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Identification of new genes from YAC clones involved in cell development in the HLA region

Research Project

Project/Area Number 04455024
Research Category

Grant-in-Aid for General Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 広領域
Research InstitutionTokai University School of Medicine

Principal Investigator

INOKO Hidetoshi  Tokai University School of Medicine, Professor, 医学部, 教授 (10101932)

Co-Investigator(Kenkyū-buntansha) ANDO Asako  Tokai University School of Medicine, Lecturer, 医学部, 講師 (40101935)
TSUJI Kimiyoshi  Tokai University School of Medicine, Professor, 医学部, 教授 (30055834)
Project Period (FY) 1992 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥5,700,000 (Direct Cost: ¥5,700,000)
Fiscal Year 1994: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1993: ¥1,500,000 (Direct Cost: ¥1,500,000)
Fiscal Year 1992: ¥2,700,000 (Direct Cost: ¥2,700,000)
KeywordsMHC / HLA / YAC Clone / cDNA Clone / t complex / retinoid X receptor / homeobox / Notch family / 主要組織適合抗原 / YACクローン / 低分子量G蛋白質 / キニノーゲン / アルコール脱水素酵素 / リボソームタンパク / retinoid x receptor / T / t遺伝子 / キネシン / グリコシル化蛋白レセプター / YACベクター / 疾患感受性 / AT対GC比
Research Abstract

We have cloned the human MHC (HLA) region by YAC,cosmid and phage vectors, constructed the physical map by lining up their contigs and searched for new expressed genes by cDNA isolation and genomic sequencing analysis. On the centromeric side of the class ll region which corresponds to the mouse t complex region, 8 new genes were identified, namely HSET (a kinesin-like gene) -HKE2 (guanine nucleotide dissociation stimulator-like gene) -HKE3 (a ribosome S18 subunit gene) -HKE6 (a alcohol dehydrogenase-like gene) -HKE4 (a kininogen-like gene) -RXRB (a retinoid X receptor b gene) -HKE5 (an unknown gene) -COL11A2 (a a2 collagen X1) from the centromeric side. An uncharacterized 400 kb region harboring the junction between the class ll and class lll regions, 4 new genes, TN-X (a tenascin-like gene), RAGE (a receptor gene for nonenzymatically glycosylated protein end product), HOX12 (a PBX-family homeobox gene) and Notch3 (a human homologue of the mouse int-3 gene belonging to a Notch family) were identified in the order of from the teromeric to centromeric sides. The RXRB,HOX12 and Notch3 genes are candidate genes responsible for some embryonic and cell development. Further characterization of these genes will be very important to elucidate the molecular mechanism of cell regulation at the embryonic development stage.

Report

(4 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (43 results)

All Other

All Publications (43 results)

