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Search for New Function of RNAs

Research Project

Project/Area Number 04272104
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Research InstitutionHirosaki University

Principal Investigator

MUTO Akira  Hirosaki University, Faculty of Science, Professor, 理学部, 教授 (80034635)

Co-Investigator(Kenkyū-buntansha) KOBAYASHI Satoru  University of Tsukuba, Institute of Biological Science, Lecuturer, 生物科学系, 講師 (90225508)
HIMENO Hyouta  Hirosaki University, Faculty of Science, Associate Professor, 理学部, 助教授 (80208785)
ENDO Yaeta  Ehime University, Faculty of Engineering, Professor, 工学部, 教授 (40093843)
HARADA Fuio  Kanazawa University, Cancer Research Institute, Professor, がん研究所, 教授 (40124424)
INOKUCHI Hchiro  Kyoto University, Graduate School of Science, Associate Professor, 大学院・理学研究科, 助教授 (20028195)
Project Period (FY) 1992 – 1995
Project Status Completed (Fiscal Year 1996)
Budget Amount *help
¥106,200,000 (Direct Cost: ¥106,200,000)
Fiscal Year 1995: ¥27,400,000 (Direct Cost: ¥27,400,000)
Fiscal Year 1994: ¥28,300,000 (Direct Cost: ¥28,300,000)
Fiscal Year 1993: ¥28,000,000 (Direct Cost: ¥28,000,000)
Fiscal Year 1992: ¥22,500,000 (Direct Cost: ¥22,500,000)
KeywordstRNA / rRNA / small RNA / 10Sa RNA / trans-translation / aminoacyl-tRNA synthetase / ribosome / mitochondria / RNA機能構造 / 低分子RNA / 10SaRNA / マイコプラズマ / リボトキシン / RNA構造 / RNA機能 / tRNAアイデンテイテイ / rRNA機能構造 / 生殖細胞分化 / タンパク合成 / ショウジョウバエ
Research Abstract

The goal of this groups is (1) to know the variation of RNA functions by finding new RNA molecules and elucidating their functions and (2) to find out the new functions of tRNA and rRNA by analysis of their functional structures. As shown below, we have almost reached to our goal.
(1) Search for new small RNA molecules : A number of new small RNA molecules have been found from bacteria, such as Mycoplasma, Escherichia coli and Bacillus Subtilis, and animal cells and their structures have also been determined. Furthermore, for functionally interesting molecules, their functional structures have been analyzed. Especially, 10Sa RNA has been found to exist at least in all eubacteria, working as an mRNA to add a tag gragment to the uncompleted polypeptide by the mechanism of trans-translation. Moreover, the analysis fo a ts-mutant that shows different growth with and without 10Sa RNA suggested that this RNA has other various functions in the cell. Many other small RNAs including MCS4 RNA,4.5S RNAH has been found and their functions are being analyzed.
(2) New functions of tRNA and rRNA : the recognized structures of all the tRNA in the Escherichia coli by aminoacyl-tRNA synthetase have been determined by the mutant analysis and the same analysis has been applied to the yeast system. The results obtained by these analysis gave important suggestions for evolution of tRNA and recognition of tRNA,origin of the discrimination. In parallel, the analysis of the thiostrepton domain (GTPase center) and the Toxin domain of Escherichia coli 23S rRNA showed that during the GTP hydrolysis reaction on ribosome these domains change their conformations, interacting with each other by the cross talk. Furthermore, the mitocondrial large rRNA has been found to function in pole cell formation.

