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Expression of mRNA cap-binding protein and structure analysis of its cap recognition mechanism

Research Project

Project/Area Number 02453146
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field Physical pharmacy
Research InstitutionOsaka University of Pharmaceutical Sciences

Principal Investigator

ISHIDA Toshimasa  Osaka University of Pharmaceutical Sciences Prof., 薬学部, 教授 (00111021)

Co-Investigator(Kenkyū-buntansha) TOMOO Koji  Osaka University of Pharmaceutical Sciences Assistant, 薬学部, 助手
KAFUKU Yayoi  Osaka University of Pharmaceutical Sciences Assistant, 薬学部, 助手
IN Yasuko  Osaka University of Pharmaceutical Sciences Assistant, 薬学部, 助手
Project Period (FY) 1990 – 1992
Project Status Completed (Fiscal Year 1992)
Budget Amount *help
¥4,800,000 (Direct Cost: ¥4,800,000)
Fiscal Year 1992: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 1991: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1990: ¥2,500,000 (Direct Cost: ¥2,500,000)
Keywordscap-binding protein / IF-4E / mRNA cap structure / gene expression / recognition / structure analysis / IFー4E
Research Abstract

Cap-binding protein (named CBP or IF-4E), the content of which is very small amount in living cell, plays an important role in initiating the protein synthesys on ribosome. In order to elucidate the biochemical and structural nature of this protein and to make clear the selective recognition of mRNA cap structure, we carried out this research project. The main results obtained so far are as follows:
(1) We succeeded in the chemical synthsis of gene of human cap-binding protein (hCBP)(total base pairs of 660).
(2) We established the inclusion of this gene into pBR322 vector and the large amount of expression of hCBP as the inclusion body with human growth hormone.
(3) We established the separation of hCBP from the confused protein and the HPLC purification method.
(4) The functional amino acid residues which probably functions in the selective recognition for the mRNA cap structure characterized by 7-methylguanine base (m7G) were surveyed by a series of model interaction studies.
(5) Based on the above insight, the functional amino acids of hCBP were transformed to the non-functional amino acids by the site-directed mutagenesis. The methods for the gene mutations and the isolation and purification of mutant hCBP proteins were established.
(6) A series of mRNA cap analogues were chemically synthesized.
(7) The interaction modes of these cap analogues with the native and mutant hCBP proteins were investigated by UV and fluorescence spectroscopies. As a result, it was made clear that the His-33, His-37, Trp-102 and Glu-105 residues play important role in interaction with mRNA cap structure. Further, the same results were obtained from the binding experiments of the affinity of m7G-containing column with native and mutant hCBPs.
(8) The X-ray crystal and NMR solution analyses are now in progress.

Report

(4 results)
  • 1992 Annual Research Report   Final Research Report Summary
  • 1991 Annual Research Report
  • 1990 Annual Research Report
  • Research Products

    (35 results)

All Other

All Publications (35 results)

