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PIONEERING RESEARCH ON THE DYNAMICAL ASPECT OF STRUCTURE-FUNTION RELATIONSHIP IN ION CHANNELS

Research Project

Project/Area Number 05304055
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionNagoya University

Principal Investigator

SOKABE Masahiro  Nagoya University School of Medicine, Physiology, Professor, 医学部, 教授 (10093428)

Co-Investigator(Kenkyū-buntansha) TOYOSHIMA Chikashi  Institute Molecular and Cellular Biosciences, University of Tokyo, Protein analy, 分子細胞生物学研究所, 教授 (70172210)
KUSUMI Akihiro  The University of Tokyo, Life Sciences, Associate Professor, 教養学部, 助教授 (50169992)
OIKI Shigetoshi  National Institute of Physiology, Cellular and Molecular Physiology, Associate P, 機能協関, 助教授 (10185176)
KUBO Yoshihiro  Tokyo Metropolitan Institute for Neuroscience, Neurophysiology, Chief Researcher, 主任研究員 (80211887)
KASAI Michki  Osaka University, Biophysical Engneering, Professor, 基礎工学部, 教授 (40022595)
東田 陽博  金沢大学, 医学部, 教授 (30093066)
桐野 豊  東京大学, 薬学部, 教授 (10012668)
Project Period (FY) 1993 – 1995
Project Status Completed (Fiscal Year 1995)
Budget Amount *help
¥17,600,000 (Direct Cost: ¥17,600,000)
Fiscal Year 1995: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 1994: ¥5,500,000 (Direct Cost: ¥5,500,000)
Fiscal Year 1993: ¥8,400,000 (Direct Cost: ¥8,400,000)
KeywordsIon channels / Higher order structure / Dynamical structure / Model channel / Patch clamp / Molecular biology / Cryo-electron microscopy / 分子動力学 / 動的構造機能連関 / クローニング / チャネル蛋白質 / 電気生理学 / 合成チャネル
Research Abstract

Structuire-function studies of ion channels have greatly progressed in this decade owing to the conbination of molecular bilogical-and pacth clamp-techniques. However it seems still difficult to analyze the dynamical aspects of structure-function relationship in ion channels mainly because we do not know how to measure changes in the higher oder structure of channel molecules. The aim of the present research project was to find out a clue how to detect and estimate the higher order structural changes of channel molecules and to correlate them with channel functions. The team members have been divided into three sub-teams each of which conducted, A) structure-function of biological channels, B) structure-function of model channels, and C) development of new microscopy techniqes. The latter two subjects are particularly characteristic and important in this project. We could scceed to synthetize the world simplest structured channel molecules with ion selectivity or voltage dependecy, which may greatly help us to understand the dynamic structure-function correlation of channel molecules. In addition we have developed several remarkable microscopy techniques ; visualization of single fluorescent molecule, tracing and manipulation of of single channel motion, time-resolved fine structural analysis by the conbination of caged compounds and cryo-electron microscopy. We believe that this achievement would open up a way for the detailled analysis of dynamical aspects of structure-function correlation in ion channels.

Report

(4 results)
  • 1995 Annual Research Report   Final Research Report Summary
  • 1994 Annual Research Report
  • 1993 Annual Research Report
  • Research Products

    (40 results)

All Other

All Publications (40 results)

