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Computational Chemical Software to Aid in the Structural Determination of Organic Molecules by Means of Nuclear Magnetic Resonance

Research Project

Project/Area Number 03554020
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 有機化学一般
Research InstitutionToyohashi University of Technology

Principal Investigator

OSAWA Eiji  Toyohashi University of Technology, Faculty of Engineering, Professor, 工学部, 教授 (40001763)

Co-Investigator(Kenkyū-buntansha) HAMADA Tatsuo  Hokkaido University, Faculty of Pharmaceuticals, Associate Professor, 薬学部, 助教授 (40001979)
YONEMITSU Osamu  Hokkaido University, Faculty of Pharmaceuticals, Professor, 薬学部, 教授 (60001038)
Project Period (FY) 1991 – 1992
Project Status Completed (Fiscal Year 1992)
Budget Amount *help
¥16,800,000 (Direct Cost: ¥16,800,000)
Fiscal Year 1992: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1991: ¥15,300,000 (Direct Cost: ¥15,300,000)
KeywordsSolution conformation / Computational chemistry / Nuclear magnetic resonance / Conformational space search / Chemical algorithm / Molecular mechanics / Structure determination / Organic chemistry / 配列空間探索 / 計算化学 / ビシナル結合定数 / 配座自動発生
Research Abstract

(1) Program CONFLEX for Conformational Sparch of Flexible Molecules The program was completed within the year 1992 and has been deposited in the Japan Chemistry Program Exchange for public use. The algorithm of CONFLEX is unique in that the Program not only effects systematic rotations to the rotatable bonds, but also simulates elementary processes occurring in the thermal conformational interconversions. A remarkable aspect of this algorighm is its ability of confining the search to within the low-energy region and still capable of finding new domains in the conformational space by crossing over energy barriers. One can arbitrarily control the extent of search depending on the nature of computer resource and the purpose of search. Careful tests revealed that CONFLEX is superior in its performace than any other existing programs. Thereupon the program has been applied to a number of pending problems including the origin of regiospecific O-methylation reaction of Erythromycins, the caus … More e of failure in taxane synthesis and other problems involving macrocyclic conformation and macrocyclization reactions.
(2) Program for Universal Molecular Mechanics Calculations Within the year 1992, we have been able to complete that part of molecular mechanics force field program which takes care of the careful evaluation of solvent effects on intramolecular steric interactions. The original idea of this part rests on Clark Still, Columbia University, but we have modified the original formulations to a considerable extent. Technically speaking, we use the first and second analytical derivatives of molecular volume, not the molecular surface as other investigators does, as the key variables. This part is general and can be implemented in other force field programs.
(3) Program 3JHH2 for Calculation of Vicinal Coupling Constants The present version of program 3JHH2 has been critically analyzed, together with other known algorithmus for computing coupling constants, for its performance over a variety of organic molecules. As it turned out, all of the presently known methods have unexpectedly low precision in reproducing and predicting coupling constants. Unexpectedly, the greatest source of error is the experimental precision. It is concluded that a new approach is necessary in the use of Karplus equation. Based on the conclusion we will start a new project beginning from the year 1993. Less

Report

(3 results)
  • 1992 Annual Research Report   Final Research Report Summary
  • 1991 Annual Research Report
  • Research Products

    (35 results)

All Other

All Publications (35 results)

  • [Publications] E.OSAWA: "Critical Evaluation of an Empirically Modijied Karplus Equation" Magn.Reson.Lhem.30. 1104-1110 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.GOTO: "An Efficient Algorithm for Searching Low-Energy Conformers of Cycl. Acycl.Molecules" J.Chem.Soc.,Perkin Trans.2. インサツチユウ (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.GOTO: "Further Developments in the Algorithm for Generating Cyclic Conformers" Tetrahedron Lett.33. 1343-1346 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.HIRANO: "Re-evaluation of 1,4-Nonbonded Interaction in Molecular Mechanics" J.Phys.Ory Chem.5. 567-574 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] E.OSAWA: "On the Possibility of Determining Stereochem. in Acyclic Polyhydroxylated Compds." Tetrahedron. 47. 4579-4590 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] S.TSUZUKI: "Inverstigation of Intramolecular Interactions in n-Alkanes" J.Am.Chem.Soc.113. 4665-4671 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] E.OSAWA(編集): "Carbocyclic Cage Compounds" VCH Publ.Inc.(ニューヨーク), 409 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] 大澤 映二: "定量的コンホメーション解析入門" 広川書店, 100 (1991)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] E.Osawa, T.Ouchi, H.Saito, M.Yamato, O.-S.Lee and M.-K.Seo: "Critical Evaluation of an Empirically Modified Karplus Equation" Magn.Reson.Chem.30. 1104-1110 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Goto and E.Osawa: "An Efficient Algorithm for Searching Low-Energy Conformers of Cyclic and Acyclic Molecules" J.Chem.Soc., Perkin Trans.2. 187-195 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Goto and E.Osawa: "Further Developments in the Algorithm for Generating Cyclic Conformers. Test with Cycloheptadecane" Tetrahedron Lett.33. 1343-1346 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Hirano, T.Miyajima, K.Imai, T.Fujiyoshi-Yoneda, and E.Osawa: "Re-evaluation of 1,4-Nonbonded Interaction in Molecular Mechanics" J.Phys.Org.Chem.5. 567-574 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Goto and E.Osawa: "How Many Conformers Are There for Small n-Alkanes? Consequences of Asymmetric Deformations in GG' Segment" Tetrahedron. 49. 387-396 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] K.Hirao, .Mohri, O.Yonemitsu, M.Tabata and J.Sohma: "New Route to 2-Substituted Indoles by Pyrolysis of N-Acetylphenylhydroxylamines" Tetrahedron Lett.33. 1459-1462

