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POSITIONAL CLONING OF CANDIDATE GENES

Research Project

Project/Area Number 03404029
Research Category

Grant-in-Aid for General Scientific Research (A)

Allocation TypeSingle-year Grants
Research Field Neurology
Research InstitutionTOKYO MEDICAL AND DENTAL UNIVERSITY

Principal Investigator

MIYATAKE Tadashi  TOKYO MEDICAL AND DENTAL UNIVERSITY DEPARTMENT OF NEUROLOGY,PROFESSOR, 神経内科, 教授 (50048998)

Co-Investigator(Kenkyū-buntansha) UCHIHARA Toshiki  TOKYO MEDICAL AND DENTAL UNIVERSITY DEPARTMENT OF NEUROLOGY,INSTRUCTOR, 神経内科, 助手 (10223570)
YANAGISAWA Katsuhiko  TOKYO MEDICAL AND DENTAL UNIVERSITY DEPARTMENT OF NEUROLOGY,INSTRUCTOR, 神経内科, 助手 (10230260)
R.C.PARK MATSUMOTO  TOKYO MEDICAL AND DENTAL UNIVERSITY DEPARTMENT OF NEUROLOGY,INSTRUCTOR (60165917)
辻 省次  新潟大学, 脳研究所・神経内科, 教授 (70150612)
Project Period (FY) 1991 – 1992
Project Status Completed (Fiscal Year 1992)
Budget Amount *help
¥27,400,000 (Direct Cost: ¥27,400,000)
Fiscal Year 1992: ¥6,000,000 (Direct Cost: ¥6,000,000)
Fiscal Year 1991: ¥21,400,000 (Direct Cost: ¥21,400,000)
KeywordsHEREDITARY NEURODEGENERATIVE DISEASE / REVERSE GENETICS / hn cDNA / POSITIONAL CLONING / COSMID CLONES / ADRENOLEUKODYSTROPHY / X CHROMOSOME / XQ28 / 副腎白質ジストロフィー / 遺伝学 / クロ-ニング / ゲノム / リバ-スジェネティックス / ポジショナルクロ-ニング / Xg28
Research Abstract

By positional cloning, we attempted to identify the disease genes of hereditary neurological diseases mapped to Xq28 region including Adrenoleukodystrophy (ALD) and Emery-Dreifuss muscular dystrophy. The cosmid genomic library was constructed from a somatic cell hybrid. X3000-11.1, which carried Xq24-qter as an only human chromosome, and 1,784 cosmid clones carrying various part of human Xq24-qter region were isolated. Four hundreds of the 1,784 cosmids were identified to be Not I linking clones, and 19 independent clusters of the linking clones were regionally mapped to Xp28 region. We also identified a cDNA (QM gene) located to Xq28, which demonstrated an altered mRNA level in nontumorigenic Wilm's microcell hybrid cell line, and detalied analysis of the genomic structure of the QM gene was also performed. Southern blot analyses revealed no gross genetic alterations of the genomic DNAs from 24 ALD patients using the QM cDNA as the probe.
To isolate the transcribed sequences located in a particular chromosomal region (Xq28), the two major strategies were established. By utilizing human-specific repetitive sequences in heterogeneous nuclear RNA-complementary cDNA (hn cDNA) derived from the somatic cell hybrid,X3000-11.1, 11 transcribed sequences at Xq24-qter region were isolated Norther blot analysis revealed a hn cDNA clone was exclusively expressed in brain. The result indicates that the strategy is also useful to isolate the tissue-specific gene as well as house-keeping gene. We also tried another strategy to isolate the tissue-specific and chromosome-specific genes by utilizing the hybridization between cloned cosmid genomic DNAs and human brain cDNA clones. Subsequently, we isolated a new cDNA which was predominantly expressed in brain and skeletal muscle. The data indicates that the method was also highly useful to identify the tissue-specific genes.

