• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

The dynamic aspect of genome structures in plants

Research Project

Project/Area Number 04304012
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field Breeding science
Research InstitutionThe University of Tokyo

Principal Investigator

HIRAI Atsushi  Univ.of Tokyo, Agriculture Professor, 農学部, 教授 (60023470)

Co-Investigator(Kenkyū-buntansha) WATANABE Akira  Univ.of Tokyo, Science Professor, 大学院・理学系, 教授 (70023471)
MIKAMI Tetsuo  Hokkaido Univ.Agriculture Professor, 農学部, 教授 (50133715)
KAMEYA Toshiaki  Tohoku Univ.GEI Professor, 遺伝子生態研究センター, 教授 (70006013)
TSUNEWAKI Koichiro  Fukui P.Univ.Bioresource Professor, 生物資源学部, 教授 (20026438)
SUGIURA Masahiro  Nagoya Univ.Gene Research Professor, 遺伝子実験施設, 教授 (80027044)
Project Period (FY) 1992 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥16,000,000 (Direct Cost: ¥16,000,000)
Fiscal Year 1994: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1993: ¥6,000,000 (Direct Cost: ¥6,000,000)
Fiscal Year 1992: ¥7,000,000 (Direct Cost: ¥7,000,000)
KeywordsPlant genomes / Nucleus / Chloroplast / Mitochondrion / 核ゲノム / 葉緑体ゲノム / ミトコンドリアゲノム / 構造変異 / RFLP分析 / 移行シグナル / 種間変異 / 遺伝子地図
Research Abstract

Dynamic aspects of plant genomes were analyzed in the molecular level. The structure and organization of chloroplast DNA from Oryza species have been studied, and deletions which were the result of intramolecular recombination mediated by short direct-repeat sequences were found. This type of variation existed within a single species. It has been known that the mitochondrial genome of higher plant is largest and most complex among those of eukaryotes. The complexity of the genome is enhanced by the existence of chloroplast sequences in the genome. The entire set of transferred chloroplast DNA sequences in the mitochondrial genome from rice was identified and sequenced. Sixteen chloroplast sequences, ranging from 32 bases to 6.8 kb in length, were found to be dispersed throughout the rice mitochondrial genome. The transfers of segments of chloroplast DNA seem to have occurred at different times, both before the divergence of rice and maize and after this divergence. Small repeated sequences (from 60 to 66 basepairs in length)have been identified in the mitochondrial genome of rice. There are atleast ten copies of these sequences and thety are distributed throughout the mitochondrial genome. Each is potentially capable of forming a stem-and-loop structure and have been designated PRS(Palindromic Repeated Sequences). It was found that homologous recombinatio mediated by two PRSs occurred in the mtDNA of Oryza after divergence of the BB genome-type and the other genome-types of Oryza.
The origins and the phylogenetic relationships between diploid and polyploid wheats have studied using molecular genetic methods. The results show the evolution of the genome mainly depends on changes in the untranslated regions of the DNA,and the evolutional rates of coding sequences are low.

Report

(4 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (30 results)

All Other

All Publications (30 results)

