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Structural Feature of the Nucleotide-Binding Site in Enzymes

Research Project

Project/Area Number 03454539
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 物質生物化学
Research InstitutionOsaka University

Principal Investigator

FUKUI Toshio  Osaka Univ., Inst.Sci.Ind.Res., Professor, 産業科学研究所, 教授 (90029843)

Co-Investigator(Kenkyū-buntansha) TAGAYA Mitsuo  Osaka Univ., Inst.Sci.Ind.Res., Research Assistant, 産業科学研究所, 助手 (30179569)
TANIZAWA Katsuyuki  Osaka Univ. Inst.Sci.Ind.Res., Associate Professor, 産業科学研究所, 助教授 (20133134)
Project Period (FY) 1991 – 1992
Project Status Completed (Fiscal Year 1992)
Budget Amount *help
¥6,100,000 (Direct Cost: ¥6,100,000)
Fiscal Year 1992: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 1991: ¥5,000,000 (Direct Cost: ¥5,000,000)
KeywordsUDPG PYROPHOSPHORYLASE / ATPase / NUCLEOTIDE-BINDING SITE / ACTIVE SITE IN ENZYME / LYSYL RESIDUE / ADENYLATE KINASE / ジャガイモ酵素 / UDPGピロホスホリラ-ゼ / アデニレ-トキナ-ゼ / ロイシン
Research Abstract

Previously, we have designed and synthesized a new type of affinity labeling reagents specific for the lysyl residue located in the nucleotide- or sugar nucleotide-binding site in proteins, and also applied site-directed mutagenesis for amino acid residues in the glycine-rich region. Under the present title of project, we have obtained the following results.
1) By affinity labeling of potato tuber UDPG pyrophosphorylase with reagents having different structures, we have identified five lysyl residues (Lys-263, Lys-329, Lys-367, Lys-409, and Lys-410) located around the UDPG molecule at the active site of the enzyme. Of these lysyl residues, Lys-367 may participate directly in the catalytic function, whereas Lys-329 and Lys-263 play the roles, respectively, in the binding of PPi and in the conformational changes upon binding of UDPG to the enzyme.
2) We have prepared muatant enzymes of chicken skeletal muscle adenylate kinase in which Lys-66 is replaced by various other amino acids. Based on the properties of those mutant enzymes, we provide evidence for the role of Lys-66 in the recognition of the adenine ring of the substrate AMP.
3) In the chemical modification of leucine dehydrogenase of Bacillus stearothermophilus, we obtained the results suggesting the participation of Lys-80 in the catalytic function of this enzyme.
4) The catalytic site of Escherichia coli F1-ATPase was probed using areactive ATP analogue, adenosine triphosphopyridoxal. In the absence of Mg^<2+>, the alphaLys-201 and betaLys-155 residues were the major target, whereas, in the presence of the ion, predominant labeling was observed in the betaLys-155 and betaLys-211 residues. The results suggest that those three residues are located close together near the gamma-phosphate group of ATP bound to the catalytic site, and that the two beta residues and the gamma-phosphate group become closer to each other in the presence of Mg^<2+>.

