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Supporting research on making linkage maps of marker, RFLP and RAPD loci in genome of sugi, Cryptomeria japonica D.Don

Research Project

Project/Area Number 04304017
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field 林学
Research InstitutionUniversity of Tsukuba

Principal Investigator

OHBA Kihachiro  Univ.of Tsukuba, Inst.Agri.& For., Prof., 農林学系, 教授 (80176982)

Co-Investigator(Kenkyū-buntansha) MUKAI Yuzuru  For.& Forest Pro.Res.Inst.Senior Sci., 生物機能開発部, 主任研究官
MASAHIRO Hizume  Ehime Univ., Fac.Education, Prof., 教育学部, 教授 (30116967)
TODA Yoshihiro  Kyushutokai Univ., Fac.Agri., Prof, 農学部, 教授 (50070082)
ARAKI Masayuki  Univ.of Tsukuba, Inst.Agri. & For., Assoc.Prof., 農林学系, 助教授 (80193077)
SHIRAISHI Susumu  Univ.of Kyushu, Fac.Agri., Assoc.Prof., 農学部, 助教授 (70226314)
内田 煌二  筑波大学, 農林学系, 講師 (10015670)
斎藤 明  九州大学, 農学部, 教授 (30253511)
Project Period (FY) 1992 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥18,000,000 (Direct Cost: ¥18,000,000)
Fiscal Year 1994: ¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 1993: ¥6,000,000 (Direct Cost: ¥6,000,000)
Fiscal Year 1992: ¥9,000,000 (Direct Cost: ¥9,000,000)
KeywordsCryptomeria japonica / Linkage map / RFLP / RAPD / Lethal gene / Chromosome / Chromosome staining / Restriction endonuclease / 連鎖分析
Research Abstract

Sugi, Cryptomeria japonica D.Don has been a important forestry species in Japan sice old times. It has haploid chromosome number of 11 with similar phenotypic features except to two chromosomes which have a satelite or secondary constriction.
In this project, firstly, studies were made on the methods for estimatin of recombination values between marker loci including isozyme, RFLP and RAPD loci with or without the presence of a lethal factor. Existence of a lethal locus was examined by the magnitude of deviation of the observed segregation ratio from expected one for each locus separately. The fitness of the model involving a lethal factor were evaluated by LOD scores. This method was applied for isozyme segregation and it was found a lethal gene linked to Lap, G6p, Dia-3 respectively.
In a three generation progeny derived from a cross of Kumotooshi and Okinoyama sugi, 164 loci including 128 RFLP,33 RAPD,2 isozyme and 1 dwarf were put in a linkage map with 13 linkage groups with total map distance of 1,190 cM.Out of 13 linkage groups, there were 8 linkage groups which had clustered loci with deviated segregation ratios. One or two lethal genes were detected in 6 linkage groups, and it was found that with the lethal genes, map distances were elongated than those estimated by free of lethal gene. Another map in which 175 RAPD loci were placed, was made by analysis of haploid megagametophytes. It had 14 linkage groups with 2,212.3 cM in total.
Discrimination of haploid chromosome was tried by clod treatment and fluorescence in situ hybridization. It was tried to improve the methods and chromosome fragments were recovered after cutting with laser beam.

Report

(4 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (26 results)

All Other

All Publications (26 results)

