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Development of Crystal Structure Analysis Methods for Small Protein Crystals Using Anomalous Scattering.

Research Project

Project/Area Number 02558011
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 結晶学
Research InstitutionUNIVERSITY OF TOKYO

Principal Investigator

SATOW Yoshinori  University of Tokyo, Faculty of Pharmaceutical Sciences. Professor, 薬学部, 教授 (30150014)

Co-Investigator(Kenkyū-buntansha) NOGUCHI Shuji  University of Tokyo, Faculty of Pharmaceutical Sciences. Assistant, 薬学部, 助手 (60237823)
NAKASAKO Masayoshi  University of Tokyo, Faculty of Pharmaceutical Sciences. Assistant, 薬学部, 助手 (30227764)
AMEMIYA Yoshiyuki  National Laboratory for High Energy Physics, Photon Factory. Associate Professor, 放射光実験施設, 助教授 (70151131)
Project Period (FY) 1990 – 1992
Project Status Completed (Fiscal Year 1992)
Budget Amount *help
¥17,500,000 (Direct Cost: ¥17,500,000)
Fiscal Year 1992: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 1991: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1990: ¥13,700,000 (Direct Cost: ¥13,700,000)
KeywordsSmall Crystal / Protein / X-Ray Crystallography / Imaging Plate / Synchrotron Radiation / Anomalous Scattering / Immunoglobulin / Antibody / X線結晶構造解析法 / 蛋白質結晶学 / 回折強度測定法 / イメ-ジングプレ-ト / 多波長異常分散法
Research Abstract

The research objective is to develop an X-ray area detector system, utilizing Imaging Plate storage phosphor, for structural studies of small crystals of protein. This study aimed at development of structure determination theory and data processing methods by use of anomalous scattering. Computer programs developed here, as well as other existing structure refinements and graphics programs, were built into a complete system for anomalous diffraction studies.
A drum-scanner type X-ray detector was designed and built first. The detector implemented with highly efficient optical system of new design was combined with an Enraf-Nonius oscillation camera for a rotating anode X-ray generator. The detector can be used in oscillation data collection when it is mounted on the horizontal-type four-circle diffractometer system installed at beamline 14A of the Photo Factory synchrotron radiation source at National Laboratory for High Energy Physics. A preliminary application of the detector and program system to a Laue diffraction study was perfomed on the hen egg white lysozyme in order to evaluate feasibility of white radiation anomalous diffraction.
Three protein structures of very small crystals were determined based on the synchrotron data measured at several wavelengths. The structure of an Fv fragment from mouse anti-dansyllysine immunoglobulin IgG2a has been determined, finally at 1.6 A^^. resolution. The structure clearly elucidates its complementarity determining regions. Refinement of its crystalline complex with dasyllysine are also in progress. Furthermore, crystal structures of purine-specific ribonuclease U_2 at 1.8 A^^. resolution and of an Fab fragment of 3B44 anti-nitrophenol antibody of IgG12 at 3 A^^. have been determined. These have proved that the developed detector and the program system are widely applicable to structure determination of protein crystals as well as 50 mum.

Report

(4 results)
  • 1992 Annual Research Report   Final Research Report Summary
  • 1991 Annual Research Report
  • 1990 Annual Research Report
  • Research Products

    (31 results)

All Other

All Publications (31 results)