Report

(3 results)
  • 1992 Annual Research Report   Final Research Report Summary
  • 1991 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] Yasuaki Kazuta: "Probing the Pyrophosphate-Binding Site in Potato Tuber UDP-Glucose Pyrophosphorylase with Pyridoxal Diphospate" Protein Sci.2. 119-125 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Takahiro Matsuyama: "Lucine Dehydorogenase from Bacillus stear-othermophilus Identification of Active Site Lysine by Modificaion with Pyridoxal Phosphate." J.Biochem. 112. 258-265 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kenji Ida: "Catalytic Site of F1-ATPase of Escheri-chia coli." J.Biol.Chem.266. 5424-5429 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Toshihide Okajima: "Role of Leucine 66 in the Asymmet-ric Recognition of Substrates in Chkeu Mascle Adenylate Kinase." J.Biol.Chem. 266. 1142-1147 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yasuaki Kazuta: "Identification of Lysyl Residues Located at the Substrate-Binding Site in UDP-Glucose Pyrophosphorylase from Potato Tuber." Biochemistry. 30. 8541-8545 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Takuya Katube: "Expression in Escherichia coli of UDP-Glucose Pyrophosphorylase cDNA and Functional Assessment of Five Lysyl Residues Located at the Substrate-Binding Site." Biochemistry. 30. 8546-8551 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kazuta,Y., Tagaya,M., Tanizawa,K., & Fukui,T.: "Probing the Pyrophosphate-Binding Site in Potato Tuber UDPG Pyrophosphorylase with Pyridoxal Diphosphate" Protein Sci.2. 119-125 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Matsuyama,Y., Soda,K., Fukui,T., & Tanizawa,K.: "Leucine Dehydrogenase from Bacillus stearothermophilus: Identification of Active Site Lysine" J. Biochem.112. 258-265 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Ida,K., Noumi,T., Maeda,M., Fukui,T., & Futai,M.: "Catalytic Site of F1-ATPase of Escherichia coli" J. Biol. Chem.266. 5424-5429 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Okajima,T., Tanizawa,K., Yoneya,T., & Fukui,T.: "Role of Leucine 66 in the Asym-metric Recognition of Substrates in Chic-ken Muscle Adenylate Kinase" J. Biol. Chem.266. 1142-1147 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kazuta,Y., Omura,Y., Tagaya,M., Nakano,K., & Fukui,T.: "Identification of Lysyl Residues Located at the Substrate-Binding Site in UDPG-Pyrophosphorylase from Potato Tuber" Biochemistry. 30. 8541-8545 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Katsube,T., Kazuta,Y., Tanizawa,K., & Fukui,T.: "Expression in Escherichia coli of UDPG Pyrophosphorylase cDNA and Functional Assessment of Five Lysyl Residues Located at the Substrate-Binding Site" Biochemistry. 30. 8546-8551 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Kazuta,Y., Tanizawa,K., & Fukui,T.: "Comparative Affinity Labeling with Reactive UDPG Analogues: Possible Locations of Five Lysyl Residues around the Substrate Bound to Potato Tuber UDPG Pyrophosphorylase" J. Biochem.110. 708-713 (1991)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] Yasuaki Kazuta: "Probing the Pyrophosphate-Binding Site in Potato Tuber UDP-Glucose Pyrophosphorylase with Pyridoxal Diphosphate." Protein Sci.2. 119-125 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] Takahiro Matsuyama: "Lucine Dehydorogenase from Baciltus stear-othermophilus:Identification of Active Site Lysine by Modificaion with Pyridoxal Phosphate." J.Biochem. 112. 258-265 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Kenji Ida: "Catalytic Site of Fl-AtPase of Escheri-chia coli." J.Biol.Chem.266. 5424-5429 (1991)

    • Related Report
      1992 Annual Research Report
  • [Publications] Toshihide Okajima: "Role of Leucuie66 in the Assymmetric Rewgnition of Substrates in Chicken Muscle Adenylate Kinage" J.Biol.Chem.266. 11442-11447 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Yasuaki Kazuta: "Identification of hygyl Regidues Located at the SubstrateーBinding Site in UDPーGlucose Pyrophosphorylase" Biochemistry. 30. 8541-8545 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Takuya Katsube: "Expression in Escherichia coli of UDPーGlucose Pyrophosphorylase cDNA from Potato Tuber and Functional Assessment of the Five Lysyl Residues" Biochemistry. 30. 8546-8551 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Yasuaki Kazuta: "Comparative Affinity labeling with Reactive UDPーGlucose Analogues:Possible Locations of Five Lysyl Resides around the Substrate" J.Biochem.110. 708-713 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] Toshio Fukui: "Probing the Active Site in Glycogen Synthase by Affinity Labelings with Nucleotidyl Derivatives Pynidoxal Phosphate" Enzymes Depenbent on Pynidoxal Phosphate and Other Carbonyl Compounds as Cofactors. 629-632 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] 谷澤 克行: "アデニル酸キナ-ゼ基質認識" 蛋白質核酸酵素(臨時増刊). 37. 359-370 (1992)

    • Related Report
      1991 Annual Research Report

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Published: 1991-04-01   Modified: 2016-04-21  

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