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Development of HLA typing from forensic samples using molecular biological techniques.

Research Project

Project/Area Number 02557033
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field Legal medicine
Research InstitutionDepartment of Legal Medicine, Shinshu University

Principal Investigator

OTA Masao  Dept. of Legal Med., Shinshu Univ., Lecturer., 医学部・法医学, 講師 (50115333)

Co-Investigator(Kenkyū-buntansha) YANO Akihiko  Dept. Med. Zool., Nagasaki Univ., Professor, 医学部・医動物, 教授 (20135122)
INOKO Hidetoshi  Dept. of Transplantation, Tokai Univ. Associate prof., 医学部・移植第II, 助教授 (10101932)
Project Period (FY) 1990 – 1991
Project Status Completed (Fiscal Year 1991)
Budget Amount *help
¥9,300,000 (Direct Cost: ¥9,300,000)
Fiscal Year 1991: ¥2,100,000 (Direct Cost: ¥2,100,000)
Fiscal Year 1990: ¥7,200,000 (Direct Cost: ¥7,200,000)
KeywordsHLA-DNA typing / PCR-RFLP method / genotype / restriction enzyme / HLA-class II antigen / HLA-Class I antigen / personal identification / paternity testing / HLA-DNAタイピング / PCR-RFLP法 / PCR-SSO法 / HLA-クラスII抗原 / HLA-クラスI抗原 / HLAーDNAタイピング / オリゴヌクレチオド / PCRーSSO法 / ホモ接合体 / ヘテロ接合体
Research Abstract

1. In this study, we have developed the polymerase chain-reaction fragment polymorphism(PCR-RFLP)method based on digestion of PCRamplified DNAs with allele specific enzymes as a reliable, convenient and practical HLA class II DNA typing technique in stead of hybridization with multiple sequence specific oligonucleotide probes(PCR-SSO). Especially, the modified PCR-RFLP method incorporating informative enzymes, which have a single recognition site in some alleles but none in other alleles in the amplified regions, is simpler and more sensitive because genotypes can be defined mainly just by checking whether the amplified DNAs are digested or not. This modified one makes reading of the generated RFLP band patterns much easier, and thus all of the class II alleles(DRB1, DRB3, DRB5, DQA1, DQB1, DPAL and DPBL)can be clearly defined both for homozygotes and heterozygotes except three pairs of the alleles(DRB1*1103 and DRB1*1104, DQB1*0602 and DQB1*0603, and DRB5*0201 and DRB5*0202)using 29 restriction enzymes.
2. We have applied this PCR-RFLP method to investigation of forensic works, HLA-disease association and transplantation matching.
we could define HLA-class II genotype of DNA samples extracted from hairs, a small volume of whole blood, fresh or old dental pulp tissues at autopsy.
In HLA-disease association study, we could explain the susceptibility gene to autoimmune hepatitis in the Japanese patients. The basic amino acid at position 13, which is present only on the DR2 and DR4Bl molecules(Arg on DR2 and His on DR4), contributed to the susceptibility to this disease.
In bone marrow transplantation, we could explain that the DP disparity played an important role developing severe acute graft-versus-host disease.

Report

(3 results)
  • 1991 Annual Research Report   Final Research Report Summary
  • 1990 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Maeda,M.: "A simple and rapid method for HLA-DP genotyping by digestion of PCR-amplified DNA with allele-specific vestiction endonucleueses." Humar Immunology. 27. 111-121 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Uryuu,N.: "A simple and rapid method for HLA-DRB and-DQB typing by digestion of PCR amplified DNA with allele specific restuction endouucleases." Tissue Antigens. 35. 20-31 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] OTa,M: "Modified PCR-RFLP method for HLA-DPBl and DQAl genotyping" Tissue Antigens. 38. 60-71 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Nomura,N: "HLA-DQBl genotyping by modified PCR-RFLP method combined with group-specific primers" Tissue Antigens. 38. 53-59 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Ota,M: "HLA-DRBI genotyping by modified PCR-RFLP method comfined with group-specific primers." Tissue Antigens.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Ota,M: "A possible association between busic amino acids of position 13 of DRBI chains and autoimmunl hepututis" Immuno genetics.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 太田 正穂: "臨床検査提要" 金原出版社,

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Inoko,H and Ota,M: "Hand book for HLA tissue-typing Laboratories" CRC press Florida,