Report

(3 results)
  • 1992 Annual Research Report   Final Research Report Summary
  • 1991 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] Kondo R.: "Identification of a mutation in the arylsulfatase A gene of a patient with adult-type metachromatic liukodystrophy." Am.J.Hum.Genet.48. 971-978 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Tanaka H.: "Linkage analysis of juvenile parkinsonism to tyrosine hydroxylase gene locus on chromosome ll." Neurology. 41. 719-722 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Naruse S.: "Mis-sense mutation yal-Ile in exon 17 of amyloid precursor protein gene in Japanese familial Alzheimer's disease." Lancet. 337. 978-979 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoneda M.: "Simple detection of tRNALys mutation myoclonus epilepsy associated with ragged-red fibers (MERRF) by polymerase chin reaction with a mismatched primer." Neurology. 41. 1838-1840 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yamauchi T.: "Bam HI polymorphism at N-acetyl-alpha-galactosaminidase locus (NAGA)." Nuc.Acids Res.19. 2518 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Hardy J.: "Molecular classification ofAlzheimer's disease." Lancet. 337. 1342-1343 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kobayashi H.: "Construction of spinal cord cDNA library and application for subtractive cloning spinal-cord specific cDNAs." J.Mol.Neurosci.3. 59-64 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Tanno Y.: "Quantitation of mitochondrial DNA carrying tRNALys mutation in MERRF patients." Biochem.Biophys.Res.Commun.179. 880-885 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kaneko K.: "A new RFLP locus D8S163 maps to human chromosome 8pter-8p22." Nuc.Acids Res.19. 6059 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kaneko K.: "Genomic organization of a CDNA (QM) demonstrating analtered mRNA levelin nontumorigenic Wilm's microcell hybrid cells and its location to Xq28." Hum.Mol.Genet.1. 529-533 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Wakamatsu N.: "A novel exon mutation in the human beta-hexosaminidase beta subunit gene affects 3' splice site selection." J.Biol.Chem.267. 2406-2413 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Tsuji S.: "Molecular cloning of human grwth inhibitory factor cDNA and its down-regulation in Alzheimer's disease." EMBO J.11. 4843-4850 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kondo R: "Identification of a mutation in the arylsulfatase A gene of a patient with adult-type metachromatic leukodystrophy" Am J Hum Genet. 48. 971-978 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Tanaka H: "Linkage analysis of juvenile parkinsonism to tyrosine hydroxylase gene locus on chromosome 11." Neurology. 41. 719-722 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Naruse S.: "Mis-sense mutation Val*Ile in exon 17 of amyloid precursor protein gene in Japanese familial Alzheimer's disease." Lancet. 337. 978-979 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yoneda M.: "Simple detection of tRNA^<Ly5> mutation in myoclonus epilepsy associated with regged-red fibers (MERRF) by polymerase chain reaction with a mismatched primer." Neurology. 41. 1838-1840 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yamauchi T: "BamHI polymorphism at N-acetyl-alpha-galactosaminidase locus (NAGA)." Nuc Acids Res. 19. 2518 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Hardy J.: "Molecular classification of Alzheimer's disease." Lancet. 337. 1342-1343 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kobayashi H.: "Construction of spinal cord cDNA library and application for subtractive cloning of spinal-cord specific cDNAs." J Mol Neurosci. 3. 59-64 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Tanno Y.: "Quantitation of mitochondrial DNA carrying tRNA^<Ly5> mutation in MERRF patients." Biochem Biophys Res Commun. 179. 880-885 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kaneko K.: "A new RFLP locus D8S163 maps to human chromosome 8pter-8p22." Nuc Acids Res. 19. 6059 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kaneko K.: "Genomic organization of a cDNA (QM) demonstrating an altered mRNA level in nontumorigenic Wilm's microcell hybrid cells and its location to Xq28." Hum Mol Genet. 1. 529-533 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Wakamatsu N.: "A novel exon mutation in the human beta subunit gene affects 3' splice site selection." J Biol Chem. 267. 2406-2413 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Tsuji S.: "Molecular cloning of human growth inhibitory factor cDNA AND its down-regulation in Alzheimer's disease." EMBO J. 11. 4843-4850 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kaneko K.: "Genomic organization of a cDNA(QM)demonstrating an altered mRNA leyel in notumorigentic Wilm's microcell hybrid cells and its location to Xq28" Hum.Mol.Genet.1. 529-533 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Wakamatsu.N.: "A novel exon mutation in the human beta-hexosaminidase beta subunit gene affect 3' splice site selection." J.Biol.Chem.267. 2406-2413 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Tsuji S.: "Molecular cloning of human growth inhibitory factor cDNA and its dowm-regulation in Alzheimer's disease." EMBO J.11. 4843-4850 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Kondo,R.: "Identification of a mutation in the arylsulfatase A gene of a patient with adultーtype metachromatic leukodystrophy." Amer.J.Hum.Genet.48. 971-978 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Tanaka,H.: "Linkage analysis of juvenile Parkinsonism to tyrosine hydroxylase gene locus on chromosome 11." Neurology. 41. 719-722 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Naruse,S.: "Misーsense mutation ValーIle in exon 17 of amyloid precursor protein gene in Japanese familial Alzheimer's disease." Lancet. 337. 978-979 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Kobayashi,H.: "Construction of spinal cord cDNA library and application for subtractive cloning of spinal cord specific cDNAs." J.Mol.Neurosci. 3. 59-64 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Tanno,Y.: "Quantitation of mitochondrial DNA carrying tRNA Lys mutation in MERRF patients." Biochem.Biophys.Res。Commun.179. 880-885 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Kaneko,K.: "A new RFLP locus D8S163 maps to human chromosome 8pterー8p22。" Nucl.Acids Res.19. 6059 (1991)

    • Related Report
      1991 Annual Research Report

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Published: 1991-04-01   Modified: 2016-04-21  

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