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Development and application of a system for 3-D measurement of biostructures by computational geometry

Research Project

Project/Area Number 02559004
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 広領域
Research InstitutionTohoku University

Principal Investigator

TAKAHASHI Tohru  Tohoku University, Research Institute for Tuberculosis and Cancer Department of Pathology, Professor, 抗酸菌病研究所, 教授 (10004590)

Co-Investigator(Kenkyū-buntansha) IWAMOTO Masatoshi  Tohoku Gakuin University, Faculty o Engineering Department of Applied Physics, A, 工学部, 助教授 (40128955)
CHIBA Ryoji  Tohoku University, Research Institute for Tuberculosis and Cancer Department of, 抗酸菌病研究所, 助手 (20207301)
TEZUKA Fumiaki  Tohoku University, Research Institute for Tuberculosis and Cancer Department of, 抗酸菌病研究所, 助教授 (60004892)
Project Period (FY) 1990 – 1991
Project Status Completed (Fiscal Year 1991)
Budget Amount *help
¥8,000,000 (Direct Cost: ¥8,000,000)
Fiscal Year 1991: ¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 1990: ¥6,200,000 (Direct Cost: ¥6,200,000)
KeywordsComputational Geometry / Three-D Biometry / Serial sections / Granulometry / spatial distance distribution / Topology / 計算機械何学 / 三次元生体組織構造 / 三次元生体組織計測 / 連続切片像 / 組織病理学 / 粒体の数量化 / 空間距離分布による生体計測
Research Abstract

Although the pathological studies deal with 3-dimensional biostructures such as the organs, tissues and cells of man and animals, the actural means of observation is confined to 2-dimensional sectional pictures, The tchniques of stereology, which is based on stochastic geometty, cannot work in most aspects of pathology where one is often unable to assimilate actual biostructures with pertinent geometric models. In view of this, we designed a system by which to perform 3-dimensional measurement of biostructures by computational geometry from structural data in putted from serial sections. We managed to establish algorithms for the following three tasks, in which, the system is ready to application to actual studies.
1. Computer-assisted granulometry : This is to obtain information on the number and size distribution of granular biostructures such as the cells, their nuclei or the islets of Langerhans. The computer scans through "sampling bricks, " a 3-dimensional sampling probe constructed in a tissue space containing granules and inputted from serial sections.
2. Expression of vascular pattern with the spatial distance distribution : An algorithm was devised to compare the pattern of 3-dimensional architecture with the distribution of distances from randomly positioned points to the structure of interest. The method was applied to the analysis of vasculature in livers with chronic hepatitis and cirrhosis, to quantitatively describe how the vascular arrangement deviates from the norm with the progress of cirrhogenesis.
3. Three-dimensional topological analysis : There are features of diseased organs that can be analyzed only in topological terms, such as the form of carchinoma cell nests. This requirement was met by developing an algorithm for computer-aided measurement of topological invariable (1st Betti number). We aere now finding a solution for the three-dimensional thinning of biostructures, which will give us a method to visualize their skeleton.

Report

(3 results)
  • 1991 Annual Research Report   Final Research Report Summary
  • 1990 Annual Research Report

Research Products

(17 results)

All Other

All Publications (17 results)

  • [Publications] 高橋 徹: "ThreeーD computational geometry:The pattern of vasculature in normal and diseased livers as expressed by the distribution of distance in space." Acta Stereologica. 11. (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 千葉 民彦: "Computerization of serialーsectionーbased granulometry using “sampling bricks"." Journal of Microscopy. 166. (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 菊池 俊樹: "肝組織の硬変化に伴う小葉改築に関する研究ーパラメ-タ化ならびに電算処理." 病理と臨床. 10. (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 斎藤 豊文: "三次元ユ-クリッド距離変換による肝組織連続切片顕微鏡像の解析" 医用電子と生体工学. 30. 257 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 高橋 徹: "計算機幾何学を用いた組織構造の三次元モルフォメトリ-." 日本病理学会会誌. 81. (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Tohru Takahashi et al.: "Three-D computational geometry : The pattern of vasculature in normal and diseased livers as expressed by the distribution of distance in space." Acta Sterelogica. 11. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Tamihiko Chiba et al.: "Computerization of serial-section-based granulometry using "sampling bricks. "" Journal of Microscopy.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Toshiki Kikuchi et al.: "Morphometric study on the re-organization of lobular structure of the liver in cirrhogenesis. Parametrization using techniques of computational geometry." Pathology and Clinical Medicine (in Japanese, with English summary).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Toyofumi Saito et al.: "An analysis of microscopi images of successive tissue sections of pathological samples using three-dimensional Euclidean distance transformation." Medical Electronics and Bioengineering (in Japanese). 30. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] Tohru Takahashi et al.: "Three-dimensional morphometry of tissue structures using computational geometry." Trans Jpn Soc Pathol (in Japanese). 81. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 高橋 徹: "Three-D computational qeometry: The pattern of vasculature in normal and diseased livers as expressed by the distribution of distance in space." Acta Stereologica. 11. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] 千葉 民彦: "Computerization of serial-section-based granulometry using “sampling bricks"" Journal of Microscopy. 166. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] 菊池 俊樹: "肝組織の硬変化に伴う小葉改築に関する研究-パラメ-タ化ならびに電算処理" 病理と臨床. 10. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] 斎藤 豊文: "三次元ユ-クリッド距離変換による肝組織連続切片顕微鏡像の解析" 医用電子と生体工学. 30. 257- (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] 高橋 徹: "計算機幾何学を用いた組織構造の三次元モルフォメトリ-" 日本病理学会会誌. 81. (1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] Chiba T.Chiba R,Takahashi T,Iwamoto M: "Computerrization of serialーsectionーbased granulometry using “Sampling bricks." Its application to histopathology." Journal of Microscopy. 164. (1991)

    • Related Report
      1990 Annual Research Report
  • [Publications] Takahashi T,Chiba R: "(分担執筆)Research of Pattern Formation (ed.by R.Takaki)" KTKーReidel Publishers/Tokyo, (1991)

    • Related Report
      1990 Annual Research Report

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Published: 1990-03-31   Modified: 2016-04-21  

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