Report

(5 results)
  • 1996 Final Research Report Summary
  • 1995 Annual Research Report
  • 1994 Annual Research Report
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Ushida,C.: "RNase of Mycoplasma capricolum" Mol.Biol.Report. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] Muto,A: "Structure and function of 10Sa RNA:trans-translation system" Biochimie. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] C.Ushida, D.Izawa and A.Muto: "RNase of Mycoplasma capricolum." Mol.Biol.Report. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] A.Muto, M.Sato, T.Tadaki, M.Fukushima, C.Ushida and H.Himeno: "Structure and function of 10Sa RNA : trans-translation system" Biochimie. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1996 Final Research Report Summary
  • [Publications] C.Ushida: "Novel small RNAs of Mycoplasma capricolum" DNA Research. 2. 229-230 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] C.Ushida: "tRNA-like structure in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis" Nucleic Acids Res.22. 3392-3396 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Y.Komine: "A tRNA-like structure is present in 10Sa RNA,a small stable RNA from Escherichia coli" Proc.Natl.Acad.Sci.USA. 91. 9223-9227 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] N.Nameki: "Identity elements of Saccharomyces serevisiae tRNA^<His>" Nucleic Acids Res.23. 389-394 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] A.Gluck: "The ribosomal RNA identity elemnt for ricin and for alpha sarcin : mutations in the putative CG pair that closes a GAGA tetraloop" Nucleic Acids Res.22. 321-324 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] S.Kobayashi: "Mislocalization of oskar product in the anterior pole results in ectoic localization of mitochondrial large rRNA in Drosophila melanogaster" Develop.Biol.169. 384-386 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] C.Ushida: "tRNA-like structure in 10SaRNAs of Mycoplasma capricolum and Bacillus subtilis" Nucleic Acids Res.22. 3392-3396 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] C.Ushida: "A small RNA of Mycoplasma capricolum that resembles eukaryotic U6 small nuclear RNA" Nucleic Acids Res.21. 2649-2653 (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] Y.Komine: "A tRNA-like structure is present in 10Sa RNA,a small stable RNA from Escherichia coli" Proc.Natl.Acad.Sci.USA. 91. 9223-9227 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] H.Asahara: "Escherichia coli seryl-tRNA synthetase recognizes tRNA^<Ser> by its characteristic tertiary structure" J.Molec.Biol.236. 738-748 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] A.Gluck: "The ribosomal RNA identity elemnt for ricin and for alpha sarcin:mutations in the putative CG pair that closes a GAGA tetraloop" Nucleic Acids Res.22. 321-324 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] S.Kobayashi: "Presence of mitochondrial large ribosomal RNA outside mitochondria in germ plasm of Drosophila melanogaster" Science. 260. 1521-1524 (1993)

    • Related Report
      1994 Annual Research Report
  • [Publications] C.Ushida: "A small RNA of Mycoplasma capricolum that resembles eukaryotic U6 small nuclear RNA" Nucleic Acids Research. 21. 6325-6330 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.J.Rogers: "Switching tRNA^<Gln> identity from glutamine to tryptophan." Proc.Natl.Acad.Sci.USA. 89. 3463-3467 (1992)

    • Related Report
      1993 Annual Research Report
  • [Publications] H.Asahara: "Recognition nucleotides of Eschericlia coli tRNA^<Leu> and its elements facilitating discrimination from tRNA^<Ser> and tRNA^<Tyv>" J.Mol.Biol.231. 219-229 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] I.G.Wool: "Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation." Trends in Biochemical Science. 17. 266-269 (1992)

    • Related Report
      1993 Annual Research Report
  • [Publications] S.Kobayashi: "Twotypes of pole cells are present in the Drosophila embryo,one with and one with out splicing activity for the third P-element intron" Development. 117. 885-893 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] S.Kobayashi: "Presence of mitochondriae large ribosomal RNA outside mitochondria in germ plasm of Drosophila melanogaster" Science. 260. 1521-1524 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] C.Ushida: "A small RNA of Mycoplasma capricolum that resembles eukaryotic U6 snRNA" Nucleic Acids Research. 21. (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] R.Tanaka: "Euolution of tRNAs and rRNA genes in Acholeplasma laidlawii" Nucleic Acids Research. 19. 6787-6792 (1991)

    • Related Report
      1992 Annual Research Report
  • [Publications] Y.Komine: "Physical map locations of the genes that encode small stable RNAs in Escherichia coli" J.Bacteriol.173. 1813-1816 (1991)

    • Related Report
      1992 Annual Research Report
  • [Publications] A.Gluck: "Ribotoxin recognition of ribosmal RNA and a prospsal for the mechanism of translation" Trends in Biological science. 17. 266-269 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Y.Endo: "Ribosomal RNA identity elements for ricin A chain recognition and catalysis." J.Molec.Biol.221. 193-207 (1991)

    • Related Report
      1992 Annual Research Report
  • [Publications] S.Kobayashi: "Double staining technique with X-gal and anti body in Drosophila melanogaster" Biotechnic.Histochem.(1993)

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2016-04-21  

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