  • [Publications] Janatipour M,et al.: "Search for MHC associated genesin human :Five new genes centromeric to HLA-DP with yet unknown functions." Immunogenetics. 35. 272-278 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Matsumoto K,et al.: "Cluster of fibronectin type III repeat found in the human major histocompatibility complex class III region shows the highest homology with the repeats in an extracellular matrix protein tenascin." Genomics. 12. 485-491 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Sugimura K,et al.: "Analysis of genes within the HLA region affecting susceptibility to Ulcerative Eolitis." Hum.Immunol. 36. 112-118 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Ando A,et al.: "Cloning of a new kinesin-related gene located at the centromeric end of the human MHC region." Immunogenetics. 39. 194-200 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Inoko H,et al.: "Role of human leukocyte antigens and T lymphocytes and in the and immune response." Annal of Cancer Research Therapy. 2. 173-191 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Sugaya K,et al.: "Three human MHC class III genes near the junction with the class II locus." Genomics. 23. 408-419 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 猪子英敏: "臨床遺伝医学[I] HLAと疾患" 診断と診療社, 166-167 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Inoko H,et al.: "Handbook for HLA Tissue-Typing Laboratories" CRC Press., 1-70 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Janatipour M,et al.: "Search for MHC associated genes in human : Five new genes centromeric to HLA-DP with yet unknown functions." Immunogenetics. 35. 272-278 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Matsumoto K,et al.: "Cluster of fibronectin type III repeat found in the human major histocompatibility comples class III region shows the highest homology with the repeats in an extracellular matrix protein, tenascin." Genomics. 12. 485-491 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Matsumoto K,et al.: "Extracellular matrix protein tenascin-like gene found in human MHC class III regiom." Immunogenetics. 36. 400-403 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Seki T,et al.: "Human leukocyte antigens class II molecules and autoimmune hepatitis susceptibility in Japanese patients." Gastroenterol. 103. 1041-1047 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Ando H,et al.: "Identification of alloantisera reacting with HLA-C blank (Cx52) using a mouse L cell transfected with the HLA-Cw^* 1201 allele." Hum.Immunol. 36. 76-80 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Sugimura K,et al.: "Analysis of genes within the HLA region affecting susceptibility to Ulcerative Colitis." Hum.Immunol. 36. 112-118 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Horiki T,et al.: "HLA-DPB1 allele associates with early-onset Myathenia Graves in Japan." Neurol. 43. 771-774 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Yamagata K,et al.: "Over expression of HLA Class I antigen reduces insulin secretion in pancreatic b cells (RINm5F) : Evidence for a non-immune mechanism." Chemical Pathology and Pharmacology. 81. 299-308 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Ando A,et al.: "Cloning of a new kinesin-related gene located at the centromeric end of the human MHC region." Immunogenetics. 39. 194-200 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Inoko H,et al.: "Role of human leukocyte antigens and T lymphocytes and in the and immune response." Annals of Cancer Research Therapy. 2. 173-191 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Sugaya K,et al.: "Three human MHC class III genes near the junction with the class II locus : gene for receptor of advanced glycosylation end products, HOX12 homeobox gene and a Notch-homolog, human counterpart of mouse mammary tumor gene int3." Genomics. 23. 408-419 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Inoko,H.et al: "Role of human leukocyte antigens and T lymphocytes and in the immune response." Annals of Cancer Research and Therapy. 2. 173-191 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Shindo,Y.et al: "Complete association of the HLA DRBI^☆04 and DQBI^☆04 alleles with Vogt-Koyanagi Harada's disase." Hum.Immunol. 39. 169-176 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Onuma,H.et al: "Association of HLA-DPBI^☆0501 with early-onset Graves' disease in Japanese." Hum.immunol. 39. 195-201 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Ishihara,M.et al: "Molecular genetic studies of HLA class II alleles in sarcoidosios." Tissue Antigens. 43. 238-241 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Ogawa,K.et al: "A novel HLA-DPBI allele,DPBI^☆3601(DPBI^☆KT)." Tissue Antigens. 44. 134-136 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Sugaya,K.et al: "Three human MHC class III genes near the junction with the class II locus." Genomics.23. 408-419 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 清沢研道.他: "肝疾患研究の進歩X(第13回肝臓シンポジウム編)" メディカルレビュー社, 35-44 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 高田肇.他: "《外科臨床ハンドブック5》外科臨床の分子生物学" 中山書店, 251-266 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Sigimura K,et al.: "Analysis of genes within the HLA region affecting susceptibility to Ulcerative Colitis." Hum.Immunol.36. 112-118 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Seki T.et al.: "Association of primary biliary cirrhosis with human leukocyte antigen-DPB1^+0501 in Japanese patients." Hepatol.18. 73-78 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Horiki T.et al.: "HLA-DPB1 allele associates with early-onset Myathenia Graves in Lapan." Neurol.43. 771-774 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Nakanishi K,et al.: "Association of HLA-A24 with complete destruction in IDDM." Diabetes. 42. 1086-1093 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Mizuki N,et al.: "Identification of a new HLA-DPB1 allele detected by PCR-RFLP and its nucleotaide sequence determination by directsequencing after PCR ampification." Tissue Antigens. 41. 259-262 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Ando A et al.: "Cloning of a new Kinesin-related gene located at the centromeric end of the human MHC reginon" Immunogenetics. 39. 194-200 (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Inoko H.et al.: "Handbook for HLA Tissue-typing Laboratories.Bidwell J,Hui KM),PCR-RELP" CRC Press,Boca Raton, 1-70 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] 猪子英俊: "免疫学ブックレット第7巻(猪子英俊編著)、移植と免疫" 中外医学社,東京, 1-182 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] M.Janatipour: "Search forMHC associated genes in huma n:five new genes centromeric to HLA-DP with yet unknown functions." Immunogenetics. 35. 272-278 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] K.Matsumoto: "Cluster of fibronectin type3 repeat found in the human major histocompatiointy compllex classIII region shows the highest honology with repeats in an extracellular matrix protein,tenascin." Genomics. 12. 485-491 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] P.Zhou: "HLA-DQβ chain canpresent mouse endogenous prorirus MTV-9 product and clonally delete Tcr Vβ5^+ and Vβ11^+T cells in tramsgenic mouse" Immunogenetics. 35. 219-233 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] K.Matsumoto: "Extracellular matrix protein tenascin-like gene found in human MHC classIII region" Immunogenetics. 36. 400-403 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] T.Naruse: "Strong and wrique associations of HLA-DPBI alleles with other HLA antigens in a Japanese population" Tissue Antigens. 39. 276-279 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] 安藤 麻子: "HLA領域の遺伝子構成" 蛋白質核酸酵素. 38. 392-402 (1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] A.Ando: "HLA 1991" Oxford University Press, 689 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] 猪子 英俊: "自己と非自己の識別" 中外医学社,

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2016-04-21  

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