 1454-1461 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Shimoike,T., Akiyama,Y., Baba,T., and Ito,K: "SecY variants that interfere with Escherichia coli protein export in the presence of normal secY." Mol.Microbiol. 6. 1205-1210 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K: "SecY and integral membrane components of the Escherichia coli protein translocation system." Mol.Microbiol. 6. 2423-2428 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Taura,T., Ueguchi,C., Shiba,K., and Ito,K: "Insertional disruption of the nusB gene leads to cold-sensitive growth and suppression of the secY24 mutation." Mol.Gen.Genet. 234. 429-432 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Akiyama,Y., Kamitani,S., Kusukaw,N., and Ito,K: "In vitro catalysis of oxidative folding of disulfide-bonded proteins by Escherichia coli dsbA (ppfA) gene product" J.Biol.Chem. 267. 22440-22445 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Akiyama,Y. and Ito,K.(1993): "Folding and assembly of bacterial alkaline phosphatase in vitro and in vivo." J.Biol.Chem. 268. (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ito,K., Akiyama,Y., Ueguchi,C., Taura,T. and Baba,T: Japan Scientific Societies Press/Springer-Verlag. Structure and function of E.coli SecY protein, an integral membrane component of the protein translocation system. Protein Engineering. Protein Design in Basic Research, Medicine and Industry(ed. M.Ikehara), 6 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kamitani,S.,Akiyama,Y.,and Ito,K.: "Identification and characterization of an Escherichia coli gene required for the formation of correctly folded alkaline phosphatase,a periplasmic enzyme." EMBO J.11. 57-62 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Ueguche,C.,and Ito,K.: "Multicopy suppression:an approach to understanding intracellular functioning of the protein export sys-tem." J.Bacteriol.174. 1454-1461 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Shimoike,T.,Akiyama,Y.,Baba,T.,Taura.T.,and Ito,K.: "SecY variants that interfere with Escherichia coli protein export in the presence of normal secY." Mol.Microbiol.6. 1205-1210 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Ito,K.: "SecY and integral membrane components of the Escherichia coli portein translocation system." Mol.Microbiol.6. 2423-2428 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Taura,T.,Ueguche,C.,Shiba,K.,and Ito,K.: "Insertional disruption of the nusB gene leads to coldsensitive growth and suppression of the secY24 mutation." Mol.Gen.Genet.234. 429-432 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Akiyama,Y.,Kamitani,S.,Kusukawa,N.,and Ito,K.: "In vitro catalysis of oxidative folding of disulfidebonded proteins by Escherichia coli dsbA(ppfA)gene product." J.Biol.Chem.267. 22440-22445 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Akiyama,Y.,and Ito,K.: "Folding and assembly of bacterial alkaline phosphatase in vitro and in vivo." J.Biol.Chem.268. (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] Sakaguchi,M.,Ueguchi,C.,Ito,K.,and Omura,T.: "Yeast gene which suppresses the defect in protein export of a secY mutant of E.coli." J.Biochem.109. 799-802 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Taura,T.,and Ito,K.: "Does protein secretion activitiy vary during the cell cycle of Escherichia coli?" J.Biochem.109. 811-815 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Ito,K.and Akiyama,Y.: "In vivo analisis of integration of membrane proteins in Escherichia coli." Mol.Microbiol.5. 2243-2253 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Kamitani,S.,Akiyama,Y.,and Ito,K.: "Identification and characterization of an Escherichia coli gene required for the formation of correctly folded alkaline phosphatase,a periplasmic enzyme." EMBO J.11. 57-62 (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Ueguchi,C.,and Ito,K.: "Multicopy suppression: an approach to understanding intracellular functioning of the protein export system." J.Bacteriol.174. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Shimoike,T.,Akiyama,Y.,Baba,T.,Taura,T.,and Ito,K.: "SecY variants that interfere with Escherichia coli protein export in the presence of normal secY." Mol.Microbiol.6. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Akiyama,Y.and Ito,K.: "SecY protein,a membrane embedded secretion factor of E.coli,is cleaved by the OmpT protease in vitro." Biochem.Biophys.Res.Commun.167. 711-715 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Akiyama,Y.,Inada,T.,Nakamura,Y.and Ito,K.: "SecY,a multispanning membrane protein,contains a potential leader peptidase cleavage site." J.Bacteriol.172. 2888-2893 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Amaya,Y.,Nakano,A.,Ito,K.and Mori,M.: "Isolation of a yeast gene,SRH1,that encodes a homologue of the 54K subunit of mammalian signal recognition particle." J.Biochem.107. 457-463 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Baba,T.,Jacq,A.,Brickman,E.,Beckwith,J.,Taura,T.,Ueguchi,C.,Akiyama,Y.,and Ito,K.: "Characterization of coldーsensitive secY mutants of Escherichia coli." J.Bacteriol.172. 7005-7010 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Ito,K.: "Structure,function and biogenesis of SecY,an integral membrane protein involved in protein export." J.Bioenerg.Biomembr.22. 353-367 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Nakamura,K.,Takamatsu,H.,Akiyama,Y.,Ito,K.,and Yamane,K.: "Complementation of the protein transport defect of the Escherichia coli secY mutant (secY24) by B.subtilis secY homologue." FEBS Lett.273. 75-78 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Ueguchi,C.,and Ito,K.: "Escherichia coli sec mutants accumulate a processed immature form of maltoseーbinding protein (MBP),a lateーphase intermediate in MBP export." J.Bacteriol.172. 5643-5649 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Yamane,K.,Akiyama,Y.,Ito,K.,and Mizushima,S.: "A positively charged region is a determinant of the orientation of cytoplasmic membrane proteins in Escherichia coli." J.Biol.Chem.265. 21166-21171 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Ito,K.,Akiyama,Y.,Ueguchi,C.,Taura,T.,and Baba,T.(ed.M.Ikehara): "Structure and function of E.coli SecY protein,an integral membrane component of the protein translocation system.Protein Engineering.Protein Design in Basic Research,Medicine,and Industry" Japan Scientific Societies Press/SpringerーVerlag,6 (1990)

    • Related Report
      1990 Annual Research Report

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Published: 1990-04-01   Modified: 2016-04-21  

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