  • [Publications] 大庭喜八郎・河崎久男、外11名: "劣性標識遺伝子ホモ個体の利用と胚致死遺伝子による分離比の偏りの補正21GC01:筑波大学農林技術センター演習林報告" 8. 139-273 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 大庭喜八郎・河崎久男、外9名: "共優性遺伝子座間の連鎖分析における胚致死遺伝子座による分離比の偏りの補正" 筑波大学農林技術センター演習林報告. 9. 35-139 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 大庭喜八郎・河崎久男、外9名: "致死遺伝子座と標識遺伝子座、RFLP座およびRAPD座との組換価の推定" 筑波大学農林技術センター演習林報告. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Mukai,Y.,et al.(7 others): "A partrial linkage map for sugi(Cryptomeria japonica)based on RFLP,RAPD and isozyme loci." DNA LINK 3(1993). 14-22 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Mukai,Y.,et al.(8 others): "A linkage map for sugi(Cryptomeria japonica)based on RFLP,RAPD and isozyme loci." Theoretical and Applied Genetics. (in press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Tsumura,Y.,et al.(3 others): "Physical map of chloroplast DNA in sugi,Cryptomeria japonica." Theoretical and Applied Genetics. 166-172 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hizume,M.,F.Ishida and M.Murata: "Multiple location of the rDNA genes in chromosomes of pines,Pinus densiflora." Jpanese Journal of Gentics. 67. 389-396 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Tsumura,Y.,et al.(3 others): "Physical map of chloroplast DNA in sugi,Cryptomeria japonica." Theoretical and Applied Gentics. 86. 166-172 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hizume,M.: "Chromosomal location of 5S rDNA genes in Vicia faba and Crepis capillaris." Cytologia. 58. 417-421 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 中村美樹、外7名: "スギ科樹木の染色体の微細加工と加工断片の回収." 日本林学会九州支部大会研究論文集. 47. 93-94 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 白石 進・松田 学: "RAPDマーカーを用いたスギのジーンマッピングに向けての基礎研究.21GC11:日本林学会九州支部大会研究論文集" 47. 104-108 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Ohba, K., H.Kawasaki, N.Kuramoto, N.Tomaru, Y.Tsumura, K.Uchida, T.Nakamura, H Okuizumi, Y.Suyama, M.Na'iem, M.Takahashi and C.Takahashi: "Studies on a bridge system with isozyme locus for linkage analysis of marker genes and of restriction fragment length polymorphism (RFLP) in sugi, Cryptomeria japonica D.Don. 1. Use of recessive marker homozygotes and adjustment of deviated segregation ratio caused by embryonic lethal genes. (in Jpn.)" Bull.Tsukuba Univ.Forest. 8. 139-273 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Ohba, K., H.Kawasaki, N.Kuramoto, N.Tomaru, Y.Tsumura, K.Uchida, T.Nakamura, H Okuizumi, Y.Suyama, C.Takahashi: "Studies on a bridge sysmtem with isozyme locus for linkage analysis of marker genes and of restriction fragment length polymorphism (RFLP) in sugi, Cryptomeria japonica D.Don. 2. Adjustment of distorted segregation ratio caused by embryonic lethal genes in linkage analysis of co-dominant loci. (in Jpn.)" Bull.Tsukuba Univ.Forest. 9. 35-139 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Ohba, K., H.Kawasaki, N.Kuramoto, N.Tomaru, Y.Tsumura, M,Araki, K.Uchida, T.Nakamura, H.Okuizumi, Y.Suyama, C.Tomaru: "Studies on a bridge sysmtem with isozyme locus for linkage analysis of marker genes and of restriction fragment length polymorphism (RFLP) in sugi, Cryptomeria japonica D.Don. 3. Estimation of value of recombination between a lethal gene and marker, RFLP or RAPD loci. (in Jpn.)" Bull.Tsukuba Univ.Forest. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Mukai, Y., Y.Suyama, T.Kawahara, H.Yoshimaru, T.Kondo, N.Tomaru and M.Murai: "A partial linkage map for sugi (Cryptomeria japonica) based on RFLP,RAPD and isozyme loci." DNA LINK3 (1993). 14-22 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Mukai, Y., Y.Suyama, T.Kawahara, H.Yoshimaru, T.Kondo, N.Tomaru, N.Kuramoto, and M.Murai: "A linkage map for sugi (Cryptomeria japonica) based on RFLP,RAPD and isozyme loci." Theoretical and Applied Genetics. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Tsumura, Y., Y.Ogihara, T.Sasakuma and K.Ohba: "Physical map of chloroplast DNA in sugi, Cryptomeria japonica." Theoretical and Applied Genetics. 86. 166-172 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Himume, M., F.Ishida, and M.Murata: "Multiple locations of the rRNA genes in chromosomes of pine, Pinus densiflora and Pinus thunbergii." Jpn.J.Genet.67. 389-396 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hizume, M.: "Chromosomal localization of 5S rDNA genes in Vicia faba and Crepis capillaris." Cytologia. 58. 417-421 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Nakamura, M., K.Nagano, Y.Toda, Y.Kamisugi, F.Sakai, M.Nishiguchi, K.Fukui: "Microdissection and recovery of the dissected fragments of TAXODIACEAE chromosomes." Bulletin of Kyushu Branch of the Japanese Forestry Society. 47. 93-94 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Matsuda, M.and S.Shiraishi: "A basic study on gene mapping of Cryptomeria japonica D.Don.using RAPD methods." Bulletin of Kyushu Branch of the Japanese Forestry Society. 47. 107-108 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 大庭喜八郎・河崎久男、外10名: "致死遺伝子座と標識遺伝子座、アイソザイム遺伝子座、RFLP座およびRAPD座との組換価の推定." 筑波大学農林技術センター演習林報告. (印刷中).

    • Related Report
      1994 Annual Research Report
  • [Publications] Mukai,Y.,et al.(8 others): "A linkage map for sugi(Cryptomeria japonica)based on RFLP,RAPD and isozyme loci." Theoretical and Applied Genetics. (in press).

    • Related Report
      1994 Annual Research Report
  • [Publications] 大庭喜八郎・河崎久男、外8名: "共優性遺伝子座間の連鎖分析における胚致死遺伝子による分離比の偏りの補正" 筑波大学農林技術センター演習林報告. 9. 35-139 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Hizume,M.: "Chromosomal localization of 5S rRNA genes in Vicia faba and Crepis capillaris." Cytologia. 58. 417-421 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] 大庭 喜八郎,河崎 久男,倉本 哲嗣,津村 義彦,戸丸 信弘,内田 煌二 他6名: "スギゲノムの遺伝子及びRFLPの連鎖分析におけるアイソザイム遺伝子座の橋渡し方式に関する研究I劣性標識遺伝子ホモ個体の利用と胚致死遺伝子による分離比の偏りの補正" 筑波大学農林技術センター演習林報告. 8. 139-273 (1992)

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2018-02-02  

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