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Development of a high-sensitive three-dimensional fluorescence stopped-flow

Research Project

Project/Area Number 04557114
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field 医学一般
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

ORII Yutaka  Kyoto University, Graduate School of Medicine Associated Professor, 医学部, 助教授 (60028149)

Co-Investigator(Kenkyū-buntansha) NAGAMURA Toshihiko  UNISOKU Company, Ltd.President Researcher, 研究員
Project Period (FY) 1992 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥17,100,000 (Direct Cost: ¥17,100,000)
Fiscal Year 1994: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1993: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1992: ¥13,100,000 (Direct Cost: ¥13,100,000)
Keywordsfluorescencestopped-flow / three-dimensional display of spectra / data analysis / SVD analysis / microscopic rate constant / differential equation / 高感度蛍光検出 / イメジインテンシファイアー / 抗原抗体反応
Research Abstract

Fortified with an image-intensifier in front of the detector and using a 150 W Xenon lamp for excitation, an instrument that can record 512 fluorescence spectra with a time resolution of 10 ms was constructed. By introduction of a Xenon flash lamp (Hamamatsu Photonics, L-4633,1 microsecond pulse width), the time resolution was improved to 1 msec. This allows the excitation of a sample solution at pre-programd times with a 1-ms time interval at least after initiation of the reaction, and consecutive 173 fluorescence spectra are recorded. This instrument can be set up to follow the fluorescence change with time at a fixed wavelength, and the software developed determines the kinetic parameter easily.
Recorded fluorescence spectra can be displayd three-dimensionally with wavelength, reaction time, and fluorescence intensity as orthogonal axs, respectively. The fluorescence intensity can be converted into pseudo-colors and expressed by contours, too. The softwares for data analysis and disp … More lay were developed by using various software tools for numerical analysis, especially MATLAB.Usually 512*512 data points collected as 512 consecutive spectra are processed by the SVD analysis to obtain the minimal number of the component spectra. With an assumed reaction model that descrives all of the participating reaction species and the initial values for microscopic rate constants for the model, the formation and decay of the reaction intermediates are derived by solving differential equations, and stored in a matrix. The spectra of the reaction intermediates are derived by using pseudoinverse, and the predicted spectral changes are constructed using the time matrix as well as the derived spectra. Optimization is then carried out to minimize the residuals between the experimental and calculated spectra to derive the kinetic constants and the spectra of the intermediates.
This technnique can be applied universally to time-resolved spectral change as proved in this study. An application of this technique to the antigen-antibody reaction will be promoted by selecting appropriate reactions. Less

Report

(4 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (29 results)

All Other

All Publications (29 results)

  • [Publications] Orii, Y.: "Immediate reduction of cytochrome c by photoexcited NADH:Reaction mechanism as revealed by flow-flash and rapid-scan studies." Biochemistry. 32. 11910-11914 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Miki, T., Miki, M., & Orii, Y.: "Membrane potential linked reversed electron transfer in the beef heart cytochrome bc1 complex reconstituted into potassium-loaded vesicles." J.Biol.Chem.272. 1827-1833 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y., Miki, T., & Kakinuma, K.: "Kinetic characterization of the redox components in solubilized membranes from pig neutrophils:Reduction with dithionite and" Photochem.Photobiol.61. 261-268 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y.et al.: "Facilitated intramolecular electron transfer in the Escherichiae coli bo-type ubiquinol oxidase requires chloride" Biochemistry. 34. 1127-1132 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y., & Miki, T.: "Oxidation process of bovine heart ubiquinol cytochrome c reductase as studied by stopped-flow rapid-scan spectrophotometry・・・" J.Biol.Chem.272. 17594-17604 (1997)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y.: "Determination and novel features of the absolute absorption spectra of the heme a moities in cytochrome c oxidase" J.Bioenerg.Biomembr.30. 47-53 (1998)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 折井 豊 (共著): "蛋白質の時代" 共立出版社, 250 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y.: "Immediate reduction of cytochrome c by photoexcied NADH : Reaction mechanism as revealed by flow-flasjh and rapid scan studies" Biochemistry. 32. 11910-11914 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Miki, T., Miki, M., & Orii, Y.: "Membrane potential linked reversed electron transfer in the beef heart cytochrome bc1 complex reconstituted into potassium-loaded" J.Biol.Chem.272. 1827-1833 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y., Miki, T., & Kakinuma, K.: "Kinetic characterization of the redox components in solubilized membranes from pig neutrophils : Reduction with dithionite and photoexcited NAD (P) H" Photochem.Photobiol.61. 261-268 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y., Mogi, T., Sato-Watanabe, M., Hirano, T., & Anraku, Y.: "Facilitated intramolecular electron transfer in the Escherichiae coli bo-type ubiquinol oxidase requires" Biochemistry. 34. 1127-1132 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y., & Miki, T.: "Oxidation process of bovine heart ubiquinol-cytochrome c reductase as studied by stopped-flow raped-scan spectrophotometry and simulations based on the mechanistic Q cycle model" J.Biol.Chem.272. 17594-17604 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii, Y.: "Determination and novel features of the absolute absorption spectra of the heme a moieties in cytochrome oxidase" J.Bioenerg.Biomembr.30. 47-53 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Orii,y.,Miki,T.,Kakinuma,K.: "Kinetic characberization of the redox componento in solubilized mempranes from porcineneutrophils:Reducfion with dithiouite・・・" Photochem.Protobiol.(印刷中). (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Orii,Y.,Mogi,T.,Sato-Watanabe,M.,et al.: "Facilitotcd In tcamolecular elcctson fransper in the Eschesichia coli bo-type ubiquinol oxidase requires chloride" Biochemistuy. 34. 1127-1132 (1995)

