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The complete sequence and gene expression of a liverwort, Marchantia polymorpha mitochondrial genome.

Research Project

Project/Area Number 03454065
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 応用生物化学・栄養化学
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

OHYAMA Kanji  Kyoto Univ., Faculty of Agriculture, Professor, 農学部, 教授 (40135546)

Project Period (FY) 1991 – 1993
Project Status Completed (Fiscal Year 1993)
Budget Amount *help
¥6,200,000 (Direct Cost: ¥6,200,000)
Fiscal Year 1993: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 1992: ¥2,400,000 (Direct Cost: ¥2,400,000)
Fiscal Year 1991: ¥2,700,000 (Direct Cost: ¥2,700,000)
KeywordsMarchantia polymorpha / Chloroplast genome / Nuclear genome / Plant cell / Organelle / Complete nucleotid sequence / Genetic information system / Mitochondrial genome
Research Abstract

Plant cell has two organelles, mitochondria and chloroplast, and they have their own DNA.To elucidate the genetic information systems of both organelles, we have already determined the complete nucleotide sequence of the liverwort chloroplast DNA and analyzed them. Plant mitochondria genomes are variable in size and more complex than mammalian and fungal mitochondrial genomes. These feature hamper the determination of the complete gene organization of the mitochondrial genomes of plant species. So, we have determined the complete sequence of the liverwort mitochondrial DNA and detected 96 possible gene in the sequence of 186,608 basepairs. These included genes for three species of ribosomal RNA, 29 genes for 27 species of transfer RNA and 31 open reading frames(ORFs) for functionally known proteins and 33 ORFs predicted as possible genes. We also found two pseudogenes. So far, 32 introns have been found in the coding regions of 17 genes. Even after allowing for wobbling and modification of the anticodons, two species of tRNA genes that are required for reading all codons in the liverwort mitochondrial genome have not been detected. They may be nulear-encoded and imported from the cytoplasm. RNA editing reported in mitochondrial genomes from several species of plants is apparently lacking in liverwort mitochondria. There were two major clusters of the ribosomal protein genes, in which the genes were arranged in a similar order to the E.coli operons. This observation strongly supports the endsymbiont hypothesis, which postulated that the organelles of eukaryotes originated from pokaryotic ancestors in evolution.

Report

(4 results)
  • 1993 Annual Research Report   Final Research Report Summary
  • 1992 Annual Research Report
  • 1991 Annual Research Report
  • Research Products

    (14 results)

All Other

All Publications (14 results)

  • [Publications] E.Ohta: "'Group 1 introns in the liverwort mitochondrial genome:the gene coding for subunit 1 of cytochrome oxidase shares five intron positions with its fungal counterparts." Nucl.Acids.Res.21. 1297-1305 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] N.Nozato: "'Cotranscriptional expression of mitochondrial genes for subunits of NADH dehydrogenase,nad5,nad4,nad2,in Marchantia polymorpha.'" Mol.Gen.Genet.237. 343-350 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Yamato: "'Occurrence and transcription of genes for nad1,nad3,nad4L,and nad6,coding for NADH dehydrogenase subunits 1,3,4L,and 6,in liverwort mitochondria.'" Curr.Genet.23. 526-531 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] E.Ohta, K.Oda, K.Yamato, Y.Nakamura, M.Takemura, N.Nozato, K.Akashi, K.Ohyama and F.Michel: "'Group I introns in the liverwort mitochondrial genome : the gene coding for subunit 1 of cytochrome oxidase shares five intron positions with its fungal counterparts'" Nucl.Acids Res.21. 1297-1305 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] N.Nozato, K.Oda, K.Yamato, E.Ohata, M.Takemura, K.Akashi, H.Fukuzawa and K.Ohyama: "'Contranscriptional expression of mitochondorial genes for subunits of NADH dehydrogenase, nad5, nad4, nad2, in Marchantia polymorpha.'" Mol.Gen.Genet.237. 343-350 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Yamato, N.Nozato, K.Oda, E.Ohta, M.Takemura, K.Akashi and K.Ohyama: "'Occurrence and transcription of genes for nad1, nad3, mad4L, and nad6, coding for NADH dehydrogenase subunits 1, 3, 4L, and 6, in liverwort mitochondria.'" Curr.Genet.23. 526-531 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] E.Ohta: "'Group I introns in the liverwort mitochondrial genome:the gene coding for subunit 1 of cytochrome oxidase shares five intron positions with its fungal counterparts.'" Nucl.Acids.Res.21. 1297-1305 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] N.Nozato: "'Cotranscriptional expression of mitochondrial genes for subunits of NADH dehydrogenase,nad5,nad4,nad2,in Marchantia polymorpha.'" Mol.Gen.Genet.237. 343-350 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] K.Yamato: "'Occurrence and transcription of genes for nad1,nad3,nad4L,and nad6,coding for NADH dehydrogenase subunits 1,3,4L,and 6,in liverwort mitochondria." Curr.Genet.23. 526-531 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Oda,K: "Mitochondrial DNA of Marchantia polymorpha as a single circular form with no incorporation of foreign DNA" Biosci.Biotech.Biochem.56. 132-135 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Oda,K.: "Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA" J.Mol.Biol.223. 1-7 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Takemura,M.: "Gene clusters for ribosomal proteins in the mitochondrial genome of a liverwort,Marchantia polymorpha" Nucl.Acids.Res.20. 3199-3205 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Oda,K.: "Transfer RNA genes in the mitochondrial genome from a liverwort,Marchantia polymorpha:the absence of chloroplast-like tRNAs" Nucl.Acids.Res.20. 3773-3777 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Oda,K.: "Mitochondrial DNA Marchantia polymorpha as a single circular from with no incorporation of foreign DNA" Biosci.Biotech.Biochem.,. 56. 132-135 (1992)

    • Related Report
      1991 Annual Research Report

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Published: 1991-04-01   Modified: 2016-04-21  

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