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Research on Nucleic Acid Molecular Assembly for Gene Diagnosis.

Research Project

Project/Area Number 02650649
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field 高分子物性・高分子材料(含機械材料)
Research InstitutionKyoto Institute of Technology

Principal Investigator

MURAKAMI Akira  Kyoto Institute of Technology, Associate Professor, 繊維学部, 助教授 (60210001)

Co-Investigator(Kenkyū-buntansha) MAKINO Keisuke  Kyoto Institute of Technology, Professor, 繊維学部, 教授 (50159141)
Project Period (FY) 1990 – 1991
Project Status Completed (Fiscal Year 1991)
Budget Amount *help
¥2,300,000 (Direct Cost: ¥2,300,000)
Fiscal Year 1991: ¥300,000 (Direct Cost: ¥300,000)
Fiscal Year 1990: ¥2,000,000 (Direct Cost: ¥2,000,000)
KeywordsGene Diagnosis / Fluorescent-labeled DNA-prbe / Spin-labeled DNA-probe / Fluorescence Depolatization / Fluorescence Anisotropy / ESR Spectrum / M13 Phage DNA / DNA-prove Method / 蛍光ラベルDNAプロ-ブ / 核酸分子集合体 / 蛍光ラベル / 電子スピンラベル / 蛍光偏光解消法
Research Abstract

This research project has focussed on a new technology for gene diagnosis. Several fatal diseases such as AIDS, ATL, cancer, and so on are regarded as genetic diseases and it is hard to detect them before their symptoms appear. Among methods for gene diagnosis, DNA-probe methodology was thought to be very suitable for such diseases and adopted in this research. The methodlogy is based on the nucleic acid chemistry and gene informations so far reported. As a tool for DNA-probe methodology, several nucleic acid analogs labeled with functional groups were synthesized. They are fluorescent-labeled nucleic acid analogs(F-DNA-probe)and electrospin-labeled ones(S-DNAprobe). When the former analogs were used, measured were fluorescence depolarization spectra, which sensitively reflect the molecular motion offluorescent materials, namely of nucleic acid analogs. For the latter, ESR spectra change, especially line-width change, were monitored. When F-DNA-probe was mixed with its complementary oligonucleotide, anisotropy of fluorescence changed remarkably and the change was molecular weight dependent until 10000. When S-DNA-probe was mixed with its complementary oligonucoleotide, the line-width of the ESR spectrum appreciably increased. These results indicate that both DNA-probes are suitable to detect the hybrid formation in solution phase, namely the presence of target genes.
In order to demonstrate the ability of such probes to detect natural DNAs, M13-phage DNA as well as the deletion mutant of M13-ohage DNA were chosen. The probes efficiently distinguished the two DNAs depending on their sequences. These results suggest that suitably labeled nucleic acids can be used as tools to detect target DNA in solution using fluorescence depolarization spectrum and electron spin resonance spe : ctrurb. And it is promising that these methodology can be used for automatic machine for gene diagnosis.

Report

(3 results)
  • 1991 Annual Research Report   Final Research Report Summary
  • 1990 Annual Research Report
  • Research Products

    (29 results)

All Other

All Publications (29 results)