  • [Publications] T.Ishida: "Prominent stacking interaction with aromatic amino acid by N-quarternization of nucleic acid base:X-Ray crystallographic characteristics and biological implication" Archi.Biochem.Biophys.278. 217-227 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Ishida: "Selective binding of guanine base by a tryptophan-con-taining dipeptide" J.Chem.Soc.Chem.Commun.217-218 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Ishida: "Importance of simultaneous cooperation of hydrogen bond pairing and stacking interaction for recognition of guanine base by a peptide:X-Ray crystal..." J.Chem.Soc.Perkin trans.1. 1847-1853 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Ueda: "Epression of a synthetic gene for human cap binding protein (human IF-4E) in Escherichia coli and fluorescence studies on interaction with mRNA cap strcuture.." J.Biochem.(Tokyo). 109. 882-889 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Ueda: "Combination of Trp anf Glu resicues for recognition of mRNA cap structure:Analysis of m7G base recognition site of human cap binding protein(IF-4E)by site-..." FEBS Lett.280. 207-210 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Iyo: "Sequence-dependent interaction of acidic amino acid with gaunine base in tryptophan-containing dipeptides:Spectroscopic studies" Chem.Pharm.Bull.39. 2483-2486 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Y.Kafuku: "Spectroscopic study on interaction of nucleic acid base with tryptophan-containing tripeptides:acetylTrp-X-Trp-NHCH_3(X=Gly,Asn,Asp,Gln and Glu)" Chem.Pharm.Bull.39. 2487-2490 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Ueda: "Cooperative stacking and hydrogen bond pairing interactions of fragment peptide in cap binding protein with mRNA cap structure" Biochim.Biophys.Acta. 1075. 181-186 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Y.Kafuku: "Recognition of nucleic acid base by tryptophan-containing peptides: Spectroscopic study on interaction of N-AcetylTrp-(Gly)m-Asp-(Gly)n-TrpNHCH_3(m=0-2,n=0-2).." Chem.Pharm.Bull.41. 231-234 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Ishida: "Advances in Pharmaceutical Sciences" The Research Foundation for Pharmaceutical Sciences, 27 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Ishida, H.Ueda, K.Segawa, M.Doi, M.Inoue: "Prominent stacking interaction with aromatic amino acid by N-quarternization of nucleic acid base: X-Ray crystallographic characteristics and biological implication" Arch.Biochem.Biophys. 278. 217-227 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Ishida, H.Iyo, H.Ueda, M.Doi, M.Inoue: "Selective binding of guanine base by a tryptophan-containing dipeptide" J.Chem.Soc.Chem.Commun. 217-218 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Ishida, H.Iyo, H.Ueda, M.Doi, M.Inoue, S.Nishimura, K.Kitamura: "Importance of simultaneous cooperation of hydrogen bond pairing and stacking interaction for recognition of guanine base by a peptide: X-Ray crystal analysis of 7-methylguanine-5'-phosphate-tryptophanylglutamic acid complex" J.Chem.Soc.Perkin Trans. 1. 1847-1853 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Ueda, H.Maruyama, M.Doi, M.Inoue, T.Ishida, H.Morioka, S.Nishikawa, S.Uesugi: "Expression of a syntheric gene for human cap binding protein (human IF-4E) in Escherichia coli and fluorescence studies on interaction with mRNA cap structure analogues" J.Biochem. 109. 882-889 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Ueda, H.Iyo, M.Doi, M.Inoue, T.Ishida, H.Morioka, T.Tanaka, S.Nishikawa, S.Uesugi: "Combination of Trp and Glu residues for recognition of mRNA cap structure: Analysis of m7G base recognition site of human cap binding protein (IF-4E) by site-directed mutagenesis" FEBS Lett. 280. 207-210 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Iyo, H.Ueda, Y.Usami, Y.Kafuku, M.Doi, M.Inoue, T.Ishida: "Sequence-dependent interaction of acidic amino acid with guanine base in tryptophan-containing dipeptides: Spectroscopic studies" Chem.Pharm.Bull. 39. 2483-2486 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Y.Kafuku, Y.Matsui, J.Ohtani, Y.Usami, H.Ueda, M.Doi, M.Inoue, T.Ishida: "Spectroscopic study on interaction of nucleic acid base with tryptophan-containing tripeptides: Acetyl-Trp-X-Trp-" Chem.Pharm.Bull. 39. 2487-2490 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Ueda, H.Iyo, M.Doi, M.Inoue, T.Ishida: "Cooperative stacking and hydrogen bond pairing interactions of fragment peptide in cap binding protein with mRNA cap structure" Biochim.Biophys.Acta. 1075. 181-186 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Ishida: "Molecular design of oligopeptides possessing the binding ability selective for a target nucleic acid base" Advances in Pharmaceutical Sciences. 8. 55-81 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Y.Kafuku, J.Ohnishi, M.Doi, M.Inoue, T.Ishida: "Recognition of nucleic acid base by tryptophan-containing peptides: Spectroscopic study on interaction of N-Acetyl-Trp-(Gly)m-Asp-(Gly)n-TrpNHCH_3(m=0 - 2, n=0 - 2) with guanine base" Chem.Pharm.Bull. 41. 231-234 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Y.Kafuku: "Recognition of Nucleic Acid Base by Tryp tophan-Coutining Peptides:Spectroscopic Study on Interaction of N-acetyl Trp-(Gly)m-Asp-(Gly)n-TrPNHCH_3(m=0〜2、n=0〜2)with Guanine" Chem.Pharm.Bull.41. 231-234 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] 石田 寿昌: "薬学研究の進歩研究成果報告集8" 薬学研究奨励財団, 27 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] H.Ueda: "Expression of a synthetic gene for human cap binding protein (human IF-4E) in Escherichia coli and fluorescence studies on interaction with mRNA cap structure analogues" J.Biochem.109. 882-889 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] H.Ueda: "Combination of Trp and Glu residues for recognition of mRNA cap structure:Analysis of m7G base recognition site of human cap binding protein (IF-4E) by siteOdirected mutagenesis" FEBS Lett.280. 207-210 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] H.Iyo: "Sequence-dependent interaction of acidic amino acid with guanine base in tryptophan-containing dipeptides:Spectroscopic studies" Chem.Pharm.Bull.39. 2483-2486 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Y.Kafuku: "Spectroscopic study on interaction of nucleic acid base with tryptopahn-containing tripeptides:Acetyl-Trp-X-NHCH_3 (X=Gly,Asn,Asp,Gln and Glu)" Chem.Pharm.Bull.39. 2487-2490 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] H.Ueda: "Cooperative Stacking and hydrogen bond pairing interactions for fregment peptide in cap binding protein with mRNA cap structure" Biochim.Biophs.Acta. 1075. 181-186 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] T.Ishida: "Importance of simultaneous co-operation of hydrogen hond pairing and stacking interactions for recognition of guanine base by a peptide:X-Ray crystal analysis of 7-methylguanosine-5'-phosphate-Trp-Glu" J.Chem.Soc.Perkin Trans.1. 1991. 1847-1853 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] T.Ishida: "Prominent Stacking Interaction with Aromatic Amino Acid by NーQuarーternization of Nucleic Acid Base:XーRay crystallographic Characteーristics and Biological Implications" Arch.Biochem.Biophys.278. 217-227 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] T.Ishida: "Selective Binding of Guanine Base by a Tryptophanーcontaining Dipeptide" J.Chem.Soc,Chem.Commun. 217-218 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] T.Ishida: "Importance of Simultaneous Cooperation of Hydrogen Bond Pairing and Stacking Interactions for Recognition of Guanine Base by Peptide:Xーray Crystal Analysis of 7ーMethylguanosineー5'ーphosphateーTryptoーpahnylglutamic Acid Complex" J.Chem.Soc.Perkin Trans.1.

