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Molecular analysis of the cooperative gene regulation by activators and RNA polymerase in Escherichia coli.

Research Project

Project/Area Number 04454613
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 分子生物学
Research InstitutionOsaka University

Principal Investigator

MAKINO Kozo  Osaka Univ., Res.Inst.for Microbial Deseases, Associate Prof., 微生物病研究所, 助教授 (20181620)

Co-Investigator(Kenkyū-buntansha) AMEMURA Mitsuko  Osaka Univ., Res.Inst.for Microbial Deseases, Technical Instructor, 微生物病研究所, 教務職員 (80159467)
Project Period (FY) 1992 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1994: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 1993: ¥1,000,000 (Direct Cost: ¥1,000,000)
KeywordsPhosphate regulon / PhoB / RNA polymerase / Sigma-24 / Sigma-38 / Acetyl-phosphate / extream heat shock / Stational phase / アクチベータ- / シグマ70(rpoD) / helix-turn-helix motif / CreS / アクチベーター / プロモーター
Research Abstract

(1) To solve the interaction between PhoB and RNA polymerase in transcription activation of the Pho regulon, we isolated RNA polymerase mutants which cause specific defect in transcription activation of the pho regulon. The mutations were mapped in the sigma-70 subunit of RNA polymerasae. In vitro and in vivo experiments using the mutant RNA polymerases indicated that the interaction site between PhoB and RNA polymerase is located in the sigma-70 subunit. The result was also supported by the experiment based on the site-directed mutagenesis of the sigma-70 subunit of RNA polymerase.
(2) We succeeded the isolation of the new Pho gene, phoH,of which expression is dependent on PhoB.Indentificaiton of the region of the promoter and the gene product, and functional analysis of the gene product were performed.
(3) We releaved that acetyl-phosphate, a high-enargy small intermediate, can phosphorylate PhoB.The form of PhoB phosphorylated by acetyl-phosphate is fully active in transcription activation of th Pho regulon as the form that is phosphorylated by the congnate kinases, PhoR and PhoM.
(4) To reveal the function of the extream heat shock sigma factor, sigma-24, we constructed a strain that has a deletion of the sigma-24 gene. The strain is leathal at high temperature. The result indicates that the sigma-24 is essential to growth at high temperature.
(5) The sigma-38 factor that is specific in stational phase of bacterial growth. To identify the specific sequences of the statianl phase specific promoters, we isolated a lot of the mutant promoters, which are not recognized by the RNA polymerase containing the sigma-38, by PCR mutagenesis. With futher analyzes, we conclude that the RNA polymerase containing the sigma-38 recongnizes the-10 sequence, but does not recognize the-35 sequence.

