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Post-Transcriptional Control of Gene Expression : mRNA Degradation and Translational Regulation

Research Project

Project/Area Number 04044052
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionJoint Research
Research InstitutionInstitute of Medical Science, University of Tokyo

Principal Investigator

NAKAMURA Yoshikazu  Institute of Medical Science, University of Tokyo, Associate Professor, 医科学研究所, 助教授 (40114590)

Co-Investigator(Kenkyū-buntansha) AIBA Hiroji  Professor, Faculty of Science, Nagoya University, 理学部, 教授 (20025662)
HERSHEY John wb  Professor, Department of Biological Chemistry, University of California - Cavis,, デービス校・生物化学科, 教授
BOCK August  Professor, Lehrstuhl fur Mikrobiologie der Universitat, Germany, 生物遺伝学研究所, 教授
COURT Donald l.  Head, National Cancer Institute FCRF, USA, チーフ
ISAKSSON Leif  Professor, Department of Microbiology, Stockholm University, Sweden, 微生物学科, 教授
SPRINGER Mathias  Director, Institut de Biologie Physico-Chimique, France, 部長
Project Period (FY) 1992 – 1993
Project Status Completed (Fiscal Year 1993)
Budget Amount *help
¥30,000,000 (Direct Cost: ¥30,000,000)
Fiscal Year 1993: ¥15,000,000 (Direct Cost: ¥15,000,000)
Fiscal Year 1992: ¥15,000,000 (Direct Cost: ¥15,000,000)
KeywordsGene Expression / Posttranscriptional Control / Translational Control / Peptide Chain Release Factor / Ribonuclease III / Suppressor / Translational Activation / Alternate Readings of the Genetic Code
Research Abstract

1. Identification of the prfC gene encoding peptide-chain-release factor 3 of Escherichia coli : The termination of protein synthesis in bacteria requires two codon-specific polypeptide release factors, RF-1 and RF-2. A third factor, RF-3, that stimulates the RF-1 and RF-2 activities, was originally identified in E.coli, but it has received little attention since the 1970's. To search for the gene encoding RF-3, we selected novel nonsense-suppressor mutations by random insertion mutagenesis. One of these mutations, named tos-1, mapped to the 99.2 min region on the E. coli chromosome and suppressed all three stop codons. Complementation studies and analyses of the DNA and protein sequences revealed that the tos gene encodes a 59,442 Da protein. Extracts containing the overproduced Tos protein markedly increased the formation of ribosomal termination complexes and stimulated the RF-1 or RF-2 activity in the codon-dependent in vitro termination assay. These results fit perfectly with thos … More e described in the original publications on RF-3 and the tos gene has therefore been designated prfC.
2. Control and function of lysyl-tRNA synthetases in E. coli : diversity and co-ordination : Lysyl-tRNA synthetases are synthesized from two distinct genes in E.coli, lysS (constitutively) and lysU (inducibly), however, the physiological significance and the differential control mechanism of these two genes have been a long-standing puzzle. We have successfully uncovered a significant control mechanism of lysU expression, that involves the leucine-responsive regulatory protein (Lrp) and a translational enhancer element called "downstream box".
3. Regulation of Ty1 transposition and mitochondrial heat shock protein expression by the minor arginine (AGG) tRNA in Saccharomyces cerevisiae : The S. cerevisiae retrotransposon Ty1 genome contains two genes, TYA1 (gag) and TYB1 (pol) genes, and the TYA1-TYB1 fusion protein is synthesized by +1 ribosomal frameshifting in the TYA1 sequence CUU AGG C. Ribosomal pausing at a rare AGG-arginine codon and slippage of a leucyl-tRNA from CUU to UUA are required for frameshifting. Disruption of the tRNA(CCU) gene, designated HSX1, caused increased translational frameshifting and decreased retrotransposition. Disruption of the HSX1 gene also caused a defect in heat-shock induction of the SSC1 gene which encodes a mitochondrial chaperon, hsp70, of S. cerevisiae. Since the hsx1 mutation did not affect expression of other hsp genes, SSC1 expression is likely controlled by a novel mechanism involving the minor tRNA (CCU). Less

Report

(2 results)
  • 1993 Final Research Report Summary
  • 1992 Annual Research Report
  • Research Products

    (17 results)

All Other

All Publications (17 results)

  • [Publications] Ito,K.: "Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element" Proc.Natl.Scad.Sci.USA. 90. 302-306 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Ito,K.: "Pleiotropic effects of the rpoC10 mutation affecting the RNA polymerase β^1 subunit of E. coli on factor-dependent transcription termination" Mol.Microbiol.9. 285-293 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Wada,M.: "cDNA sequence diversity and genomic clusters of major surface glycoprotein genes of pneumocystis carinii" J.Infect.Dis.168. 979-985 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Kawakami,K.: "A rare tRNA-Arg(CUU)that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae" Genetics. 135. 309-320 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Nakamura,Y.: "Control and function of lysyl-tRNA synthetases:diversity and coordination" Mol.Microbiol.10. 225-231 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Mikuni,O.: "Identification of the prfC gene encoding peptide-chain-release factor 3 of Escherichia coli" Proc.Natl.Acad.Sci.USA. 91(in press). (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Ito,K. et al.: "Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element" Proc. Natl. Acad. Sci. USA. 90. 302-306 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Ito,K. et al.: "Pleiotropic effects of the rpoC10 mutation affecting the RNA polymerase B' subunit of Escherichia coli on factor-dependent transcription termination and antitermination" Mol.Microbiol.9. 285-293 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Wada,M. et al.: "cDNA sequence diversity and genomic clusters of major surface glycoprotein genes of Pneumocystis carinii" J.Infect. Dis.168. 979-985 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Kawakami,K. et al.: "A rare tRNA-Arg (CUU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae" Genetics. 135. 309-320 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Nakamura,Y et al.: "Control and function of lysyl-tRNA synthetases : diversity and co-ordination" Mol.Microbiol.10. 225-231 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] Mikuni,O.: "Identification of the prfC gene encoding peptide-chain-release factor 3 of Escherichia coli" Proc. Natl. Acad. Sci. USA. 91. in press (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1993 Final Research Report Summary
  • [Publications] KAWAKAMI,K.: "Ty element-induced temperature sensitive mutations of Saccaromyces cerevisiae." Genetics. 131. 821-832 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Charlier,D.: "Arginine regulon of Escherichia coli K-12. A study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression." J.Mol.Biol.226. 367-386 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] NAKAMURA,Y.: "Overproduction and purification of lysyl-tRNA synthetase encoded by the herC gene of E. coli." Biochimie. 74. 581-584 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] KAWAKAMI,K.: "Differential regulation of two genes encoding lysyl-tRNA synthetases in E.coli: lysU-constitutive mutations compensate for a lysS null mutation." Mol.Microbiol.6. 1739-1746 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] ITO,K.: "Multiple control of Escherichia coli lysyl-tRNA synthetase expression involves a transcriptional repressor and a translational enhancer element." Proc.Natl.Acad.Sci.USA. 90. 302-306 (1993)

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2016-04-21  

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