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Functional Structure of the GTPase Domain within 28S Ribosomal RNA (Analysis of a Conformational Epitope on RNA Recognized by a Unique Autoantibody)

Research Project

Project/Area Number 04670140
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field General medical chemistry
Research InstitutionNIIGATA UNIVERSITY

Principal Investigator

UCHIUMI Toshio  Niigata University School of Nedicine (Assistant Professor), 医学部, 助手 (50143764)

Project Period (FY) 1992 – 1994
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥2,200,000 (Direct Cost: ¥2,200,000)
Fiscal Year 1994: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 1993: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 1992: ¥700,000 (Direct Cost: ¥700,000)
KeywordsRIBOSOME / RIBOSOMAL RNA / GTPASE DOMAINI / ANTI-RNA ANTIBODY / AUTOANTIBODY / AUTOANTIGEN / SLE / リボソームタンパク質 / NMR / リボソーム28S RNA / RNA自己抗原 / RNAータンパク質相互作用
Research Abstract

Ribosomal RNA (rRNA) is highly conserved macromolecule. Currnet evidence shows a functional role of rRNA in protein biosynthesis. However, almost nothing is known about the detailed functional structure of the rRNA and mechanism of its action in the process of protein synthesis. In 1991, we found a site-specific anti-rRNA autoantibody (anti-28S) in sera from patients with autoimmune disease. Anti-28S strongly inhibits protein synthesis at the step of interaction between elongation factors and ribosomes. In this project during three years, 1992 to 1994, we have studied on the structure and function of the antibody-binding region of rRNA using anti-28as a probe. We have reported following findings and clarified involvement of the RNA domain in interaction with elongation factors and the associated GTP hydrolysis :
(1) Anti-28S specifically protects a region termed the "GTPase domain" within 28S rRNA from RNase digestion and chemical modifications. Four bases including G-1959 were identified as elements involved in formation of the autoimmune epitope.
(2) Ribosomal proteins P1, P2, P0, and L12 bind to be GPTase domain and affect the tertiary structure of the RNA domain.
(3) Prokaryotic ribosomes shows very low accessibility to anti-28S.However, a base substitution of A-1067 to G at the position equivalent to eukaryotic 1959 site causes high anti-28S accessibility of the ribosomes, indicating G-1959 is important for ansi-28S recognition.
(4) G-1959 is also protected by elongation factor EF-2 from chmical modification with dimethy1 sulfate, suggesting that anti-28S directly blocks the EF-2 action to the GTPase domain.
(5) Anti-28S activity is detected in sera from 17 % patients with SLE.All the anti-28S sera also contain anti-P antibody reactive with tha domain-associating proteins P1, P2, and P0.

Report

(4 results)
  • 1994 Annual Research Report   Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] Toshio Uchiumi: "Direct Evidence for Interaction of the Conserved GTPase Domain within 28S RNA with Mammalian Ribosomal Acidic Phosphoproteins and L12" J.Biol.Chem.267. 19179-19185 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Takako Furukawa: "Ribosomal Protein P2,a Novel Iron-Binding Protein." Arch.Biochem.Biophys.298. 182-186 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Toshio Uchiumi: "A Functional Site of the GTPase-associated Center within 28S ribosomal RNA probed with an Anti-RNA Autoantibody." EMBO J.13. 3389-3394 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Takehiro Sato: "Serological Association of Lupus Autoantibodies to a Limited Functinal Domain of 28S Ribosomal RNA and to the Ribosomal Proteins Bound to the Domain." Clin.Exp.Immunol.98. 35-39 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 劔邦夫: "真核細胞の酸性リボソームタンパク質の構造と機能." 生化学. 66. 342-354 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] 佐藤健比呂: "全身性エリテマトーデス患者血清中のリボソーム構成成分に対する自己抗体の解析" 新潟医学会雑誌. 108. 194-199 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T.Uchiumi and R.Kominami: "Direct Evidence for Interaction of the Conserved GTPase Domain within 28S RNA with Mammalian Ribosomal Acidic Phosphoproteins and L12." J.Biol.Chem. 267. 1917-1918 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T.Furukawa, T.Uchiumi, R.Tokunaga and S.Taketani: "Ribosomal Protein P2, a Novel Iron-Binding Protein." Arch.Biochem.Biophys.298. 182-186 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T.Uchiumi and R.Kominami: "A Functional Site of the GTPase-associated Center within 28S ribosomal RNA probed with an Anri-RNA Autoantibody." EMBO J. 13. 3389-3394 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T.Sato, T.Uchiumi, M.Arakawa and R.Kominami: "Serological Association of Lupus Autoantibodies to a Limited Functional Domain of 28S Ribosomal RNA and to the Ribosomal Proteins Bound to the Domein." Clin.Exp., Immunol. 98. 35-39 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] T.Sato, T.Uchiumi, R.Kominami and M.Arakawa: "Anti-Ribosomal Autoantibodies in Patients with Systemic Lupus Erythematosus." Niigata Med.J. 108. 194-199 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] K.Tsurugi and T.Uchiumu: "Structure and Function of Acidic Ribosomal Proteins of Eukaryotic Cells." Seikagaku. 66. 342-354 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] S.Odani, Y.Okazaki, C.Kato, T.Uchiumi and Y.Takahashi: "On the Molecular Origin of charge Heterogeneity of Rat Liver Fatty Acid-Binding Protein (Z-protein)." Arch.Biochem.Biophys.309. 81-84 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Y.Honma, M.Niimi, T.Uchiumi, Y.Takahashi and S.Odani: "Evidence for Conformational Change of Fatty Acid-Binding Protein Accompanying Binding of Hyydrophobic Ligands." J.Biochem. 116. 1025-1029 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Uchiumi,T.and Kominami,K.: "A Functional Site of the GTPase-associated Center within 28S ribosomal RNA probed with an Anti-RNA Autoantibody." EMBO J.13. 3389-3394 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Sato,T.et al.: "Serological Association of Lupus Autoantibodies to a Limited Functional Domain of 28S Ribosomal RNA and to the Ribosomal Proteins Bound to the Domain." Clin.Exp.Immunol.98. 35-39 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 劔邦夫,内海利男: "真核細胞の酸性リボソームタンパク質の構造と機能." 生化学. 66. 342-354 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 佐藤健比呂ら: "全身性エリテマトーデス患者血清中のリボソーム構成成分に対する自己抗体の解析." 新潟医学会雑誌. 108. 194-199 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Odani,S.et al.: "On the Molecular Origin of Charge Heterogenity of Rat Liver Fatty AcidBindingPtotein(Z-protein)." Arch.Biochem.Biophys.309. 81-84 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Hinma,Y.et al.: "Evidence for Conformational Change of Fatty Acid-Binding Protein Accompanying Binding of Hydrophobic Ligands." J.Biochem.116. 1025-1029 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Odani,S.et al.: "On the Molecular Origin of Charge Heterogeneity of Rat Liver Fatty Acid-Binding Protein(Z-protein)" Arch.Biochem.Biophys.308. 91-84 (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] 剱邦夫,内海利男: "真核細胞の酸性リボソームタンパク質の構造と機能" 生化学(総説). 66(印刷中). (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Uchiumi,Toshio: "Direct Evidence for Interaction of the Conserved GTPase Domain within 28S RNA with Mammalian Ribosomal Acidic Phophoproteins and L12" Journal of Biological Chemistry. 267. 19179-19185 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Furukawa,Takako: "Ribosomal Protein P2,a Novel Iron-Binding Protein" Archives of Biochemistry and Biophysics. 298. 182-186 (1992)

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2016-04-21  

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