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Development of an automated somatic embryo production system equipped with image analysis facilities

Research Project

Project/Area Number 03556036
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 農業気象・生物環境制御学
Research InstitutionThe University of Tokyo

Principal Investigator

KURATA Kenji  Univ.of Tokyo, Fac.of Agric., Ass.Prof., 農学部, 助教授 (90161736)

Co-Investigator(Kenkyū-buntansha) SHONO Hiroshi  Univ.of Iwate, Dept.of Agronomy and Forestry, Instructor, 農学部, 助手 (90235721)
KOZAI Toyoki  Chiba Univ., Dept.of Hort., Prof., 園芸学部, 教授 (90081570)
IBATAKI Yasuomi  Univ.of Tokyo, Fac.of Agric., Instructor, 農学部, 助手 (50242160)
GOTO Eiji  Univ.of Tokyo, Fac.of Agric., Instructor, 農学部, 助手 (00186884)
Project Period (FY) 1991 – 1993
Project Status Completed (Fiscal Year 1993)
Budget Amount *help
¥16,600,000 (Direct Cost: ¥16,600,000)
Fiscal Year 1993: ¥4,200,000 (Direct Cost: ¥4,200,000)
Fiscal Year 1992: ¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 1991: ¥8,600,000 (Direct Cost: ¥8,600,000)
KeywordsArtificial Seed / Automation / Embryogenesis / Image Analysis / Somatic Embryo / 電気泳動 / 誘電泳動 / フ-リエ記述子 / ハフ変換 / 骨格化 / ファジィクラスタリング
Research Abstract

The objective of the study was to develop an automated somatic embryo production system, in which good quality torpedo stage embryos were selected for further treatment of transplant or artificial seed production. The selection was executed based on image analysis of each somatic embryo. The study consisted of three parts.
1. Development of an automated embryogenic callus selection system. In a conventional manual method of somatic embryo production, embryogenic callus was selected by sieving with three different size mesh. This procedure was automated and tested using carrot callus. The results showed increased ratio of malformed embryos by mechanical sieving, but that the automation was possible.
2. Development of image analysis method of somatic embryos. Image analysis algorithms for selecting quality torpedo stage embryos were developed and tested. Algorithms based on thinning, generalized Hough transform, and Fourier descriptor were compared using carrot somatic embryo images. The results showed that the thinning algorithm was most promising which gave results 90% in agreement with human judgments.
3. Development of SOMES (SOMatic Embryo Sorter). A system for selecting embryos was constructed and tested. The thinning algorithm was implemented. Path of liquid medium containing embryos was changed according to the results of image analysis of each embryo. The results showed the effectiveness of SOMES, but at the same time difficulties in image analysis of moving embryos in the imaging cell. The reasons of misjudgments were analyzed and points to be improved were suggested : use of a thinner tube for the imaging cell, and acquiring images from two angles. Efforts are being made to improve SOMES in this direction.

Report

(4 results)
  • 1993 Annual Research Report   Final Research Report Summary
  • 1992 Annual Research Report
  • 1991 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] K.Kurata H.Shono: "An application of Fourier descriptor for selecting somatic embryos" Acta.Horticulturae. 319. 591-594 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] H.Liyanage K.Kurata: "Relation between the shape of carrot somatic embryos and their quality plant regeneration" Acta Horticulturae. 319. 267-272 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata Y.Futaya: "Automation of selecting embryogenic callus by sieving" Acta Horticulturae. 319. 563-566 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata et al.: "A thinning-based algorithm for evaluating somatic embryos" Transactions of the ASAE. 36. 1485-1489 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] 庄野浩資 蔵田憲次: "一般ハフ変換を応用した不定胚の形状選別" 生物環境調節. 31. 109-113 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata Y.Ibaraki: "Automatic selection and dielectrophoretic handling of somatic embryos" Plant Cell,Tissue and Organ Culture. (submitted).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata: "J.Aitken-Christie et al.(ed.)Automation θ Environmental Control in Plant Tissue Culture" Kluwer Academic Publishers(in press),

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata, H.Shono: "An application of Fourier descriptor for selecting somatic embryos." Acta Horticulturae. 319. 591-594 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata, Y.Futaya: "Automation of selecting embryogenic callus by sieving." Acta Hort.319. 563-566 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] H.Liyanage, K.Kurata: "Relation between the shape of carrot somatic embryos and their quality plant regeneration." Acta Hort.319. 267-272 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata, M.Komine, H.Liyanage, Y.Ibaraki: "A thinning-based algorithm for evaluating somatic embryos." Transactions of the ASAE. 36. 1485-1489 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] H.Shono, K.Kurata: "An application of generalized Hough transform in selecting somatic embryos." Environmental Control in Biology (in Japanese). 31. 109-113 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata, Y.Ibaraki: "Automatic selection and dielectrophoretic handling of somatic embryos." Plant Cell, Tissue and Organ Culture. (submitted).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] K.Kurata: "Image analysis for embryogenesis." J.Aitken-Christie e al.(ed.) Automation & Environment Control in Plant Tissue Culture, Kluwer Academic Publishers. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] 庄野浩資: "一般ハフ変換を応用した不定胚の形状選別" 生物環境調節. 31. 109-113 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Kurata,K.: "A-thinnig-based algorithm for evaluating somatic embryos" Transactions of the ASAE. 36. 1485-1489 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Ibaraki,Y.: "SOMES2:Image-analysis based somatic embryo sorter" Transactions of the ASAE. (予定).

    • Related Report
      1993 Annual Research Report
  • [Publications] K.Kurata,H.Shono: "An application of Fourier descriptor for selecting somatic embryos" Acta Horticalturae. 319. 591-594 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] H.Liyanage,K.Kurata: "Relation between the shape of carrot somatic embryos and their quality plant regeneration" Acta Horticulturae. 319. 267-272 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] K.Kurata,Y.Futaya: "Automation of selecting embryogenic callus by sieving" Acta Horticulturae. 319. 563-566 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] K.Kurata,Y.Ibaraki: "Automatic selection of quality somatic embryos based on image processing" Transactions of ASAE.

    • Related Report
      1992 Annual Research Report
  • [Publications] Kurata,K.: "Comparison of Several Algorithms for Evaluating Carrot Somatic Embryos (tentative)" Acta Horticulturae.

    • Related Report
      1991 Annual Research Report

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Published: 1991-04-01   Modified: 2016-04-21  

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