  • [Publications] Tanaka.Y.,Kobuke,Y.,& Sokabe,M.: "Non-peptide ion channel with a K^+-selective filter." Angew.Chem.(Int Ed Eng). 36(40). 693-694 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Kasai,M,Yamaguchi,N,Kawasaki,T.: "Effects of KCl concentrations on gating properties of calcium release channels in sarcoplasmic reticulum vesicles." J.Biochem.117. 251-256 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] M.Iizuka,Y.Kubo,I.Tsunenari,C.X.Pan,I.Akiba & T.Kono: "Functional characterization and localization of a cardiac-type inwardly rectifying K^+ channel." Receptors and Channels. 3. 299-315 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Oiki,S.,Koeppe II,R.E.and Andersen,O.S.: "Voltage-dependent gating of an asymmetric gramicidin channel." Proc.Natl.Acad.Sci.USA. 92. 2121-2125 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Y.Sako and A.Kusumi.: "Barriers for lateral diffusion of transferrin receptor in the plasma membrane as characterize by receptor dragging by laser tweezers : fence versus tether." J.Cell Biol.129. 1559-1574 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Mimori,Y.,Yamashita,I.,Murata,K.,Fujiyoshi,Y.,Yonekura,K.,Toyoshima,C.and Namba,K.: "The Structure of the R-type Straig ht Flagellar Filament of Salmonella at 9 Å Resolution by Electr on Cryomicroscopy." J.Mol.Biol.249. 69-87 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Kasai,M,Yamaguchi,N,Kawasaki,T: "Regulation of calcium channel in sarcoplasmic reticulum vesicles by calsequestrin. Calcium as Cell Signal." Igakushoin, 89-94 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] 横山 茂,東田陽博: "シナプスにおけるイオンチャネル.吉岡 亨(編) 生体情報シリーズ4 シナプス伝達のダイナミックス" 培風館, 33-43 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Tanaka, Y., Kobuke, Y., Sokabe, M.: "Non-peptide ion channel with a K+-selective filter." Angew.Chem (Int Ed Eng). 36. 693-694 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Kasai, M., Yamaguchi, N., Kawasaki, T.: "Effects of KCl concentrations on gating properties of calcium release channels in sarcoplasmic reticulum vesicles" J.Biochem.117. 251-256 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Iizuka, M., Kubo, Y., Tsunenari, I., C.X.Pan, Akiba, I., Kono, T.: "Functional characterization and localization of a cardiac-tyoe inwardly rectifying K+ channel." Receptors and Channels. 3. 299-315 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Oiki, S., Koeppe, IIR,E., Andersen, O.S.: "Volatage-dependent gating of an asymmetric gramicidin channel" Proc.Natil Acad.Sci.USA. 92. 2121-2125 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Sako, Y., Kusumi, A.: "Barriers for lateral diffusion of transferrin receptor in the plasma membrane as characterized by receptor dragging by laser tweezers : fence versus tether" J.Cell Biol.129. 1559-1574 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Mimori, y., Yamashita, I., Murata, K., Fujiyoshi, Y., Yonekura, K., Toyoshima, C., Nanba, K.: "The structure of the R-type straught flagella filament of Salmonella at 9 A resolution by electron cryomicroscopy" J.Mol.Biol.249. 69-87 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Kasai, M., Yamaguchi, N., Kawasaki, T.: Regulation of calcium channel in sarcoplasmc reticulum vesicles by carsequestrin. In "Calcium as Cell Siganl". Igaku-shoin, 89-94

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Yokoyama, S., Higashida, H.: Ion channels in synapes. In "Dynamics of Synaptic Transmission". Balfukan, 33-43

