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Developement of a Cell-free protein synthesizing system

Research Project

Project/Area Number 05558087
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionEhime University

Principal Investigator

ENDO Yaeta  Ehime Univ., Fac.of Engineering, Professor, 工学部, 教授 (40093843)

Co-Investigator(Kenkyū-buntansha) NAKANO Kouichi  Toso Co.Ltd., Institute of Biotechnology, Chief Researcher, 生物工学研究所, 室長
YOKOYAMA Shigeyuki  The Univ.of Tokyo Fac.of Sciences, Professor, 大学院・理学系研究科, 教授 (00159229)
Project Period (FY) 1993 – 1995
Project Status Completed (Fiscal Year 1995)
Budget Amount *help
¥16,500,000 (Direct Cost: ¥16,500,000)
Fiscal Year 1995: ¥2,000,000 (Direct Cost: ¥2,000,000)
Fiscal Year 1994: ¥4,000,000 (Direct Cost: ¥4,000,000)
Fiscal Year 1993: ¥10,500,000 (Direct Cost: ¥10,500,000)
KeywordsCell-free protein synthesizing system / Ribosome inactivating protein / Improvement of translation efficiency / E.coli coupled transcription and translation system / Double labeling of protein with stable isotopes / NMR Analysis of Raf / Ras interacting site / コムギ胚芽無細胞系の翻訳反応効率化 / 安定同位体元素2重標識Ras蛋白質 / 無細胞蛋白質合成 / リボソーム / ロボソームRNA / RNA N-グリコシダーゼ / 翻訳活性の効率化 / 連続式無細胞蛋白質合成 / 小麦胚芽無細胞蛋白質合成系 / 大腸菌無細胞蛋白質合成系 / 連続反応装置 / 転写・翻訳共役反応
Research Abstract

The aim of the project was to develope an effecient cell-free protein synthesis system. Our research addressed two aspects of the project : (1) production of the reaction chamber and (2) an optimization of reaction mixture in terms of translational activity. We chose two cell-free systems and have the followings results.
(1) production of a reaction chamber : We designed several chamber that included a mixing device to support a continuous-flow cell-free system. When testing their efficiencies using the wheat germ system we observed a rapid decline of protein synthesis after 10 hours. The reason for the decline was entirely due to the denaturation of ribosomes during the reaction ; the reaction vessels did not contribute to the loss of protein synthesis. Thus we focused on possible mechanisms responsible for the denaturation of ribosomes.
(2) Wheat germ cell-free system : Although it has long been believed that tritin, a ribosome-inactivating protein in wheat germ, dose not act on its own ribosomes, we found that this protein does indeed inactivate translating ribosomes and thus is a strong endogenus inhibitor of the protein synthesis. We were able to identify two substances that effectively neutralize the action of tritin and succeeded in increasing translation activity.
(3) E.coli cell-free system : We found that a concentrated E.coli S-30 fraction supplimented with high amounts of amino acids and energy sources produces largy quantities of translation product as much as 0.4 mg/ml of the system. With this system. we synthesized Ras protein site-specifically double labeled with stable isotope of a quality and quantity sufficient for NMR analysis. The cell-free system thus was shown to be a powerfull tool in the preparation of material for NMR analysis.

Report

(4 results)
  • 1995 Annual Research Report   Final Research Report Summary
  • 1994 Annual Research Report
  • 1993 Annual Research Report
  • Research Products

    (46 results)

All Other

All Publications (46 results)