Report

(4 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Makino,K.: "Role of the σ^<70> subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli." Genes Dev.7. 149-160 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kim,S.-K.: "Molecular analysis of the phoH gene,belonging to the phosphate regulon in Escherichia coli." J.Bacteriol.175. 1316-1324 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kumar,A.: "Role of the Sigma^<70> subunit of Escherichia coli RNA polymerase in transcription activation." J.Mol.Biol.235. 405-413 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Suzuki,M.: "The DNA binding domains of transcription factors,PhoB and OmpR,adopt the same folding as that of histone H5 and bind to RNA polymerase using the ends of two α-helices." Proc.Japan Acad.71B. 132-137 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hiratsu,K.: "The rpoE gene of Escherichia coli,which encods σ^E,is essential for bacterial growth at high temperature." J.Bacteriol.177. 2918-2922 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kim,S.-K.: "Mutational analysis of the first helix of region 4.2 of the σ^<70> subunit of Escherichia coli RNA polymerase in transcriptional activation by activator protein PhoB." Mol.Gen.Gent.248. 1-8 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hiratsu,K.: "Autophosphorylation and activation of the transcriptional activator PhoB of Escherichia coli by acetyl phosphate in vitro." Gene. (in press). (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hiratsu,K.: "Mode of promoter recognition by the Escherichia coli RNA polymerase holoenzyme containing the σ^S subunit : identification of the recognition sequence of the fic promoter." Mol.Microbiol.(in press). (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Makino,K.: "Adenine Nucleotides in Cellular Energy Transfer and Signal Transduction." Birkhauser Verlag,Basel/Switzerland., 476 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Makino,K.: "Phosphate in Microorganisms : Cellular and Molecular Biology." American Society for Microbiology,Washington,DC., 347 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Shinagawa,H.: "Phosphate in Microorganisms : Cellular and Molecular Biology." American Society for Microbiology,Washington,DC., 347 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 牧野耕三: "Bio Science用語ライブラリー:転写因子" 羊土社, 213 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Makino, K., M.Amenura, S-K Kim, A.Nakata, and H.Shinagawa.: "Role of the sigma^<70> subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli." Genes Dev.7. 149-160 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kim, S-K., K.Makino, M.Amemura, H.Shinagawa and A.Nakata.: "Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli." J.Bacteriol.175. 1316-1324 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kumar, A., B.Grimes, N.Fujita, K.Makino, R.A.Malloch, R.S.Hayward and A.Ishihama.: "Role of Shigma^<70> subunit of Escherichia coli RNA polymerase in transcription activation." J.Mol.Biol.235. 405-413 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Suzuki, M.and K.Nakino: "The DNA binding domains of transcription factors, PhoB and OmpR,adopt the same folding as that of histone H5 and bind to RNA polymerase using the ends of two a-helices." Proc.Japan Acad.71B. 132-137 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hiratsu, K., M.Amemura, H.Nashimoto, H.Shinagawa, and K.Makino.: "The rpoE gene of Escherichia coli, which encods sigma^E, is essintial for bacterial growth at high temperature" J.Bacteriol.177. 2918-2922 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kim, S.-K., K.Makino, M.Amemura, A.Nakata and H.Shinagawa.: "Mutational analysis of the role of the first helix of region 4.2 of the sigma^<70> subunit of Escherichia coli RNA polymerase in transcriptional activation by activator protein PhoB." Mol.Gen.Gent.248. 1-8 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hiratsu, K., A.Nakata, H.Shinagawa and K.Makino.: "Autophosphorylation and activation of the transcriptional activator PhoB of Escherichia coli by acetyl Phosphate in vitro." Gene. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hiratsu, K., H.Shinagawa and K.Makino.: "Mode of promoter recongnition by the Escherichia coli RNA polymerase holoenzyme containing the sigma^s subunit : indentification of the recognition sequence of the fic promoter." Mol.Microbiol.(in press).

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Kumar,A.: "Role of the Sigma subunit of Escherichia coli RNA polymerase in transcription activation." J.Mol.Biol.235. 405-413 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Kim,S.-K.: "Mutational analysis of the first of region 4.2 of the σ70 subunit of Escherichiacoli RNA polymerase in transcriptional activation by activator protein PhoB." Mol.Gen.Gent.(in press). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Hiratsu,K.: "The rpoE gene of Escherichia coli encoding σE is essential for bacterial growth at high temperature." J.Bacteriol.(in press). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Hiratsu,K.: "Autophosphorylation and activation of the transcriptional activator PhoB of Escherichia coli by acetyl phosphate in vitro." Gene. (in press). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Makino,K.: "Phosphate in Microorganisms:Cellular and Molecular Biology." American Society for Microbiology,Washington,DC., 347 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Shinagawa,H.: "Phosphate in Microorganisms:Cellular and Molecular Biology." American Society for Microbiology,Washington,DC., 347 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Makino,K.: "Role of the σ^<70> subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli" Genes & Dev.7. 149-160 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Kim,S-K.: "Molecular analysis of the phoH gene,belonging to the phosphate regulon in Escherichia coli" J.Bacteriol.175. 1316-1324 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Kumar,A.: "Role of the Sigma^<70> subunit of Escherichia coli RNA polymerase in transcription activation" J.Mol.Biol.235. 405-413 (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Makino,K.: "Signal transduction of the phosphate regulon in Escherichia coli mediated by phosphorylayion." Adenine Nucleotides in Cellular Energy Transfer and Signal Transduction (S.Papa,A.Azzi and J.M.Tager,eds).Birkhauser Verlag,Basel/Switzerland.191-200 (19)

    • Related Report
      1992 Annual Research Report
  • [Publications] Makino,K.: "Role of the σ^<70> subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli." Genes & Dev.7. 149-160 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] Kim,S-K.: "Molecular analysis of the phoH gene,belonging to the phosphate regulon in Escherichia coli." J.Bacteriol.175. 1316-1324 (1993)

    • Related Report
      1992 Annual Research Report

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Published: 1993-04-01   Modified: 2016-04-21  

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