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] T.Matsushima, N.Nakajima, O.Yonemitsu and T.Hata: "Conformational Analysis of the 16-Membered Epoxyenone and Complete Stereoselection in the Reduction of its C9 Carbonyl Group, the Key Reaction in the Synthesis of Maridonolides" Tetrahedron. 48. 4525-4532 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] S.Youji, M.Hikota, K.Horita and O.Yonemitsu: "Synthesis of Erythronolide A via Direct Macrolactonization of a Conformationally Controlled Seco-acid with the Yamaguchi Reagent in the Presence of Dimethylaminopyridine" Chem.Pharm. Bull.40. 2540-2542 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] K.Horita, T.Inoue, K.Tanaka and O.Yonemitsu: "Total Synthesis of the Polyether Antibiotic Lysocellin. 1. Stereocontrolled Synthesis of the C1-C9 and C16-C23 Fragments" Tetrahedron Lett.33. 5537-5540 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] K.Horita, K.Tanaka, T.Inoue and O.Yonemitsu: "Total Synthesis of the Polyether Antibiotic Lysocellin. 2. Stereocontrolled Synthesis of the C10-C23 Fragment and Its Aldol Condensation with the C1-C9 Fragment to Complete the Total Synthesis of Lysocellin" Tetrahedron Lett.33. 5541-5544 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] K.Hirao, H.Takahashi, Y.Ohuchi and O.Yonemitsu: "Synthesis of 2.9-Dimetheyl-p-[3^2.5^6]octahedrane" J.Chem.Res.(S) 319, (M). 2601-2611 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1992 Final Research Report Summary
  • [Publications] H.Goto: "Further Developmint,in the Algorithm for gene-rating Cyclic Conformers" Tetrahedron Lett.33. 1343-1346 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] H.Goto: "An Efficient Algorithm for Searching Low-Energy Conforers of Cyclic and Acyclic Molecules" J.Chem.Soc.,Perkin Trans.2. (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] E.Osawa: "Critical Evaluation of an Emperecally Modified Karplus Ewuation" Magn.Reson.Chem.30. 1104-1110 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] H.Goto: "How Many Conformers Are There for Smalln-Alkanes?" Tetrahedron. (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] V.Gogonea: "Implementation of Solvent Effect in Molecular Mechanics.Part1." Supramol.Chem.1. (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] A.E.Aliev: "On the Parametrization of the Multiparame-tric Karplus Ewuation" Tetrahedron Lett.34. (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] E.Osawa(編集): "Carbocyclic Cage Compounds" VCH Publ.Inc.(ニューヨーク), 409 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] 大澤 映二: "定応的コンホメーション解析入門" 広川書店, 100 (1991)

    • Related Report
      1992 Annual Research Report
  • [Publications] H.Goto,E.Osawa,M.yamato: "A Systematic Study on the Conformational Space of Small n-alRanes"

    • Related Report
      1991 Annual Research Report
  • [Publications] T.Hirano,T.Miyajima,K.Imai,T.Fujiyoshi-Yoneda,E.Osawa: "Re-evaluation of 1.4-Nonbonded Interaction in Molecular Mechanecs" J.Phys.Org.Chem.

    • Related Report
      1991 Annual Research Report
  • [Publications] H.Goto,E.Osawa: "Further Developments in the Algorithm for Generating Cyclic Conformers" Tetrahedron Lett.(1992)

    • Related Report
      1991 Annual Research Report
  • [Publications] N.Nakajima,T.Matsushita,O.Yonemitsu,H.Goto,E.Osawa: "Stereoselective Total synthesis of 16-Membered Macrolede Aglycons." Chem.Pharm.Bull.39. 2819-2829 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] E.Osawa,K.Imai,T.Fujiyoshi-Yoneda,C.Jaime,P.ma,S.Masamune: "On the Possibility of Determining Stereochemistry in Acyclic Polyhydroxylated Compounds." Tetrahedron. 47. 4579-4590 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] S.Tsuzuki,L.Schafer,H.Goto,E.D.Jemmis,H.Hosoya,K.Tanabe,E.Osawa: "Investigation of Intramolecular Interactions in n-Alkanes" J.Am.Chem.Soc.113. 4665-4671 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] E.Osawa,H.Goto(分担): "Computer Aided Innovation of New Materials" Elsevier Sci.Publ.(アムステルダム), 984 (1991)

    • Related Report
      1991 Annual Research Report
  • [Publications] E.Osawa (分担): "The Chemistry of Alkanes and Cycloalkanes" John Wiley x Sons,(ニュ-ヨ-ク), (1992)

    • Related Report
      1991 Annual Research Report

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Published: 1991-04-01   Modified: 2016-04-21  

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