  • [Publications] H.Ozaki: "Syntheses and properties of oligoadenylate analogs containing stereoregulated phosphoromorphoridate and phosphodiester linkages in an alternating manner." Bull.Chem.Soc.Japan. 63. 1929-1936 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 村上 章: "機能性アンチセンスDNAの化学合成." 有機化学協会誌. 48. 180-193 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 村上 章: "ラベルDNAブロ-ブによる遺伝子自動分析" 病態生理. 9. 851-857 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] A.Murakami,: "Fluorescein-labeled oligonucleotide probe: Detection of hybrid formation in solution by fluorescence polarization spectroscopy." Nucleic Acids Res.19. 4097-4102 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K.Makino,: "Polymer-bound electron sin for enzyme assay in a DNA Probe Method." Reactive Polymers. 15. 177-183 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 村上 章: "遺伝子を制御するアンチセンスDNA法" 化学. 46. 681-684 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] S.Nagahara: "Spin-labeled oligonucleotides site specifically labeled at internucleotide linkage.Separation of stereoisomeric probes and EPR spectroscopical detection of hybrid formation in soliution." Nueleosides & Nucleotides.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K.Makino: "Detection of specific base sequences in solution using DNA probes labeled with D-and/or 15N-substituted spin-labels." Free Radical Res.Comms.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] A.Murakami: "Oligonucleotides site-specifically spin-labeled at 5'-terminal or internucleotide linkage and their use in gene diagnosis." Free Radidcal Res.Comms.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] 牧野 圭祐: "「1本鎖DNAの精製」(「タンパク質・ペプチドの高速液体クロマトグラフィ(II)」、池中 徳治、崎山 文夫編)" 化学同人, 328 (1990)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] H. Ozaki: "Syntheses and properties of oligoadenylate analogs containing stereoregulated phosphoromorphoridate and phosphodiester linkages in an alternating manner." Bull. Chem. Soc. Japan. 63. 1929-1936 (1990)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] A. Murakami,: "Fluorescein-labeled oligonucleotide probe : Detection of hybrid formation in solution by fluorescence polarization spectroscopy" Nucleic Acids Res. 19. 4097-4102 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K. Makino: "Polymer-bound electron sin for enzyme assay in a DNA Probe Method" Reactive Polymers. 15. 177-183 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] S. Nagahara: "Spin-labeled oligonucleotides site specifically labeled at internucleotide linkage. Separation of stereoisomeric probes and EPR spectroscopical detection of hybrid formation in solution" Nucleosides & Nucleotides. (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] K. Makino: "Detection of specific base sequences in solution using DNA probes labeled with D- and/or 15N-substituted spin-labels." Free Radical Res. Comms.(1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] A. Murakami: "Oligonucleotides site-specifically spin-labeled at 5'-terminal or internucleotide linkage and their use in gene diagnosis." Free Radical Res. Comms.(1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1991 Final Research Report Summary
  • [Publications] H.Ozaki: "Syntheses and properties of oligoadenylate analogs containing stereoregulated phosphoromorphoridate and phosphodiester linkages in an alternating manner." Bull.Chem.Soc.Japan. 63. 1929-1936 (1990)

    • Related Report
      1991 Annual Research Report
  • [Publications] 村上 章: "機能性アンチセンスDNAの化学合成." 有機化学協会誌. 48. 180-193 (1990)

    • Related Report
      1991 Annual Research Report
  • [Publications] 村上 章: "ラベルDNAプロ-ブによる遺伝子自動分析" 病態生理. 9. 851-857 (1990)

    • Related Report
      1991 Annual Research Report
  • [Publications] A.Murakami.: "Fluoresceinーlabeled oligonucleotide probe:Detection of hybrid formation in solution by fluorescence polarization spectroscopy." Nucleic Acids Res.19. 4097-4102 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] K.Makino: "Polymerーbound electron sin for enzyme assay in a DNA Probe method." Reactive Polymers. 15. 177-183 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] 村上 章: "遺伝子を制御するアンチセンスDNA法" 化学. 46. 681-684 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] S.Nagahara: "Spinーlabeled oligonucleotides site specifically labeled at internucleotide linkage.Saparation of stereoisomeric probes and EPR spectroscopical detection of hybrid formation in solution." Nucleosides&Nucleotides.

    • Related Report
      1991 Annual Research Report
  • [Publications] K.Makino: "Detection of specific base sequences in solution using DNA probes labeled with Dーand/or 15N substituted spinーlabels." Free Radical Res.Comms.

    • Related Report
      1991 Annual Research Report
  • [Publications] A.Murakami: "Oligonucleotides siteーspecifically spinーlabeled at 5'ーterminal or internucleotide linkage and their use in gene diagnosis." Free Radical Res.Comms.

    • Related Report
      1991 Annual Research Report
  • [Publications] 牧野 圭祐: "「1本鎖DNAの精製」(「タンパク質・ペプチドの高速液体クロマトグラフィ(II)」、池中徳治、崎山文夫編)" 化学同人, 328 (1990)

    • Related Report
      1991 Annual Research Report
  • [Publications] 村上 章: "ラベルDNAプロ-ブによる遺伝子自動分析" 病態生理. 9. 851-857 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 村上 章: "ラベルDNAプロ-ブによる遺伝子検索" INTER;研究論文集'90. 2. 176-176 (1990)

    • Related Report
      1990 Annual Research Report
  • [Publications] 村上 章: "Structural analysis of nucleic acids by labeled oligonucleotides" Nucleic Acids Research,Symposium Series. 22. 27-28 (1990)

    • Related Report
      1990 Annual Research Report

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Published: 1990-04-01   Modified: 2016-04-21  

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