    • Related Report
      1994 Annual Research Report
  • [Publications] Orii,Y.,Mogi,T.,Kawasaki,M.,Anrapu,Y.: "Facibitated tnfiamoleculai elecpon tianspr in cytochsome botype ubiguinoloxidese in itiotcd upon reaction of the pully seduced euzyme・・・" FEBS Lett.352. 151-154 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 折井 豊: "電子伝達系酵素のダイナミクス" 蛋白質核酸酵素. 39. 1152-1160 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Isogai,Y.,Iizuka,T.,Makino,R.,Iyanagi,T.,& Orii,Y.: "Superoxide-producing cytochrome b.Enzymatic and electron paramagentic resonance properties of cytochrome b_<558> purified from neutrophils" J.Biol.Chem.268. 4025-4031 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Orii,Y.: "Immediate reduction of cytochrome c by photoexcited NADH:Reaction mechanism as revealed by flow-flash and rapid-scan studies" Biochemistry. 32. 11910-11914 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Miki,T.,Miki,M.,& Orii,Y.: "Membrane potential-linked reversed electron transfer in the beef heart cytochrome bc_1 complex reconstituted into potassium-loaded phospholipid vesicles" J.Biol.Chem.269. 1827-1833 (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Poole,R.K.,Ioannidis,N.,& Orii,Y.: "Reaction of the Escherichia coli flavohaemoglobin(Hmp)with oxygen and reduced nicotinamide adenine dinucleotide:evidence for oxygen switching of flavin oxidoreduction and a mechanism for oxygen sensing" Proc.Roy.Soc.London. (印刷中).

    • Related Report
      1993 Annual Research Report
  • [Publications] 折井 豊: "NAD(p)・ラジカルを用いたチトクロム酸化酵素の還元" 生化学. 65. 774 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] 折井豊・三木俊明・柿沼カツ子: "好中球シトリロムb-558の光励起NAD(p)Hによる還元" 生化学. 65. 945 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] 折井 豊(共著): "蛋白質の時代(電子伝達系酵素のダイナミックス)" 共出出版社(印刷中), (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Y.Orii: "The oxygerakd flavohaemoglobin from Esheriohiae cole:Evidence from photodissociation and rapid-scaw studies for two kinetic and spectral forms." Biochem.Biophys.Res.Commun.187. 94-100 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Y.Orii: "Acceleration of the oxygen reaction in Cua-deficient Nitrosomonas europaea cytochrome coxidase as revealed by the flow-flash measurement" Biochem.Biophys.Res.Commun.182. 1264-1269 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Y.Isogai: "Superoxide-producing b-cybochromes Enzymatic and electron paramagnetic resonance properties of cytochrome b_<558> Purified from Neutrophils." J.Biol.Chem.(1993)

    • Related Report
      1992 Annual Research Report
  • [Publications] 折井 豊: "チトクロム酸化酵素ヘムa成分の絶対吸収スペクトル" 生化学. 64. 727 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] 折井 豊: "ヘムたんぱく高速反応のラピッドスキャン法による解析" 生物物理.

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2016-04-21  

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