  • [Publications] Sekine,S.: "Major Identity Determinants in the Augmented D Helix of tRNA^<Glu> from Escherichia coli" J.Mol.Biol.256. 685-700 (1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Orita,M.,et all.: "High-resolution NMR Study of a GAGA tetranuclcotide loop that is an improved substrate for ricin, a cytotoxic plant protein" Nucleic Acids Res.(1996)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Nureki,O.: "Architeetures of class-defining and speeific domains of glutamyl-tRNA synthetase" Science. 267. 1958-1965 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Kigawa,T.: "Cell-Free Synthesis and Amino Acid-Selective Stable-Isotopic Labeling of Protein for NMR Analysis" J.Biomol.NMR. 6. 129-143 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Tateno,M.: "A three-dimensional structure model of the complex of glutamyl-tRNA synthetase and its cognate tRNA" FEBS Lett.377. 77-81 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Seio,K.: "Synthesis and Properties of Conformationnally Rigid Cyclouridylic Acid Having a Covalent Bonding Linker between the Uracil 5-position and the 5-Phosphate Group" Tetrahedron Letters. 36. 9515-9518 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Liu,J.: "The zinc-binding site of Escherichia coli glutamyl-tRNA synthetase is located in the acceptor-binding domain" J.Biol.Chem.270. 15162-15169 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Endo,Y.,et al: "Structure and Function of Ribosomal RNA" Viva Origino. 23. 223-236 (1995)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Tamura,M.,et al.: "Synthesis of a photo-reactive _cDNA probe with a sequence to recognize the GTPase domain of 28SrRNA" Nucleic Acids Sympo.Ser.31. 69-70 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Ogata,K.,et al.: "Properties and function of rat liver cytosolic 5S rRNA" Nucleic Acids Sympo.Ser.31. 271-272 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Yoshinari,S.,et al.: "RAPnase,a novel enzyme found in wheat germ that cleaves phophodiester bond at a specific apurinic rRNA site in ribosomes" Nucleic Acids Sympo.Ser.31. 209-210 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Gluck,A.: "The ribosomal RNA identity elements for ricin and for α-sarcin:mutations in the putative CG pair that closes a GAGA tetraloop" Nucleic Asids Rer.22. 321-324 (1994)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Sekine, S., et al: "Major Identity Determinants in the Augmented D Helix of tRNA ^<Glu> from Escherichia coli" J.Mol.Biol. 256. 685-700 (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Orita, M., Nishikawa, F., Kohno, T., Senda, T., Mitsui, U., Endo, Y., Taira, K.and Nishikawa, S.: "High-resolution NMR Study of a GAGA tetranucleotide loop that is an improved substrate for ricin, a cytotoxic plant protein" Nucleic Acids Res. (in press). (1996)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Nureki, O., Vassylyev, D.G., Katayanagi, K., Shimizu, T., Sekine, S., Kigawa, T., Miyazawa, T., Yokoyama, S., and Morikawa, K.: "Architectures of class-defining and specific domains of glutamyl-tRNA synthetase" Science. 267. 1958-1965 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Kigawa, T., Muto, Y., Yokoyama, S.: "Cell-free Synthesis and Amino Acid-Selective Stable-Isotopic Labeling of Protein for NMR Analysis" J.Biomol.NMR. 6. 129-143 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Tateno, M., Nureki, O., Sekine, S., Kaneda, K., Go, M., Yokoyama, S.: "A three-dimensional structure model of the complex of gultamyl-tRNA synthetase and its cognate tRNA" FEBS Lett. 377. 77-81 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Seio, K., Wada, T., Sakamoto, K., Yokoyama, S.and Sekine, M.: "Synthesis and Properties of Conformationally Rigid Cyclouridylic Acid Having a Covalent Bonding Linker between the Uracil 5-position and 5'-Phosphate Group" Tetrahedron Letters. 36. 9515-9518 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Liu, J., Gagnn, Y., Gauthier, J.Furenlid, L., L'Heureux, P-J., Auger, M., Nureki, O., Yokoyama, S.: "The zinc-binding site of Escherichia coli glutamyl-tRNA synthetase is located in the acceptor-binding domain" J.Biol.Chem.270. 15162-15169 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Endo, Y.and Yoshinari, S.: "Structure and Function of Ribosomal RNA" Viva Origino. 23. 223-236 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Tamura, M., Shinntani, T., Hirao, I., Yoshinari, S.and Endo, Y.: "Synthesis of a photo-reactive cDNA probe with a sequence to recognize the GTPase domain of 28S rRNA" Nucleic Acids Sympo.Ser.31. 69-70 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Ogata, K., Kurahashi, A., Ohno, R., Takahashi, K., Endo, Y.and Terao, K.: "Properties and function of rat liver cytosolic 5S rRNA" Nucleic Acids Sympo.Ser.31. 271-272 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Yoshinari, S., Yoshida, S.and Endo, Y.: "RAPnase, a novel enzyme found in wheat germ that cleaves phophodiester bond at a specific apurinic rRNA site in ribosomes" Nucleic Acids Sympo.Ser.31. 209-210 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Gluck, A., Endo, Y., and Wool, Ira G.: "The ribosomal RNA identity elements for ricin and for a-sarcin : mutations in the putative CG pair that closes a GAGA tetraloop" Nucleic Acids Res.22. 321-324 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      1995 Final Research Report Summary
  • [Publications] Sekine,S.: "Major Identity Determinants in the Augmented D Helix of tRNA^<Glu> from Escherichia coli" J.Mol.Biol.256. 685-700 (1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Orita,M.,et all.: "High-resolution NMR Study of a GAGA tetranucleotide loop that is an improved substrate for ricin,a cytotoxic plant protein" Nucleic Acids Res.(1996)

