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Studies of diversification of plasmid replication regions by genetic recombination

Research Project

Project/Area Number 04454001
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 遺伝学
Research InstitutionUniversity of Electro-Communications

Principal Investigator

MIZOBUCHI Kiyoshi  University of Electro-Communications, Faculty of Electro-Communications, Professor, 電気通信学部, 教授 (00092346)

Co-Investigator(Kenkyū-buntansha) 森脇 博子  東京大学, 理学部, 助手
Project Period (FY) 1992 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥6,500,000 (Direct Cost: ¥6,500,000)
Fiscal Year 1994: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1993: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1992: ¥4,000,000 (Direct Cost: ¥4,000,000)
KeywordsIncIalpha and IncFII plasmids / replication region / diversification / reciprocal recombination / RNA structures / Replication control / RNAの高次構造 / 複製領域の多様性 / 複製装置システム / 複製領域の構造 / P307プラスミド / ColIb-P9プラスミド / R100プラスミド / キメラレプリコン / 遺伝的組換え / IncFICプラスミド
Research Abstract

Living things are information systems that are highly organized by a variety of genes. In this project, we have studied how replication systems of some bacterial plasmids diverged during the course of evolution. The basic replicons of bacterial plasmids consist of two sets of genetic systems, the replication-structural system and the replication control system. Comparison of nucleotide sequences suggested that plasmids P307 (IncFI) and pMU2200 (IncZ) were generated by reciprocal recombination between ancestors of R100 (IncFII) and ColIb-P9 (IncIalpha) , or vice versa. The plasmids of each pair, P307/pMU2200 and R100/ColIb-P9, are structurally unrelated to each other. Based on this information, we constructed in vitro and analyzed P307-like chimeric replicons from ColIb-P9 and R100. When the replication-structural region of ColIb-P9 was combined with the whole replication control region of R100, the resultant replicon replicated stably as R100 did. These results revealed that the basic replicons of the plasmids diverged by exchanging their replication control systems. Thus, we propose that the replication control systems of plasmids, in some cases, evolved independently of their structural systems, although these two systems work together for maintaining the replication functions. We also studied that the reciprocal recombination was specified by the unique secondary structures of RNA involved in the control of expression of the genes encoding the replication initiator proteins.

Report

(4 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (17 results)

All Other

All Publications (17 results)

  • [Publications] 加藤 明彦: "Evolution of the replication regions of IncIα and IncFII plasmids by exchanging their replication control systems" DNA Research. 1. 201-212 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 中山 周一: "Cloning,sequencing,and expression of bacteriophage BF23 late genes 24 and 25 encoding tail proteins" J.Bacteriol.176. 7280-7290 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 飯田 章博: "Identification and characterization of the tktB gene encoding a second transketolase in Escherichia coli" J.Bacteriol.175. 5375-5383 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 由良 隆: "Systematic sequencing of the Escherichia coli geneome: analysis of the 0-2.4 min region" Nucleic Acids Res.20. 3303-3308 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 森 淳: "A transcription terminator signal necessary for plasmid ColIb-P9 replication" Mol.Microbiol.12(in press). (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 浅野 桂: "The RNA pseudoknot structure required for translation of the replication initiation protein gene,repZ,in plasmid ColIb-P9" J.Biol.Chem.(submitted). (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Akihiko Kato: "Evolution of the replication regions of IncIalpha and IncFII plasmids by exchanging their replication control systems" DNA Research. 1. 201-212 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Shu-ichi Nakayama: "Cloning, sequencing, and expression of bacteriophage BF23 late genes 24 and 25 encoding tail proteins" J.Bacteriol.176. 7280-7290 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Akihiro Iida: "Identification and characterization of the tktB gene encoding a second transketolase in Escherichia coli" J.Bacteriol.175. 5375-5383 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Takashi Yura: "Systematic sequencing of the Escherichia coli genome : analysis of the 0-2.4 min region" Nucleic Acids Res. 20. 3303-3308 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Atsushi Mori: "A transcriptional terminator signal necessary for plasmid ColIb-P9 replication" Mol.Microbiol.12, (in press). (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Katsura Asano: "The RNA pseudoknot structure required for translation of the replication initiation protein gene, repZ,in plasmid ColIb-P9" J.Biol.Chem. (submitted). (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 加藤明彦: "Evolution of the replication regions of IncIα and IncFII plasmids by exchanging their replication control systems" DNA Res.1. 201-212 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 中山周一: "Cloning, sequencing, and expression of bacteriophagr BF23 late genes 24 and 25 encoding tail proteins" J. Bacteriol.176. 7280-7290 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 森 淳: "A transcription terminator signal necessary for plasmid ColIb-P9 replication" Mol. Microbiol.12(in press). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Iida,A.: "Identification and characterization of the tktB gene encoding a second transketolase in Escherichia coli K-12" J.Bacteriology. 175. 5375-5383 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] 山田 秀明、別府 輝彦、深沢 俊夫編: "微生物の機能開発" 学会出版センター, 330 (1992)

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2016-04-21  

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