  • [Publications] 佐藤 能雅: "シンクロトロン放射光と蛋白質結晶解析" 蛋白質核酸酵素. 37. 567-579 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Wei Yang: "Structrue of Ribonuclease H Phased at 2A Resolution by MAD Analysis of Selenomethionyl Protein" Science. 249. 1398-1405 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoshinopri SATOW: "Optimized Anomalous Dispersion Studies" ACta Crystallographica. A46. G.15 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Logyin Chen: "Crystal Structure of an Electron-Transfer Complex between Methylamine Dehydrogenase and Amicyanin." Biochemistry. 31. 4959-4964 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoshio TAKEUCHI: "Refined Crystal Structure of the complex of Subtili-sin BPN and Streptomyces Subtilisin Inhibitor at 1.8A Resolution." J.Mol.Biol.221. 309-325 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] 佐藤 能雄: "タンパク質の活性,機能と進化の情報を与える立体構造" 現代化学. 245. 24-31 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] 佐藤 能雄: "「回析法による結晶構造解析の基礎」のうちPP,111-127の次を分担「放射光の利用-放射光X線の特徴と生体高分子の解析」" 日本結晶学会, 127 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoshinori Satow: "Protein Crystallography and Synchrotron Radiation." Tanpakushitsu Kakusan Kouso. 37. 567-579 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Wei Yang et al.: "Structure of Ribonuclease H Phased at 2 A^^. Resolution by MAD Analysis of Selenomethionyl protein." Science. 249. 1398-1405 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoshinori Satow: "Optimized Anomalous Dispersion Studies." Acta Crystallographica. A46. C-15 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Longuin Chen, at al.: "Crystal Structure of an Electron-Transfer Complex between Methylamine Dehydrogenase and Amicyanin." Biochemistry. 31. 4949-4964 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoshio Takeuchi: "Refined Crystal Structure of the complex of Subtilisin BPN' and Streptomyces Subtilisin Inhibitor at 1.8 A^^. Resolution." J. Molec. Biol.221. 309-325 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoshinori Satow: "Crystal Structures give Information about Activities, Functions, and Evolutions of Proteins." Chemistry Today (Gendaikagaku). 245. 24-31 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoshinori Satow: "Use of Synchrotron Radiation - Characteristics of Synchrotron Radiation and Macromolecular Crystallography." in Fundamentals in Crystal Structure Analysis by Diffraction Methods, Japanese Crystallogrphic Society. 111-127 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] 佐藤 能雅: "シンクロトロン放射光と蛋白質結晶解析" 蛋白質核酸酵素. 37. 567-579 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Longyin Chen: "Crystal Structure of an Electron-Transfer Complex between Methylamine Dehydrogenase and Amicyanin." Biochemistry. 31. 4959-4964 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Yoshinori Satow: "Optimized Anomalous Dispersion Studies." Acta Crystallographica. A46. C・15 (1990)

    • Related Report
      1992 Annual Research Report
  • [Publications] Wei Yang: "Structure of Ribonuclease H Phased at 2A^^。 Resolution by MAD Analysis of Selenomethionyl protein." Science. 249. 1398-1405 (1990)

    • Related Report
      1992 Annual Research Report
  • [Publications] Yasuo Takeuchi: "Molecular recognition at the active site of subtilisin BPN':Crystallographic studies using genetically engineered Proteinaceous inhibitor SSI(Streptomyces Subtilisin inhibitor)." Protein Engineering. 4. 501-508 (1991)

    • Related Report
      1992 Annual Research Report
  • [Publications] Shuji Noguchi: "Crystal Structure of Purine-specific Ribonuclease U_2 at 1.8^^。 Resolution."

    • Related Report
      1992 Annual Research Report
  • [Publications] 佐藤 能雅: "シンクロトロン放射光と蛋白質結晶解析" 蛋白質核酸酵素. 37. 567-579 (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] 佐藤 能雅: "タンパク質の活性,機能と進化の情報を与える立体構造" 現代化学. 245. 24-31 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Yosinori Satow: "Optiwized Anomalous Dispevsion Studies" Acta Crystallographica. A46. C-15- (1990)

    • Related Report
      1991 Annual Research Report
  • [Publications] Wei Yang: "Structure of Ribonuclease H Phased at 2A^^゚ Resolution by MAD Analysis of Selenomethionyl Protein" Science. 249. 1398-1405 (1990)

    • Related Report
      1991 Annual Research Report
  • [Publications] Janet L.Smith: "Multiwavelength Anomalous Diffraction Analysis of a Large Protein" Proc.of Isomorphous Replacement and Anomalous Scattering.

    • Related Report
      1991 Annual Research Report
  • [Publications] Yasuo Takeuchi: "Refined Crystal Structure of the Complex of Subtilisin BPN′ and Streptomyces Subtilisin Inhibitor at 1.8A^^゚ Resolution" J.Mol.Biol.221. 309-325 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] 佐藤 能雅 Yoshinori Satow: "Optimized Anomalous Dispersion Studies." Acta Crystallographica. A46. C-15 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 雨宮 慶幸 Yoshiyuki Amemiya: "Imaging Plates as XーRay Detectors." Acta Crystallographica. A46. C-7 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 佐藤 能雅: "X線構造解析による生体高分子の立体構造研究" 現代化学. (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Janet L.Smith: "Multiwavelength Anomalous Diffraction Experipents on Glutamate PRPP Amidotransferase." Acta Crystallographica. A46. C-17 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] Wei Yang: "Structure of Ribonuclease H Phased at 2A^^° Resolution by MAD Analysis of the Selenomethiony L protein." Science. 249. 1398-1405 (1990)

    • Related Report
      1990 Annual Research Report

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Published: 1990-04-01   Modified: 2016-04-21  

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