    • Related Report
      1995 Annual Research Report
  • [Publications] Nureki,O.: "Architectures of class-defining and specific domains of glutamyl-tRNA synthetase" Science. 267. 1958-1965 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Kigawa,T.: "Cell-Free Synthesis and Amino Acid-Selective Stable-Isotopic Labeling of Protein for NMR Analysis" J.Biomol.NMR. 6. 129-143 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Tateno,M.: "A three-dimensional structure model of the complex of glutamyl-tRNA synthetase and its cognate tRNA" FEBS Lett.377. 77-81 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Seio,K.: "Synthesis and Properties of Conformationnally Rigid Cyclouridylic Acid Having a Covalent Bonding Linker between the Uracil 5-position and the 5'-Phosphate Group" Tetrahedron Letters. 36. 9515-9518 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Liu,J.: "The zinc-binding site of Escherichia coli glutamyl-tRNA synthetase is located in the acceptor-binding domain" J.Biol.Chem.270. 15162-15169 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Endo,Y.,et al.: "Structure and Function of Ribosomal RNA" Viva Origino. 23. 223-236 (1995)

    • Related Report
      1995 Annual Research Report
  • [Publications] Tamura,M.,et al.: "Synthesis of a photo-reactive cDNA probe with a sequence to recognize the GTPase domain of 28S rRNA" Nucleic Acids Sympo.Ser.31. 69-70 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Ogata,K.,et al.: "Properties and function of rat liver cytosolic 5S rRNA" Nucleic Acids Sympo.Ser.31. 271-272 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Yoshinari,S.,et al.: "RAPnase,a novel enzyme found in wheat germ that cleaves phophodiester bond at a specific apurinic rRNA site in ribosomes" Nucleic Acids Sympo.Ser.31. 209-210 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Gluck,A.: "The ribosomal RNA identity elements for ricin and for α-sarcin : mutations in the putative CG pair that closes a GAGA tetraloop" Nucleic Acids Rer.22. 321-324 (1994)

    • Related Report
      1995 Annual Research Report
  • [Publications] Anton Gluck: "The ribosomal RNA identity elements for ricin and for alpha-sarcin" Nucleic Acids Res.22. 321-324 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Kikuo Ogata: "Properties and function of rat liver cytosolic 5S rRNA" Nucleic Acids Sympo.Ser.31. 271-272 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Shigeo Yoshinari: "PAPnase,a novel enzyme found inwheat germ that cleaves phosphodiester bond" Nucleic Acids Sympo.Ser.31. 209-210 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Minoru Tamura: "Synthesis of a photo-reactive cDNA probe with a sequence to recoqnize the GTPase domain of 28S rRNA" Nucleic Acids Sympo.Ser.31. 69-70 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Osamu Nureki: "Molecular recognition of the identity-determinant set of isoleucine transfer RNA from E.coli" J.Mol.Biol.236. 710-724 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Hideo Hosaka: "Sequence-specific cleavage of oligoriboncleotide capable of forming a stem and loop structure" J.Biol.Chem.269. 20090-20094 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 折田正弥: "PHARM TECH JAPAN" 機能性核酸のNMRによる構造解析, 14 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] 遠藤弥重太: "遺伝" リボソームRNAの構造と機能, 5 (1994)

    • Related Report
      1994 Annual Research Report
  • [Publications] Orita Masaya: "High-resolution NMR study of a synthetic oligoribonucleotide with a tetranucleotide GAGA loop" Nucleic Acids Research. 21. 5670-5678 (1994)

    • Related Report
      1993 Annual Research Report
  • [Publications] Gluck Anton: "Ribosomal RNA identity element for recognition by ricin and by α-sarcin" Nucleic Acids Research. 22. 321-324 (1994)

    • Related Report
      1993 Annual Research Report

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Published: 1993-04-01   Modified: 2016-04-21  

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