    • Related Report
      1990 Annual Research Report
  • [Publications] H.Ueda: "Expression of a synthetic Gene for Human Cap Binding Protein in Escherichia coli and Fluorescence Studies on Interaction with mRNA Cap Structure Analogues" J.Biochem.(Tokyo).

    • Related Report
      1990 Annual Research Report
  • [Publications] H.Ueda: "Combination of Trp and Glu Residues for Recognition of mRNA Gap Structure:Analysis of m7G Base Recognition Site of Human Gap Binding Protein (IFー4E) by Siteーdirected Mutagenesis" FEBS Lett. inpress.

    • Related Report
      1990 Annual Research Report
  • [Publications] H.Iyo: "Interaction of Indole Derivative with Biologically Important Aromatic Compounds,Part 23.Seruenceーdependent Interaction of Acidic Amino Acid with Guanine Base in Tryptophanーcontaining Dipeptides:Spectroscopic Studies" J.Chem.Soc.Perkin Trans.1.

    • Related Report
      1990 Annual Research Report
  • [Publications] H.Ueda: "Eur.J.Biochem." Cooperative Stacking and Hydrogen Bond Pairing Interaction of Fragment Peptide in Cap Binding Protein with mRNA Cap Structure,

    • Related Report
      1990 Annual Research Report

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Published: 1990-04-01   Modified: 2016-04-21  

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