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RECOGNITION MECHANISM OF tRNA FOR AMINOACYL-tRNA SYNTHETASE

Research Project

Project/Area Number 04680177
Research Category

Grant-in-Aid for General Scientific Research (C)

Allocation TypeSingle-year Grants
Research Field 物質生物化学
Research InstitutionInstitute of Space and Astronautical Science

Principal Investigator

HASEGAWA Tsunemi  INSTITUTE OF SPACE AND ASTRONAUTICAL SCIENCE PLANETARY SCIENCE DIVISION,ASSOCIATE PROFESSOR, 惑星研究系, 助教授 (60095023)

Co-Investigator(Kenkyū-buntansha) HIMENO Hyouta  HIROSAKI UNIVERSITY,DEPARTMENT OF BIOLOGY,ASSISTANT PROFESSOR, 理学部, 助教授 (80208785)
SHIMIZU Mikio  INSTITUTE OF SPACE AND ASTRONAUTICAL SCIENCE PLANETARY SCIENCE DIVISION,PROFESSO, 惑星研究系, 教授 (90017179)
Project Period (FY) 1992 – 1993
Project Status Completed (Fiscal Year 1994)
Budget Amount *help
¥1,700,000 (Direct Cost: ¥1,700,000)
Fiscal Year 1993: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 1992: ¥1,000,000 (Direct Cost: ¥1,000,000)
KeywordstRNA identity / tRNA^<Thr> / tRNA^<Asp> / tRNA^<Lys> / tRNA^<Arg> / tRNA^<Pro> / class II tRNA / T7 transcript / Identity / Aminoacyl-tRNA synthetase / E.Coli / Discriminator base / Anticodon / Aminoacylation / in vitro Transcription / tRNA / Amineacyl-tRNA synthelase / Discriminator Dase / In Vitvo transcription
Research Abstract

To investigate the recognition and discrimination sites of E.coli several tRANs for each aminoacyl-tRNA synthetase (ARS), various unmodified mutant transcripts were prepared by in vitro transcription system with T7 RNA polymerase. In the case of tRNA^<Thr>, G_<35> and U_<36> of anticodon and two base pairs of acceptor stem, G_1-C_<72> and C_2-G_<71>, were the recognition sites by ThrRS.Discriminator base, A73, was not involved in the charging activity. Other class I tRNAs, including aspartic acid, arginine, lysine and proline tRNAs, were recognized both sites of anticodon and discriminator base by each cognate ARS.Interesting recognition sites were determined such as A_<20> in variable pocket of tRNA^<Arg>, modified U_<34> in the anticodon of tRNA^<Lsy>, G_<37> in anticodon loop, G_<49> in TPSI stem, G_<72> in the acceptor stem and U_<17A> in the D-loop of tRNA^<Pro>, respectively. Recognition and discrimination sites of classII tRNAs having a long variable arm, tRNA^<Leu> and tRNA^<Ser>, were also examined. The discriminator base A_<73> and A_<14> in D-loop, but not the anticodon, were found to serve as critical recognition elements of tRNA^<Leu>.In case of tRNA^<Ser>, all of the characteristic nucleotide of tRNA^<Ser> were not involved in recognition by SerRS.The SerRS selectively recognizes tRNA^<Ser> on the basis of its characteristic tertiary structure rather than the nucleotides specific to tRNA^<Ser>.

Report

(3 results)
  • 1994 Final Research Report Summary
  • 1993 Annual Research Report
  • 1992 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] Hasegawa,T.et al.: "Identity determinants of E.coli threonine tRNA." Biochemical and Biophysical Research Communications. 184. 478-484 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Tamura,K.et al.: "In vitro study of E.coli tRNA^<Arg> and tRNA^<Lys> identity elements." Nucleic Acids Research. 20. 2335-2339 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Shimizu,M.et al.: "The role of anticodon bases and the discriminator nucleotide in the recognition of some E.coli tRNAs by their aminoacyl-tRNA・・・・・" Journal of Molecular Evolution. 35. 436-443 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Nameki,N.et al.: "Escherichia coli tRNA^<Asp> recognition mechanism differing from that of the yeast system." Biochemical and Biophysical Research Communications. 189. 856-862 (1992)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Asahara,H.et al.: "Recognition nucleotides of Escherichia coli tRNA^<Leu> and its elements facilitating discrimination from tRNA^<Ser> and tRNA^<Tyr>." Journal of Molecular Biology. 231. 219-229 (1993)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Asahara,H.et al.: "Escherichia coli seryl-tRNA synthetase recognizes tRNA^<Ser> by its characteristic tertiary structure." Journal of Molecular Biology. 236. 738-748 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hasegawa, T., Miyano, M., Himeno, H., Sano, Y., Kumura, K.and Shimizu, M.: "Identity determinants of E.coli threonine tRNA." Biochem.Biophys.Res.Commun.184 (1). 478-484 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Tamura, K., Himeno, H., Asahara, H., Hasegawa, T.and Shimizu, M.: "In vitro study of E.coli tRNA^<Arg> and tRNA^<Lys> identity." Nucleic Acids Res.20 (9). 2335-2339 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Shimizu, M., Asahara, H., Tamura, K., Hasegawa, T.and Himeno, H.: "The role of anticodon base and the discriminator nucleotide in the recognition of some E.coli tRNAs by their aminoacyl-tRNA synthetases." J.Mol.Evol.35 (5). 436-443 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Nameki, N., Tamura, K., Himeno, H., Asahara, H., Hasegawa, T.and Shimizu, M.: "Escherichia coli tRNA^<Asp> recognition mechanism differing from that of the yeast system." Biochem.Biophys.Res.Commun.189 (2). 856-862 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Asahara, H., Himeno, H., Tamura, K., Hasegawa, T., Watanabe, K.and Shimizu, M.: "Recognition nucleotides of Escherichia coli tRNA^<Leu> and its elements facilitating discrimination from tRNA^<Ser> and tRNA^<Tyr>." J.Mol.Biol.231 (2). 219-229 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Asahara, H., Himeno, H., Tamura, K., Nameki, N., Hasegawa, T.and Shimizu, M.: "Escherichia coli seryl-tRNA synthetase recognizes tRNA^<Ser> by its characteristic tertiary structure." J.Mol.Biol.236 (3). 738-748 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1994 Final Research Report Summary
  • [Publications] Hasegawa,T.: "Identity determinants of E.coli threonine tRNA." Biochemical and Biophysical Research Communications. 184. 478-484 (1992)

    • Related Report
      1993 Annual Research Report
  • [Publications] Tamura,K.: "In Vitro study of E.coli tRNA^<Arg> and tRNA^<Lys> identity elements." Nucleic Acids Research. 20. 2335-2339 (1992)

    • Related Report
      1993 Annual Research Report
  • [Publications] Shimizu,M.: "The role of anticodon bases and the discriminator uncleotide in the recognition of some E.coli ....." Journal of Molecular Evolution. 35. 436-443 (1992)

    • Related Report
      1993 Annual Research Report
  • [Publications] Nameki,N.: "Escherichia coli tRNA^<Asp> recoqnition mechanism differing from that of the yeast system." Biochemical and Biophysical Research Communications. 189. 856-862 (1992)

    • Related Report
      1993 Annual Research Report
  • [Publications] Asahara,H.: "Recognition uncleotides of Escherichia coli tRNA^<Leu> and its elements facilitating discrimination....." Journal of Molecular Biology. 231. 219-229 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Asahara,H.: "Escherichia coli seryl-tRNA synthetase recognizes tRNA^<Ser> by its characteristic tertiary structure." Journal of Molecular Biology. 236,in press. (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Hasegawa, T.: "Identity determinants of E. coli threonine tRNA" Biochemical and Biophysical Research Communications. 184. 478-484 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Tamura, K.: "In vitro study of E. coli tRNA^<Arg> and tRNA^<Lys> identity elements." Nucleic Acids Research. 20. 2335-2339 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Tamura, K.: "In vitro study of E. coli tRNA identity elements." Nucleic Acids Symposium Series. 27. 143-144 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Shimizu, M.: "The role of anticodon bases and the discriminator nucleotide in the recognition of some E. coli tRNAs by their aminoacyl-tRNA synthetases." Journal of Molecular Evolution. 35. 436-443 (1992)

    • Related Report
      1992 Annual Research Report
  • [Publications] Nameki, N.: "Escherichia coli tRNA^<Asp> recognition mechanism differing from that of the yeast system." Biochemical and Biophysical Research Communications. 189. 856-862 (1992)

    • Related Report
      1992 Annual Research Report

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Published: 1992-04-01   Modified: 2016-04-21  

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