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Tanaka,Y.,Kobuke,Y.,& Sokabe,M.: "Non-peptide ion channel with a K^+-selective filter." Angew.Chem. (Int Ed Eng). 36(40). 693-694 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Kasai,M,Yamaguchi,N,Kawasaki,T.: "Effects of KC1 concentrations on gating properties of calcuim release channels in sarcoplasmic reticulum vesicles." J.Biochem.117. 251-256 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] M.Iizuka,Y.Kubo.I.Tsunenari,C.X.Pan,I.Akiba & T.Kono: "Functional characterization and localization of a cardiac-type inwardly rectifying K^+ channel." Receptors and Channels. 3. 299-315 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Oiki,S.,Koeppe II,R.E.and Andersen,O.S.: "Voltage-dependent gating of an asymmetric gramicidin channel." Proc.Natl.Acad.Sci.USA,. 92. 2121-2125 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Y.Sako and A.Kusumi.: "Barriers for lateral diffusion of transferrin receptor in the plasma membrane as characterize by receptor dragging by laser tweezers : fence versus tether." J.Cell Biol.129. 1559-1574 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Minori,Y.,Yamashita,I.,Murata,K.,Fujiyoshi,Y.,Yonekura,K.,Toyoshima,C.and Namba,K.: "The Structure of the R-type Straig ht Flagellar Filament of Salmonella at Å Resoluton by Electr on Cryomicroscopy." J.Mol.Biol. 249. 69-87 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Kasai,M,Yamaguchi,N,Kawasaki,T: "Regulation of calcium channel in sarcoplasmic reticulum vesicles by calsequestrin. Calcuim as Cell Signal." Igakushoin, 88-94 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] 横山 茂,東田陽博: "シナプスにおけるイオンチャネル.吉田 亨(編) 生体情報シリーズ4 シナプス伝達のダイナミックス." 培風館, 33-43 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Takashi Kawasaki,and Michiki Kasai: "REGULATION OF CALCIUM CHANNEL IN SARCOPLASMIC RETICULUM BY CALSEQUESTRIN." Biochemical and Biophysical Research Communications. 199(3). 1120-1127 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Y.Sako,and A.Kusumi,et al.,: "Compartmentalized structure of the plasma memnrane for receptor movements as revealed by a nanometer‐level motion analysis." J.Cell Biol.125. 1251-1264 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] T.Iwata,et.al.,: "″Design and Synthesis of Amphipathic 3^<10>llelical Peptides and Their interactions with Phospholipid Bilayers and Ion Channel Formation″," J.Biol.Chem.269(7). 4928-4933 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] J.A.Black,et al.,: "Sodium Channel mRNAs I,II and III in the CNA:Cell‐specific Expression." Molecular Brain Research. 22. 275-289 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] TaNAKA,Y.,et. al.: "Non‐Peptide ion channel with a K^+‐selective filter." Angew.Chem.(In press).

    • Related Report
      1994 Annual Research Report
  • [Publications] Y.Kubo,et.al.,: "Towards the elucidation of the struclural‐functional relationship of inward rectifying K^+ channel family." Neuroscience Pesearch. (In press).

    • Related Report
      1994 Annual Research Report
  • [Publications] 曽我部 正博: "イオンチャネルによる情報交換「ナノバイオロジー入門:時間と空間の生物学」)(嶋本編)" 講談社, 222 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 葛西 道生: "光散乱法 In 膜学実験シリーズ1" 共立出版, 424 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Naruse,K: "Involvement of stretch activated ion channels in Ca^<2+> mobilization to mechanical stretch in endothelial cells." J.Physiol.33C. 1037-1044 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Toyoshima,C.: "Three-dimensional cryo-electron microscopy of the calcium pump in the sarcoplasmic reticulum membrane." Nature. 362. 469-471 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Werkman,T.R.: "Charybdotoxin,dendrotoxin and mast cell degranulating peptide block the voltage-activated K^+ current of fibroblast cells stably transfected with NGK1(Kv1.2)K^+ channel complementary DNA" Neurosci. 50. 935-946 (1992)

    • Related Report
      1993 Annual Research Report
  • [Publications] Oiki,S: "Asymmetric gramicidin channels:Heterodimeric channels with a single F_6Val^1 residue,B iophys.J." Biophys.J.(in press).

    • Related Report
      1993 Annual Research Report
  • [Publications] Kasai,M: "Effects of ryanodine on permeability of choline and glucose through calcium channel in sarcoplasmic reticulum vesicles." J.Biochem.113. 327-333 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] Lee,S: "Effect of Salts on Conformational Change of Basic Amphipathic Peptides from β-Structure to α-Helix in the Presence of Phospholipid Liposomes and Their Channel-forming Activity" Biochim.Biophys.Acta.1151. 76-82 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] 曽我部 正博: "機械刺激を感知するイオンチャネル(In“イオンチャネルと疾患")(倉智編)" 羊工社, 174 (1993)

    • Related Report
      1993 Annual Research Report
  • [Publications] 曽我部 正博: "イオンチャネルの機能的再構成(In“膜学実験シリーズ1")日本膜学会編" 共立出版, 424 (1993)

    • Related Report
      1993 Annual Research Report

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Published: 1993-04-01   Modified: 2016-04-21  

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