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Ota, M., INOKO, H., Honda, H. and Fukushima H.: "Application of HLA-DQA1 genotyping by PCR-RFLP method to forensic science." Act. Crim. Japon.(1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Ota, M., Seki, T., Kiyosawa, K., Furuta, S., Hino, K., Kondo, T., Fukushima, H., Tsuji, K and Inoko, H.: "A possible association between basic amino acids of position 13 of DRB1 chains and autoimmune hepatitis." Immunogenetics. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Ota, M., Seki, T., Fukushima, H., Tsuji, K. and Inoko, H.: "HLA-DRB1 genotyping by modified PCR-RFLP method combined with group-specific primers." Tissue Antigens. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Sugita, M., Kumagai, S., Ota, M., Inoko, H., Tsuji, K and Imura, H.: "Demonstration of requirement for self antigen in the activation of autoreactive T cells." International Immunology. 4. 119-124 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Nomura, N., Ota, M., Kato, S., Inoko, H. and Tsuji K.: "Severe acute graft-versus-host disease by HLA-DPB1 disparity in recombinant family of bone marrow transplantation between serologically HLA-identical siblings : An application of the polymerase chain reaction-restriction fragment length polymorphism method." Human Immunology. 32. 261-268 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Nomura, N., Ota, M., Tsuji, K. and Inoko, H.: "HLA-DQB1 genotyping by a modified PCR-RFLP method combined with group-specific primers." Tissue Antigens. 38. 53-59 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Ota, M., Seki, T., Nomura., Sugimura, K., Mizuki, N., Fukushima, H., Tsuji, K. and Inoko, H.: "Modified PCR-RFLP method for HLA-DPB1 and -DQA1 genotyping." Tissue Antigens. 38. 60-71 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Uryu, N., Maeda, M., Ota, M., Tsuji, K. and Inoko, H.: "A simple and rapid method for HLA-DRB and -DQB typing by digestion of PCR-amplified DNA with allele specific restriction endonucleases." Tissue Antigens. 35. 20-31 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Maeda, M., Uryu, N., Murayama, N., Ishi, H., Ota, M., Tsuji K. and Inoko, H.: "A simple and rapid method fro HLA-DP genotyping by digestion of PCR-amplified DNA with allele-specific restriction endonucleases." Human Immunology. 27. 111-121 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Ota,M.: "Modified PCR-RFLP method for HLA-DPB1 and-DQA1 genotyping." Tissue Antigens.38. 60-71 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Nomura,N.: "HLA-DQB1 genotyping by modified PCR-RFLP method combined with group-specific primers" Tissne Antigens.38. 53-59 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Nomura,N.: "Severe acute graft-uersus-host diseuse by HLA-DPB1 disparity in secombipant family of fone marrow traisplantation between seploge call HLA-identicll siblings:an application of the poly merase chain seaetion-sestnction fagmeht length polymor phism method." Human Immunology.32. 261-268 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Ota,M: "HLA-DRB1 genotyping by modified PCR-RFLP method combined with gwup-specific psimers." Tissue Antigens.

    • Related Report
      1991 Annual Research Report
  • [Publications] Ota,M: "A possible association between basic anino acids of position 13 of DRB1 chains and autoimmune heputitis." Immunogenetics.

    • Related Report
      1991 Annual Research Report
  • [Publications] Sugita,M: "Demonstration of the reguirement for self antigen in the activation of autoreactive Tcells." International Immunology.

    • Related Report
      1991 Annual Research Report
  • [Publications] 太田 正穂: "臨床検査法提要" 金原出版社,

    • Related Report
      1991 Annual Research Report
  • [Publications] Inoko,H.and Ota,M: "Handbook for HLA Tissne-Typing Laforatories" CRC press Florida,

    • Related Report
      1991 Annual Research Report
  • [Publications] 太田 正穂: "HLA抗原のDNAタイピング" 診断と治療. 78. 2383-2388 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 太田 正穂: "HLAクラスII抗原のDNAタイピング" 臨床免疫. 48. 582-590 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 太田 正穂: "PCR増幅DNAタイピングの検討" 今月の移植. 3. 445-454 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Uryu,N.: "A simple and rapid method for HLAーDRB andーDQB typing by digestion of PCRーamplified DNA with allele specific restriction endonucleuses" Tissue Antigens. 35. 20-31 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] OTA,M.: "Application of HLAーDQAI genetyping by PCRーRFLP method to forensid science" J.Legal Med.

    • Related Report
      1990 Annual Research Report
  • [Publications] OTA,M.: "Modified PCRーRFLP method for HLAーDPBI andーDQAI genotyping" Tissue Antigens.

    • Related Report
      1990 Annual Research Report
  • [Publications] 太田 正穂: "HLA検査技術マニュアル" 1日本医学館,

    • Related Report
      1990 Annual Research Report

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Published: 1990-04-01   Modified: 2016-04-21  

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