  • [Publications] Nakazono,M.et el.: "Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice." Mol.Gen.Genet.236. 341-346 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Watanabe,N.et al.: "Evolutionary variation in DNA sequences transferred from chloroplast genomes to mitochondrial genomes in the Graminae." Curr.Genet.26. 512-518 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kanazawa,A.,et al.: "Reversible changes in the composition of the population of mtDNAs during dedifferentiation and regeneration in tobacco." Genetics. 138. 865-870 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Wakasugi,T.et al.: "Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine,Pinus thunbergii." Proc.Natl.Acad.Sci.USA. 91. 9794-9798 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Yokoyama,R.et al.: "The rolC promoter of Agrobacterium rhizogenes Ri plasmid is activated by sucrose in transgenic tobacco plants." Mol.Gen.Genet.244. 15-12 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Fukuoka,H.et al.: "Molecular changes of organelle DNA sequences in rice through dedifferentiation,long-term culture or the morphogenesis process." Plant Mol.Biol.26. 899-907 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Nakazono, M.et al. :"Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice." Mol.Gen.Genet.236. 341-346 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Watanabe, N.et al. :"Evolutionary variation in DNA sequences transferred from chloroplast genomes to mitochondrial genomes in the Graminae." Cuur.Genet.26. 512-518 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kanazawa, A., et al. :"Reversible changes in the composition of the population of mtDNAs during dedifferentiation and regeneration in tobacco." Genetics. 138. 865-870 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Wakasugi, T.et al. :"Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine, Pinus thunbergii." Proc.Natl.Acad.Sci.USA. 91. 9794-9798 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Yokoyama, R.et al. :"The rolC promoter of Agrobacterium rhizogenes Ri plasmid is activated by sucrose in transgenic tobacco plants." Mol.Gen.Genet.244. 15-22 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Fukuoka, H.et al. :"Molecular changes of organelle DNA sequences in rice through dedifferentiation, long-term culture or the morphogenesis process." Plant Mol.Biol.26. 899-907 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Watanabe,N.et al.: "Evolutionary variation in DNA sequences transferred from chloroplast genomes to mitochondrial genomes in the Graminae." Curr.Genet.26. 512-518 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Nakazono,M.et al.: "The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters." Curr.Genet.27. 184-189 (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Mori,N.et al.: "Wheat phylogeny determined by RFLP analysis of nuclear DNA.2.Wild tetraploid wheats." Theor.Appl.Genet.(in press).

    • Related Report
      1994 Annual Research Report
  • [Publications] Wakasugi,T.et al.: "Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine,Pinus thunbergii." Proc.Natl.Acad.Sci.USA. 91. 9794-9798 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Fushimi,T.et al.: "Nucleotide sequence of a rice cDNA similar to a maize NADP-dependent malic enzyme." Plant Mol.Biol.24. 965-967 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Senda,M.,et al.: "Mitochondrial gene variation and phylogenetic relationships in the genus Beta." Theor.Appl.Genet.(in press).

    • Related Report
      1994 Annual Research Report
  • [Publications] Nakazono,M.: "Identification of the entire set of transferred chlorplast DNA sequences in the mitochondrial genome of rice." Mol.Gen.Genet.236. 341-346 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Murayama,Y.: "Purification of chloroplast elongation factor Tu and cDNA analysis in tobacco:the existence of two chloropast elongation factor Tu species." Plant Mol.Biol.22. 767-774 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Kidou,S.: "Molecular structure of ras-related small GTP-binding protein genes of rice plants and GTPase activities of gene products in Escherichia coli." FEBS Letter. 332. 282-286 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Kang,K.: "Selection and characterization of a 5-methyltryptophan resistant mutant in Zea mays." Euphytica. 69. 95-101 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Kubo,T.: "The sugar beet mitochondrial genome contains ORF sharing sequence homology with the gene for the 30kDa subunit of bovine mitochondrial complex I." Mol.Gen.Genet.241. 479-482 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Tsunewaki,K.: "Use of RFLP analyses for wheat germplasm evaluation." Biodiversity and Wheat Improvement. 17-30 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Kanno,A.: "Comtarative studies on the structure of chloroplast DNA from four species of Oryza:Cloning and physical map." Theor.Appl.Genet.83. 791-798 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Senda,M.: "The sugar beet mitochondrial gene for ATPase a-subunit:sequence,transcription and rearrangements in cytoplasmic male sterile plants." Curr.Genet.

    • Related Report
      1992 Annual Research Report
  • [Publications] Konishi,T.: "Protein transport into thylakoid lumen-A stromal processing and the energy requirement for the import of the precursor for the 23-KD protein of PS II." Plant Cell Physiol.in press.

    • Related Report
      1992 Annual Research Report
  • [Publications] Ye,L.: "Domeins required for nucleic acid binding activities in chloroplast ribonucleoproteins." Nucleic Acids Res.20. 6275-6279 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Liu,Y.: "Moderaately repeated,dispersed,and highly variable(MRDHV)genomic sequences of common wheat usable for cultivar identification." Theor.Appl.Gent.84. 535-543 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Kanno,A.: "Variations in chloroplast DNA from rice(Oryza sativa)differences between deletions mediated by short direct-repeat sequences within a single species." Theor.Appl.Genet.

    • Related Report
      1992 Annual Research Report

URL: 

Published: 1992-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi